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Rat connectome



Paragigantocellular reticular nucleus medial part left


Abbreviation
PGiM
Color       
Superior regionsParagigantocellular reticular nucleus

SynonymsAbbr.Language
Paragigantocellular reticular nucleus medial partPGiMEng
Medial part of the nucleus reticularis paragigantocellularis Eng

Output to

NameSideAbbr.WeightDetails
Substantia nigra A9ipsiSN-0.5
Locus coeruleus medial partipsiLCcBM-0.5
Magnocellular reticular nucleus beta partipsiNRMCb-0.5
Parafascicular thalamic nucleus prerubral partipsiPFPR-0.5
Posterior parafascicular centre-median complexipsiPPFCM2.5
Medial globus pallidusipsiMGP-0.5
Area X C5ipsiSCL10C51
Area X L5ipsiSCL10L51
Orbicularis oculi muscleipsiMuscOrbOc1

Input from

NameSideAbbr.WeightDetails
Supraoculomotor central grayipsiSOCG3
Periaqueductal grayipsiPAG3
Lateral periaqueductal grayipsiLPAG3
Periaqueductal gray caudal partipsiPAGc3
Ventrolateral periaqueductal grayipsiVLPAG3
Dorsal raphe nucleusipsiDR1
Dorsal to the lateral wings of the dorsal rapheipsiDLWDR3
Supraoculomotor periaqueductal grayipsiSu3-0.5
AqueductipsiAq1
Area X C1ipsiSCL10C1-0.5
Spinal cord layer 5 C1ipsiSCL5C1-0.5
Spinal cord layer 4 C1ipsiSCL4C1-0.5
Spinal cord layer 7 C1ipsiSCL7C1-0.5
Spinal cord layer 8 C1ipsiSCL8C1-0.5
Area X C2ipsiSCL10C2-0.5
Spinal cord layer 5 C2ipsiSCL5C2-0.5
Spinal cord layer 4 C2ipsiSCL4C2-0.5
Spinal cord layer 7 C2ipsiSCL7C2-0.5
Spinal cord layer 8 C2ipsiSCL8C2-0.5
Area X C3ipsiSCL10C3-0.5
Spinal cord layer 5 C3ipsiSCL5C3-0.5
Spinal cord layer 4 C3ipsiSCL4C3-0.5
Spinal cord layer 7 C3ipsiSCL7C3-0.5
Spinal cord layer 8 C3ipsiSCL8C3-0.5
Area X C4ipsiSCL10C4-0.5
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Spinal cord layer 4 C4ipsiSCL4C4-0.5
Spinal cord layer 7 C4ipsiSCL7C4-0.5
Spinal cord layer 8 C4ipsiSCL8C4-0.5
Area X C5ipsiSCL10C5-0.5
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Spinal cord layer 4 C5ipsiSCL4C5-0.5
Spinal cord layer 7 C5ipsiSCL7C5-0.5
Spinal cord layer 8 C5ipsiSCL8C5-0.5
Area X C6ipsiSCL10C6-0.5
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 4 C6ipsiSCL4C6-0.5
Spinal cord layer 7 C6ipsiSCL7C6-0.5
Spinal cord layer 8 C6ipsiSCL8C6-0.5
Area X C7ipsiSCL10C7-0.5
Spinal cord layer 5 C7ipsiSCL5C7-0.5
Spinal cord layer 4 C7ipsiSCL4C7-0.5
Spinal cord layer 7 C7ipsiSCL7C7-0.5
Spinal cord layer 8 C7ipsiSCL8C7-0.5
Area X C8ipsiSCL10C8-0.5
Spinal cord layer 5 C8ipsiSCL5C8-0.5
Spinal cord layer 4 C8ipsiSCL4C8-0.5
Spinal cord layer 7 C8ipsiSCL7C8-0.5
Spinal cord layer 8 C8ipsiSCL8C8-0.5
Periaqueductal graycontraPAG-0.5
Supraoculomotor periaqueductal graycontraSu3-0.5
Area X C1contraSCL10C1-0.5
Spinal cord layer 5 C1contraSCL5C1-0.5
Spinal cord layer 4 C1contraSCL4C1-0.5
Spinal cord layer 7 C1contraSCL7C1-0.5
Spinal cord layer 8 C1contraSCL8C1-0.5
Area X C2contraSCL10C2-0.5
Spinal cord layer 5 C2contraSCL5C2-0.5
Spinal cord layer 4 C2contraSCL4C2-0.5
Spinal cord layer 7 C2contraSCL7C2-0.5
Spinal cord layer 8 C2contraSCL8C2-0.5
