University of Rostock

Department of Anatomy

Neuroscience Group

  Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Spinal cord layer 5 C7 left


Abbreviation
SCL5C7
Color       
Superior regionsDeep dorsal horn C7

SynonymsAbbr.Language
Spinal cord layer 5 C7SCL5C7Eng

SubregionsSide
Spinal cord layer 5 lateral part C7left
Spinal cord layer 5 medial part C7left
Spinal cord layer 5 dorsal half C7left
Spinal cord layer 5 ventral part C7left

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG-0.5
Dorsal periaqueductal grayipsiDPAG0.5
Dorsolateral periaqueductal grayipsiDLPAG1
Lateral periaqueductal grayipsiLPAG1.5
Periaqueductal gray dorsal partipsiPAGd0.5
Periaqueductal gray laterodorsal partipsiPAGLD0.5
Periaqueductal gray lateroventral partipsiPAGLV0.5
Ventrolateral periaqueductal grayipsiVLPAG1.5
Inferior colliculusipsiICOL-0.5
Paraflocculus ventral partipsiPFlv-0.5
Posterior lobe of the cerebellumipsiCERCPL1
Ansiform lobule crus 1ipsiCrus13
Paramedian lobuleipsiPM-0.5
Simple lobuleipsiSim3
Anterior lobeipsiAnL2
Cerebellar lobule 3ipsiCERL33
Cerebellar lobule 4ipsiCERL43
Cerebellar lobule 5ipsiCERL53
Paravermal region of anterior lobeipsiPVAnL3
Cerebellar lobule 7ipsiCERL73
Cerebellar lobule 7aipsiCERL7a1
Cerebellar lobule 7bipsiCERL7b1
Cerebellar lobule 8ipsiCERL81
Cerebellar lobule 9ipsiCERL91
Cerebellar lobule 6ipsiCERL63
Cerebellar lobule 6aipsiCERL6a1
Cerebellar lobule 6bipsiCERL6b1
Cerebellar lobule 6cipsiCERL6c1
Cerebellar lobule 6dipsiCERL6d1
Posterior lobe vermisipsiPLVERM3
FlocculusipsiFl-0.5
Reticular systemipsiRF-0.5
Dorsal reticular formationipsiDRF-0.5
Magnocellular reticular nucleusipsiNRMC-0.5
Medial pontomedullary reticular formationipsiMPomRF-0.5
Pontine reticular nucleus oral partipsiPnO1
Cuneiforme nucleusipsiCnF1.5
Parabrachial nucleusipsiPB3
Koelliker Fuse nucleusipsiKF0.5
Lateral parabrachial nucleusipsiLPB-0.5
Lateral parabrachial nucleus crescent partipsiLPBCr0.5
Lateral parabrachial nucleus dorsolateral partipsiLPBdL0.5
Lateral parabrachial nucleus external part inner portionipsiLPBEip0
Lateral parabrachial nucleus external part outer portionipsiLPBEop0
Lateral parabrachial nucleus internal partipsiLPBI1
Lateral parabrachial nucleus lateral partipsiLPBL1
Lateral parabrachial nucleus superior partipsiLPBS0.5
Parabrachial nucleus central lateral partipsiPBCeL1
Parabrachial nucleus dorsolateral partipsiPBDL1
Parabrachial nucleus medialipsiPBnMe0
Medial parabrachial nucleus external partipsiMPBE0
Dorsal part of the middle one third of the parabrachial nucleusipsiPBDmiotD3
Parabrachial nucleus superior lateralipsiPBSL1
Gigantocellular reticular nucleusipsiGi1
Lateral reticular nucleusipsiLRt4
Caudal part to the midportion of the lateral reticular nucleusipsiCaLRtMp2
Caudal third of the caudomedial part of the lateral reticular nucleusipsiLRtcmCt2
Lateral reticular nucleus lateral partipsiLRtL1
Lateral reticular nucleus magnocellular partipsiLRtMC1