Area X C3contraSCL10C3-0.5
Spinal cord layer 5 C3contraSCL5C3-0.5
Spinal cord layer 4 C3contraSCL4C3-0.5
Spinal cord layer 7 C3contraSCL7C3-0.5
Spinal cord layer 8 C3contraSCL8C3-0.5
Area X C4contraSCL10C4-0.5
Spinal cord layer 5 C4contraSCL5C4-0.5
Spinal cord layer 4 C4contraSCL4C4-0.5
Spinal cord layer 7 C4contraSCL7C4-0.5
Spinal cord layer 8 C4contraSCL8C4-0.5
Area X C5contraSCL10C5-0.5
Spinal cord layer 5 C5contraSCL5C5-0.5
Spinal cord layer 4 C5contraSCL4C5-0.5
Spinal cord layer 7 C5contraSCL7C5-0.5
Spinal cord layer 8 C5contraSCL8C5-0.5
Area X C6contraSCL10C6-0.5
Spinal cord layer 5 C6contraSCL5C6-0.5
Spinal cord layer 4 C6contraSCL4C6-0.5
Spinal cord layer 7 C6contraSCL7C6-0.5
Spinal cord layer 8 C6contraSCL8C6-0.5
Area X C7contraSCL10C7-0.5
Spinal cord layer 5 C7contraSCL5C7-0.5
Spinal cord layer 4 C7contraSCL4C7-0.5
Spinal cord layer 7 C7contraSCL7C7-0.5
Spinal cord layer 8 C7contraSCL8C7-0.5
Area X C8contraSCL10C8-0.5
Spinal cord layer 5 C8contraSCL5C8-0.5
Spinal cord layer 4 C8contraSCL4C8-0.5
Spinal cord layer 7 C8contraSCL7C8-0.5
Spinal cord layer 8 C8contraSCL8C8-0.5
Area X T1contraSCL10T1-0.5
Spinal cord layer 5 T1contraSCL5T1-0.5
Spinal cord layer 4 T1contraSCL4T1-0.5
Spinal cord layer 7 T1contraSCL7T1-0.5
Spinal cord layer 8 T1contraSCL8T1-0.5
Area X T2contraSCL10T2-0.5
Spinal cord layer 5 T2contraSCL5T2-0.5
Spinal cord layer 4 T2contraSCL4T2-0.5
Spinal cord layer 7 T2contraSCL7T2-0.5
Spinal cord layer 8 T2contraSCL8T2-0.5
Area X T3contraSCL10T3-0.5
Spinal cord layer 5 T3contraSCL5T3-0.5
Spinal cord layer 4 T3contraSCL4T3-0.5
Spinal cord layer 7 T3contraSCL7T3-0.5
Spinal cord layer 8 T3contraSCL8T3-0.5
Area X T4contraSCL10T4-0.5
Spinal cord layer 5 T4contraSCL5T4-0.5
Spinal cord layer 4 T4contraSCL4T4-0.5
Spinal cord layer 7 T4contraSCL7T4-0.5
Spinal cord layer 8 T4contraSCL8T4-0.5
Area X T5contraSCL10T5-0.5
Spinal cord layer 5 T5contraSCL5T5-0.5
Spinal cord layer 4 T5contraSCL4T5-0.5
Spinal cord layer 7 T5contraSCL7T5-0.5
Spinal cord layer 8 T5contraSCL8T5-0.5
Area X T6contraSCL10T6-0.5
Spinal cord layer 5 T6contraSCL5T6-0.5
Spinal cord layer 4 T6contraSCL4T6-0.5
Spinal cord layer 7 T6contraSCL7T6-0.5
Spinal cord layer 8 T6contraSCL8T6-0.5
Area X T7contraSCL10T7-0.5
Spinal cord layer 5 T7contraSCL5T7-0.5
Spinal cord layer 4 T7contraSCL4T7-0.5
Spinal cord layer 7 T7contraSCL7T7-0.5
Spinal cord layer 8 T7contraSCL8T7-0.5
Area X T8contraSCL10T8-0.5
Spinal cord layer 5 T8contraSCL5T8-0.5
Spinal cord layer 4 T8contraSCL4T8-0.5
Spinal cord layer 7 T8contraSCL7T8-0.5
Spinal cord layer 8 T8contraSCL8T8-0.5
Area X T9contraSCL10T9-0.5
Spinal cord layer 5 T9contraSCL5T9-0.5
Spinal cord layer 4 T9contraSCL4T9-0.5
Spinal cord layer 7 T9contraSCL7T9-0.5
Spinal cord layer 8 T9contraSCL8T9-0.5
Area X T10contraSCL10T10-0.5
Spinal cord layer 5 T10contraSCL5T10-0.5
Spinal cord layer 4 T10contraSCL4T10-0.5
Spinal cord layer 7 T10contraSCL7T10-0.5
Spinal cord layer 8 T10contraSCL8T10-0.5
Area X T11contraSCL10T11-0.5
Spinal cord layer 5 T11contraSCL5T11-0.5
Spinal cord layer 4 T11contraSCL4T11-0.5
Spinal cord layer 7 T11contraSCL7T11-0.5
Spinal cord layer 8 T11contraSCL8T11-0.5
Area X T12contraSCL10T12-0.5
Spinal cord layer 5 T12contraSCL5T12-0.5
Spinal cord layer 4 T12contraSCL4T12-0.5
Spinal cord layer 7 T12contraSCL7T12-0.5
Spinal cord layer 8 T12contraSCL8T12-0.5
Area X T13contraSCL10T13-0.5
Spinal cord layer 5 T13contraSCL5T13-0.5
Spinal cord layer 4 T13contraSCL4T13-0.5
Spinal cord layer 7 T13contraSCL7T13-0.5
Spinal cord layer 8 T13contraSCL8T13-0.5
Area X L1contraSCL10L1-0.5
Spinal cord layer 5 L1contraSCL5L1-0.5
Spinal cord layer 4 L1contraSCL4L1-0.5
Spinal cord layer 7 L1contraSCL7L1-0.5
Spinal cord layer 8 L1contraSCL8L1-0.5
Area X L2contraSCL10L2-0.5
Spinal cord layer 5 L2contraSCL5L2-0.5
Spinal cord layer 4 L2contraSCL4L2-0.5
Spinal cord layer 7 L2contraSCL7L2-0.5
Spinal cord layer 8 L2contraSCL8L2-0.5
Area X L3contraSCL10L3-0.5
Spinal cord layer 5 L3contraSCL5L3-0.5
Spinal cord layer 4 L3contraSCL4L3-0.5
Spinal cord layer 7 L3contraSCL7L3-0.5
Spinal cord layer 8 L3contraSCL8L3-0.5
Area X L4contraSCL10L4-0.5
Spinal cord layer 5 L4contraSCL5L4-0.5
Spinal cord layer 4 L4contraSCL4L4-0.5
Spinal cord layer 7 L4contraSCL7L4-0.5
Spinal cord layer 8 L4contraSCL8L4-0.5
Area X L5contraSCL10L5-0.5
Spinal cord layer 5 L5contraSCL5L5-0.5
Spinal cord layer 4 L5contraSCL4L5-0.5
Spinal cord layer 7 L5contraSCL7L5-0.5
Spinal cord layer 8 L5contraSCL8L5-0.5
Area X L6contraSCL10L6-0.5
Spinal cord layer 5 L6contraSCL5L6-0.5
Spinal cord layer 4 L6contraSCL4L6-0.5
Spinal cord layer 7 L6contraSCL7L6-0.5
Spinal cord layer 8 L6contraSCL8L6-0.5
Area X S1contraSCL10S1-0.5
Spinal cord layer 5 S1contraSCL5S1-0.5
Spinal cord layer 4 S1contraSCL4S1-0.5
Spinal cord layer 7 S1contraSCL7S1-0.5
Spinal cord layer 8 S1contraSCL8S1-0.5
Area X S2contraSCL10S2-0.5
Spinal cord layer 5 S2contraSCL5S2-0.5
Spinal cord layer 4 S2contraSCL4S2-0.5
Spinal cord layer 7 S2contraSCL7S2-0.5
Spinal cord layer 8 S2contraSCL8S2-0.5
Area X S3contraSCL10S3-0.5
Spinal cord layer 5 S3contraSCL5S3-0.5
Spinal cord layer 4 S3contraSCL4S3-0.5
Spinal cord layer 7 S3contraSCL7S3-0.5
Spinal cord layer 8 S3contraSCL8S3-0.5
Area X S4contraSCL10S4-0.5
Spinal cord layer 5 S4contraSCL5S4-0.5
Spinal cord layer 4 S4contraSCL4S4-0.5
Spinal cord layer 7 S4contraSCL7S4-0.5
Spinal cord layer 8 S4contraSCL8S4-0.5
Area X Co1contraSCL10Co1-0.5
Spinal cord layer 5 Co1contraSCL5Co1-0.5
Spinal cord layer 4 Co1contraSCL4Co1-0.5
Spinal cord layer 7 Co1contraSCL7Co1-0.5
Spinal cord layer 8 Co1contraSCL8Co1-0.5
Area X Co2contraSCL10Co2-0.5
Spinal cord layer 5 Co2contraSCL5Co2-0.5
Spinal cord layer 4 Co2contraSCL4Co2-0.5
Spinal cord layer 7 Co2contraSCL7Co2-0.5
Spinal cord layer 8 Co2contraSCL8Co2-0.5
Area X Co3contraSCL10Co3-0.5
Spinal cord layer 5 Co3contraSCL5Co3-0.5
Spinal cord layer 4 Co3contraSCL4Co3-0.5
Spinal cord layer 7 Co3contraSCL7Co3-0.5
Spinal cord layer 8 Co3contraSCL8Co3-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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