Lateral reticular nucleus parvicellular partipsiLRtPC1
Subnucleus reticularis dorsalisipsiSRD3
Subnucleus reticularis ventralis medullae oblongataeipsiSRV-0.5
Medullary reticular nucleus dorsal partipsiMdDd3
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd3
Ambiguus nucleusipsiAmb0.5
Principal sensory trigeminal nucleus dorsolateral partipsiPr5DL-0.5
Spinal vestibular nucleusipsiSpVe-0.5
Vestibular nucleiipsiVnc1
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract caudal partipsiSolca-0.5
Nucleus of the solitary tract commissural partipsiSolC2
Medial part of the commissural subnucleusipsiMSolC-0.5
Nucleus of the solitary tract dorsomedial partipsiSolDM2
Nucleus of the solitary tract intermediate partipsiSolIM0
Nucleus of the solitary tract lateral partipsiSolL3
Nucleus of the solitary tract medial partipsiSolM2
Raphe pallidus nucleusipsiRPa1
Caudal ventrolateral medullaipsiCVLM3
Caudal ventrolateral medulla lateral partipsiCVLMl3
Rostral ventrolateral medullaipsiRVLM4
Dorsal column nucleiipsiDCN3
Cuneate nucleusipsiCu4
Cuneate nucleus rostral partipsiCuRo-0.5
Gracile nucleus principal partipsiGr-0.5
External cuneate nucleusipsiECu2
Inferior olive dorsal nucleusipsiIOD1
Paragigantocellular reticular nucleusipsiPGi1
Lateral paragigantocellular nucleusipsiLPGi-0.5
Paragigantocellular reticular nucleus medial partipsiPGiM-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm2
Medial septal nucleusipsiMS-0.5
Substantia innominata dorsal partipsiSID1
HypothalamusipsiHYPO1
Dorsal regionipsiDHR-0.5
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area anterior partipsiLHAa0.5
Lateral hypothalamic area posterior partipsiLHAp0.5
Medial division of the hypothalamusipsiMdH3
Posterior hypothalamic areaipsiPHA1
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleusipsiPC2
Parafascicular thalamic nucleusipsiPF0.5
Posterior thalamic nuclear groupipsiPo2
Posterior thalamic nuclear group triangular partipsiPoT3
Mediodorsal thalamic nucleusipsiMD0.5
Submedius thalamic nucleusipsiSub0.5
Paraventricular thalamic nucleus caudal partipsiPVca0.5
Paraventricular thalamic nucleus ventral partipsiPVV0.5
Reuniens thalamic nucleusipsiRe0.5
Ventrolateral thalamic nucleusipsiVL1
Ventral posterior thalamic nucleus parvicellular partipsiVPPC1
Ventrobasal complexipsiVB1.5
Ventral posterolateral thalamic nucleusipsiVPL2
Ventral posteromedial thalamic nucleusipsiVPM1
Ventromedial thalamic nucleusipsiVM0.5
Intralaminar nucleiipsiILN2
Lateral posterior thalamic nucleusipsiLP2
Laterodorsal thalamic nucleusipsiLD2
Medial thalamic zoneipsiMTZ3
Posterior groupipsiPTG1
Subparafascicular thalamic nucleusipsiSPF1
Zona incertaipsiZI0.5
Cuneate fasciculusipsicu-2
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC-0.5
Basolateral amygdaloid nucleusipsiBL0.5
Central amygdaloid nucleusipsiCe0.5
Basal gangliaipsiBG-0.5
Globus pallidusipsiGP1
Ventral pallidumipsiVP-0.5
Accumbens nucleusipsiAc1
Infralimbic cortexipsiIL-0.5
Medial orbital cortexipsiMO-0.5
Septal regionipsiSER1
Lateral septal nucleusipsiLS-0.5
Cervical segment 1ipsiCS13
Lateral cervical nucleus C1ipsiLatCC1-0.5
Cervical segment 2ipsiCS23
Lateral cervical nucleus C2ipsiLatCC2-0.5
Cervical segment 3ipsiCS33
Lateral cervical nucleus C3ipsiLatCC3-0.5
Cervical segment 4ipsiCS43
Lateral cervical nucleus C4ipsiLatCC4-0.5
Cervical segment 5ipsiCS53
Interneuron groups of layer 9 C5ipsiiGL9C5-0.5
Motoneuron groups of layer 9 C5ipsiMGL9C5-0.5
Cervical segment 6ipsiCS63
Interneuron groups of layer 9 C6ipsiiGL9C6-0.5
Motoneuron groups of layer 9 C6ipsiMGL9C6-0.5
Cervical segment 7ipsiCS73
Interneuron groups of layer 9 C7ipsiiGL9C7-0.5
Motoneuron groups of layer 9 C7ipsiMGL9C7-0.5
Spinal cord layer 9 C7ipsiSCL9C7-0.5
Cervical segment 8ipsiCS83
Interneuron groups of layer 9 C8ipsiiGL9C8-0.5
Motoneuron groups of layer 9 C8ipsiMGL9C8-0.5
Thoracal segment 1ipsiT13
Interneuron groups of layer 9 T1ipsiiGL9T1-0.5
Motoneuron groups of layer 9 T1ipsiMGL9T1-0.5
Thoracal segment 2ipsiT23
Spinal cord layers T2ipsiSCLT22
Thoracal segment 3ipsiT33
Thoracal segment 4ipsiT43
Thoracal segment 5ipsiT53
Thoracal segment 6ipsiT63
Thoracal segment 7ipsiT73
Thoracal segment 8ipsiT83
Thoracal segment 9ipsiT93
Thoracal segment 10ipsiT103
Thoracal segment 11ipsiT113
Thoracal segment 12ipsiT123
Thoracal segment 13ipsiT133
Lumbar segment 1ipsiL13
Spinal cord layer 9 L1ipsiSCL9L11
Lumbar segment 2ipsiL23
Spinal cord layer 9 L2ipsiSCL9L21
Lumbar segment 3ipsiL33
Spinal cord layer 9 L3ipsiSCL9L31
Lumbar segment 4ipsiL43
Lumbar segment 5ipsiL53
Lumbar segment 6ipsiL63
Sacral segment 1ipsiSa13
Sacral segment 2ipsiSa23
Sacral segment 3ipsiSa33
Sacral segment 4ipsiSa43
Coccygeal segment 1ipsiCo1-0.5
Coccygeal segment 2ipsiCo2-0.5
MesencephaloncontraMEC0.5
Central graycontraCG-0.5
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG2
Dorsal periaqueductal graycontraDPAG1
Dorsolateral periaqueductal graycontraDLPAG3
Lateral periaqueductal graycontraLPAG3
Periaqueductal gray dorsal partcontraPAGd1
Periaqueductal gray laterodorsal partcontraPAGLD1
Periaqueductal gray lateroventral partcontraPAGLV1
Periaqueductal gray medial partcontraPAGm1
Ventrolateral periaqueductal graycontraVLPAG2
Red nucleuscontraR-0.5
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Superior colliculus deep layerscontraSCd-0.5
Tegmental areacontraTGA-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Paraflocculus ventral partcontraPFlv-0.5
Ansiform lobule crus 1contraCrus13
Paramedian lobulecontraPM-0.5
Simple lobulecontraSim3
Cerebellar lobule 3contraCERL30
Cerebellar lobule 4contraCERL41.5
Cerebellar lobule 5contraCERL51.5
Paravermal region of anterior lobecontraPVAnL3
Cerebellar lobule 7contraCERL71.5
Cerebellar lobule 7acontraCERL7a1.5
Cerebellar lobule 7bcontraCERL7b1.5
Cerebellar lobule 8contraCERL81.5
Cerebellar lobule 9contraCERL91.5
Cerebellar lobule 6contraCERL61.5
Cerebellar lobule 6acontraCERL6a1.5
Cerebellar lobule 6bcontraCERL6b1.5
Cerebellar lobule 6ccontraCERL6c1.5
Cerebellar lobule 6dcontraCERL6d1.5
Posterior lobe vermiscontraPLVERM0
FlocculuscontraFl-0.5
Pontine reticular nucleus oral partcontraPnO3
Cuneiforme nucleuscontraCnF2
Parabrachial nucleuscontraPB3
Lateral parabrachial nucleuscontraLPB-0.5
Lateral parabrachial nucleus internal partcontraLPBI-0.5
Lateral parabrachial nucleus lateral partcontraLPBL1
Parabrachial nucleus central lateral partcontraPBCeL1
Parabrachial nucleus dorsolateral partcontraPBDL1
Parabrachial nucleus superior lateralcontraPBSL1
Gigantocellular reticular nucleuscontraGi3
Gigantocellular reticular nucleus lateral partcontraGirL3
Lateral reticular nucleuscontraLRt3
Lateral reticular nucleus lateral partcontraLRtL2
Subnucleus reticularis dorsaliscontraSRD1
Subnucleus reticularis ventralis medullae oblongataecontraSRV-0.5
Medullary reticular nucleus dorsal partcontraMdDd2
Principal sensory trigeminal nucleus dorsolateral partcontraPr5DL-0.5
Spinal vestibular nucleuscontraSpVe-0.5
Vestibular nucleicontraVnc3
Medial vestibular nucleus caudal partcontraMVeP-0.5
Nucleus of the solitary tractcontraSol1
Nucleus of the solitary tract commissural partcontraSolC1
Nucleus of the solitary tract dorsomedial partcontraSolDM0.5
Nucleus of the solitary tract intermediate partcontraSolIM0
Nucleus of the solitary tract lateral partcontraSolL2
Nucleus of the solitary tract medial partcontraSolM2
Raphe pallidus nucleuscontraRPa1
Caudal ventrolateral medullacontraCVLM2
Caudal ventrolateral medulla lateral partcontraCVLMl2
Rostral ventrolateral medullacontraRVLM2
Dorsal column nucleicontraDCN0.5
Cuneate nucleuscontraCu3
Inferior olivecontraIO2
Inferior olive dorsal nucleuscontraIOD3
Paragigantocellular reticular nucleuscontraPGi3
Lateral paragigantocellular nucleuscontraLPGi-0.5
Paragigantocellular reticular nucleus medial partcontraPGiM-0.5
Rostral part of the ventromedial medulla oblongatacontraRMeObvm2
Medial septal nucleuscontraMS-0.5
Substantia innominata dorsal partcontraSID1
HypothalamuscontraHYPO3
Lateral hypothalamic areacontraLH3
Lateral hypothalamic area anterior partcontraLHAa0.5
Lateral hypothalamic area posterior partcontraLHAp0.5
Medial division of the hypothalamuscontraMdH3
Posterior hypothalamic areacontraPHA1
Central medial thalamic nucleuscontraCM2.5
Centrolateral thalamic nucleuscontraCL3
Paracentral thalamic nucleuscontraPC2.5
Parafascicular thalamic nucleuscontraPF0.5
Lateral group of the dorsal thalamuscontraLAT1.5
Posterior thalamic nuclear groupcontraPo2
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT3
Mediodorsal thalamic nucleuscontraMD2
Submedius thalamic nucleuscontraSub0.5
Paraventricular thalamic nucleus caudal partcontraPVca0.5
Paraventricular thalamic nucleus ventral partcontraPVV0.5
Reuniens thalamic nucleuscontraRe0.5
Ventrolateral thalamic nucleuscontraVL3
Ventral posterior thalamic nucleus parvicellular partcontraVPPC1
Ventrobasal complexcontraVB3
Ventral posterolateral thalamic nucleuscontraVPL2
Ventral posteromedial thalamic nucleuscontraVPM1
Ventromedial thalamic nucleuscontraVM0.5
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Intralaminar nucleicontraILN2.5
Lateral posterior thalamic nucleuscontraLP2.5
Laterodorsal thalamic nucleuscontraLD2.5
Posterior groupcontraPTG3
Subparafascicular thalamic nucleuscontraSPF1
Zona incertacontraZI0.5
Pretectal regioncontraPRT-0.5
Anterior pretectal nucleuscontraAPT-0.5
Posterior pretectal nucleuscontraPPT-0.5
Lateral funiculuscontralf-2
Spinothalamic tractcontrastt-2
Amygdaloid complexcontraAC-0.5
Basolateral amygdaloid nucleuscontraBL0.5
Central amygdaloid nucleuscontraCe0.5
Globus palliduscontraGP1
Ventral pallidumcontraVP-0.5
Accumbens nucleuscontraAc2
Infralimbic cortexcontraIL-0.5
Medial orbital cortexcontraMO-0.5
Septal regioncontraSER2
Lateral septal nucleuscontraLS-0.5
Cervical segment 7contraCS7-1
Spinal cord layers T2contraSCLT21
Lumbar segment 1contraL1-0.5
Spinal cord layer 9 L1contraSCL9L10.5
Lumbar segment 2contraL2-0.5
Spinal cord layer 9 L2contraSCL9L20.5
Lumbar segment 3contraL3-0.5
Spinal cord layer 9 L3contraSCL9L30.5
Lumbar segment 4contraL4-0.5
Sacral segment 1contraSa1-0.5
Sacral segment 2contraSa2-0.5
Sacral segment 3contraSa3-0.5
Sacral segment 4contraSa4-0.5
Coccygeal segment 1contraCo1-0.5
Coccygeal segment 2contraCo2-0.5
Median nerveipsimen-0.5
Tibial nerveipsitibial-0.5
Ulnar nerveipsiuln-0.5
Median nervecontramen-0.5
Ulnar nervecontrauln-0.5
Forelimb distal musclesipsiMuscFod-0.5
Forelimb intermediate musclesipsiMuscFoi-0.5
Forelimb proximal musclesipsiMuscFoP-0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Red nucleusipsiR2.5
Red nucleus caudal partipsiRnCa3
Red nucleus dorsalipsiRDO-0.5
Red nucleus magnocellular partipsiRMC3
Red nucleus rostral partipsiRnRo3
Ventrolateral tegmental areaipsiVLTg2
Laterodorsal tegmental nucleusipsiLDTg-0.5
Pedunculopontine tegmental nucleusipsiPPTg3
Interstitial nucleus of CajalipsiInC1.5
A5 noradrenaline cellsipsiA53
A7 noradrenaline cellsipsiA72
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca0.5
Parapyramidal nucleusipsiPPy3
Reticular systemipsiRF-0.5
Magnocellular reticular nucleusipsiNRMC-0.5
Ventral reticular formationipsiVRF2
Ventrolateral reticular formationipsiVLRF-0.5
Mesencephalic reticular formationipsiMRF-0.5
Deep mesencephalic nucleusipsiDpMe-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Pontine reticular nucleus caudal partipsiPNC1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Subnucleus reticularis dorsalisipsiSRD3
Dorsal half of the subnucleus reticularis dorsalisipsiSRDDh-0.5
Dorsomedial part of the subnucleus reticularis dorsalisipsiSRDm-0.5
Medullary reticular nucleus dorsal partipsiMdDd4
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Ventral part of the medullary reticular nucleus dorsal partipsivMdDd4
Medullary reticular nucleus ventral partipsiMdV4
Subcoeruleus nucleusipsiSubC3
Boetzinger complexipsiBo0
Spinal trigeminal nucleus caudal partipsiSp5C2
Trigeminal ganglionipsi5Gn1
Nucleus of the solitary tractipsiSol2
Raphe magnus nucleusipsiRMg3
Raphe pallidus nucleusipsiRPa3
Caudal ventrolateral medulla lateral partipsiCVLMl3
Lateral part of the caudal ventrolateral medullaipsiLCVLM1
Cuneate nucleusipsiCu1
Cuneate nucleus dorsal partipsiCuD-0.5
External cuneate nucleusipsiECu-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm4
Lateral hypothalamic areaipsiLH1
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag0
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo1
A11 dopamine cellsipsiA11-0.5
Zona incertaipsiZI-0.5
Zona incerta medial partipsiZIm-0.5
Zona incerta rostromedial partipsiZIrm0
Somatomotoric regionsipsiSMR-0.5
Lateral agranular prefrontal cortexipsiAGl1
Forelimb motor cortexipsiFMCx1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS11
Secondary somatosensory cortexipsiS21
Lateral spinal nucleusipsiMESLn-0.5
Dorsal root ganglion C7ipsiDRGC7-0.5
Area X T1ipsiSCL10T1-0.5
Spinal cord layer 5 T1ipsiSCL5T1-0.5
Spinal cord layer 6 T1ipsiSCL6T1-0.5
Spinal cord layer 3 T1ipsiSCL3T1-0.5
Spinal cord layer 4 T1ipsiSCL4T1-0.5
Spinal cord layer 1 T1ipsiSCL1T1-0.5
Spinal cord layer 2 T1ipsiSCL2T1-0.5
Spinal cord layer 7 T1ipsiSCL7T1-0.5
Spinal cord layer 8 T1ipsiSCL8T1-0.5
Area X T2ipsiSCL10T2-0.5
Spinal cord layer 5 T2ipsiSCL5T2-0.5
Spinal cord layer 6 T2ipsiSCL6T2-0.5
Spinal cord layer 3 T2ipsiSCL3T2-0.5
Spinal cord layer 4 T2ipsiSCL4T2-0.5
Spinal cord layer 1 T2ipsiSCL1T2-0.5
Spinal cord layer 2 T2ipsiSCL2T2-0.5
Spinal cord layer 7 T2ipsiSCL7T2-0.5
Spinal cord layer 8 T2ipsiSCL8T2-0.5
Area X T3ipsiSCL10T3-0.5
Spinal cord layer 5 T3ipsiSCL5T3-0.5
Spinal cord layer 6 T3ipsiSCL6T3-0.5
Spinal cord layer 3 T3ipsiSCL3T3-0.5
Spinal cord layer 4 T3ipsiSCL4T3-0.5
Spinal cord layer 1 T3ipsiSCL1T3-0.5
Spinal cord layer 2 T3ipsiSCL2T3-0.5
Spinal cord layer 7 T3ipsiSCL7T3-0.5
Spinal cord layer 8 T3ipsiSCL8T3-0.5
Thoracal segment 4ipsiT4-0.5
Area X T4ipsiSCL10T4-0.5
Spinal cord layer 5 T4ipsiSCL5T4-0.5
Spinal cord layer 6 T4ipsiSCL6T4-0.5
Spinal cord layer 3 T4ipsiSCL3T4-0.5
Spinal cord layer 4 T4ipsiSCL4T4-0.5
Spinal cord layer 1 T4ipsiSCL1T4-0.5
Spinal cord layer 2 T4ipsiSCL2T4-0.5
Spinal cord layer 7 T4ipsiSCL7T4-0.5
Spinal cord layer 8 T4ipsiSCL8T4-0.5
Thoracal segment 5ipsiT5-0.5
Thoracal segment 6ipsiT6-0.5
Thoracal segment 7ipsiT7-0.5
Thoracal segment 8ipsiT8-0.5
Thoracal segment 9ipsiT9-0.5
Thoracal segment 10ipsiT10-0.5
Thoracal segment 11ipsiT11-0.5
Thoracal segment 12ipsiT12-0.5
Thoracal segment 13ipsiT13-0.5
Lumbar segment 1ipsiL1-0.5
Lumbar segment 2ipsiL2-0.5
Lumbar segment 3ipsiL3-0.5
Lumbar segment 4ipsiL4-0.5
Lumbar segment 5ipsiL5-0.5
Lumbar segment 6ipsiL6-0.5
Sacral segment 1ipsiSa1-0.5
Sacral segment 2ipsiSa2-0.5
Sacral segment 3ipsiSa3-0.5
Sacral segment 4ipsiSa4-0.5
Coccygeal segment 1ipsiCo1-0.5
Red nucleuscontraR0.5
Red nucleus dorsalcontraRDO-0.5
Red nucleus dorsomedial partcontraRdm-0.5
Red nucleus magnocellular part caudal regioncontraRMCC-0.5
Red nucleus ventrolateral partcontraRveL-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Intermediate gray layer of the superior colliculuscontraInG-0.5
Superior colliculus deep layerscontraSCd-0.5
Pedunculopontine tegmental nucleuscontraPPTg3
A5 noradrenaline cellscontraA51
A7 noradrenaline cellscontraA71
Locus coeruleuscontraLC1
Caudal part of ventral locus coeruleuscontraLCveca0.5
Magnocellular reticular nucleuscontraNRMC-0.5
Mesencephalic reticular formationcontraMRF-0.5
Pontine reticular nucleus caudal partcontraPNC0.5
Gigantocellular reticular nucleuscontraGi0.5
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Medullary reticular nucleus dorsal partcontraMdDd3
Ventral part of the medullary reticular nucleus dorsal partcontravMdDd3
Medullary reticular nucleus ventral partcontraMdV3
Subcoeruleus nucleuscontraSubC1
Spinal trigeminal nucleus caudal partcontraSp5C0
Trigeminal ganglioncontra5Gn1
Mandibular region of the trigeminal ganglion at the level of the entry of the mandibular nervecontra5GnMaEm1
Caudal area of the ophthalmomaxillary region of the trigeminal ganglioncontra5GnCOM1
Rostral area of the ophthalmomaxillary region of the trigeminal ganglioncontra5GnROM1
Superficial part of the trigeminal ganglioncontra5GnS1
Nucleus of the solitary tractcontraSol2
Caudal ventrolateral medulla lateral partcontraCVLMl2
Cuneate nucleuscontraCu0.5
Nucleus interfascicularis hypoglossicontraNIFH1
Rostral part of the ventromedial medulla oblongatacontraRMeObvm4
Zona incerta medial partcontraZIm-0.5
Frontal cortex area 2contraFr23
Parietal association cortexcontraPtA0.5
Insular cortexcontraICX0.5
Prefrontal cortexcontraPFC0.5
Lateral agranular prefrontal cortexcontraAGl3
Forelimb motor cortexcontraFMCx2
Primary somatosensory cortexcontraS13
Secondary somatosensory cortexcontraS23
Secondary visual cortexcontraV20.5
Thoracal segment 4contraT4-0.5
Thoracal segment 5contraT5-0.5
Thoracal segment 6contraT6-0.5
Thoracal segment 7contraT7-0.5
Thoracal segment 8contraT8-0.5
Thoracal segment 9contraT9-0.5
Thoracal segment 10contraT10-0.5
Thoracal segment 11contraT11-0.5
Thoracal segment 12contraT12-0.5
Thoracal segment 13contraT13-0.5
Lumbar segment 1contraL1-0.5
Lumbar segment 2contraL2-0.5
Lumbar segment 3contraL3-0.5
Lumbar segment 4contraL4-0.5
Lumbar segment 5contraL5-0.5
Lumbar segment 6contraL6-0.5
Sacral segment 1contraSa1-0.5
Sacral segment 2contraSa2-0.5
Sacral segment 3contraSa3-0.5
Sacral segment 4contraSa4-0.5
Coccygeal segment 1contraCo1-0.5
Greater occipital nerveipsiPNSgo-0.5
Deep muscle branch of the radial nerveipsiraddm2
Forepaw digit 4ipsiOrgFLD41
Forepaw digit 5ipsiOrgFLD51

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications