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Rat connectome



Area X C3 left


Abbreviation
SCL10C3
Color       
Superior regionsSpinal cord layers C3

SynonymsAbbr.Language
Area X C3SCL10C3Eng
Lamina X C3SCL10C3Eng
Lamina 10 C3SCL10C3Eng
Rexed X C3SCL10C3Eng
Rexed 10 C3SCL10C3Eng
Spinal cord layer 10 C3SCL10C3Eng

Output to

NameSideAbbr.WeightDetails
Central grayipsiCG1
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray lateroventral partipsiPAGLV0.5
Ventrolateral periaqueductal grayipsiVLPAG0.5
Inferior colliculusipsiICOL1
Superior colliculusipsiSC1
Tegmental areaipsiTGA-0.5
Anterior lobeipsiAnL1
Locus coeruleusipsiLC-0.5
Reticular systemipsiRF-0.5
Mesencephalic reticular formationipsiMRF1
Pontine reticular nucleusipsiPRN-0.5
Cuneiforme nucleusipsiCnF-0.5
Parabrachial nucleusipsiPB2
Koelliker Fuse nucleusipsiKF-0.5
Lateral parabrachial nucleus lateral partipsiLPBL1
Parabrachial nucleus central lateral partipsiPBCeL0
Parabrachial nucleus dorsolateral partipsiPBDL0
Parabrachial nucleus superior lateralipsiPBSL0
Gigantocellular reticular nucleusipsiGi-0.5
Lateral reticular nucleusipsiLRt1
Medullary reticular nucleusipsiMdD-0.5
Subnucleus reticularis dorsalisipsiSRD3
Subnucleus reticularis ventralis medullae oblongataeipsiSRV-0.5
Medullary reticular nucleus dorsal partipsiMdDd3
Subcoeruleus nucleusipsiSubC-0.5
Principal sensory trigeminal nucleus dorsolateral partipsiPr5DL-0.5
Spinal trigeminal nucleus caudal part dorsal divisionipsiSp5Cd1
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract caudal partipsiSolca-0.5
Nucleus of the solitary tract commissural partipsiSolC-0.5
Nucleus of the solitary tract lateral partipsiSolL1
Nucleus of the solitary tract medial partipsiSolM1
Raphe pallidus nucleusipsiRPa1
Dorsal column nucleiipsiDCN-0.5
Cuneate nucleusipsiCu1
GracileipsiGra1
Gracile nucleus principal partipsiGr-0.5
Inferior olive dorsal nucleusipsiIOD1
Lateral paragigantocellular nucleusipsiLPGi-0.5
Paragigantocellular reticular nucleus medial partipsiPGiM-0.5
Nucleus of the vertical limb of the diagonal bandipsiVDB-0.5
Medial septal nucleusipsiMS-0.5
HypothalamusipsiHYPO1
Preoptic anterior regionipsiPAreg2
Lateral hypothalamic areaipsiLH1.5
Medial division of the hypothalamusipsiMdH1
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1.5
Posterior hypothalamic areaipsiPHA1
Paraventricular hypothalamic nucleusipsiPa1.5
Suprachiasmatic nucleusipsiSCh1.5
Supraoptic nucleus [Supraoptic region]ipsiSO1.5
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL1
Paracentral thalamic nucleusipsiPC1
Ventrobasal complexipsiVB1
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Ventral posteromedial thalamic nucleusipsiVPM-0.5
Intralaminar nucleiipsiILN1
Lateral posterior thalamic nucleusipsiLP1
Laterodorsal thalamic nucleusipsiLD1
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC-0.5
Basal gangliaipsiBG-0.5
Globus pallidusipsiGP-0.5
Ventral pallidumipsiVP-0.5
Accumbens nucleusipsiAc1
Infralimbic cortexipsiIL-0.5
Medial orbital cortexipsiMO-0.5
Septal regionipsiSER1
Lateral septal nucleusipsiLS-0.5
Interneuron groups of layer 9 C1ipsiiGL9C1-0.5
Motoneuron groups of layer 9 C1ipsiMGL9C1-0.5
Interneuron groups of layer 9 C2ipsiiGL9C2-0.5
Motoneuron groups of layer 9 C2ipsiMGL9C2-0.5
Interneuron groups of layer 9 C3ipsiiGL9C3-0.5
Motoneuron groups of layer 9 C3ipsiMGL9C3-0.5
Interneuron groups of layer 9 C4ipsiiGL9C4-0.5
Motoneuron groups of layer 9 C4ipsiMGL9C4-0.5
Interneuron groups of layer 9 C5ipsiiGL9C5-0.5
Motoneuron groups of layer 9 C5ipsiMGL9C5-0.5
Lumbar segmentsipsiLSeg3
Lumbar segment 1ipsiL1-0.5
Spinal cord layer 9 L1ipsiSCL9L12
Lumbar segment 2ipsiL2-0.5
Spinal cord layer 9 L2ipsiSCL9L22
Lumbar segment 3ipsiL3-0.5
Spinal cord layer 9 L3ipsiSCL9L32
Lumbar segment 4ipsiL4-0.5
Area X L4ipsiSCL10L41
Spinal cord layer 8 L4ipsiSCL8L41
Lumbar segment 5ipsiL5-0.5
Sacral segment 1ipsiSa1-0.5
Sacral segment 2ipsiSa2-0.5
Sacral segment 3ipsiSa3-0.5
Sacral segment 4ipsiSa4-0.5
Coccygeal segment 1ipsiCo1-0.5
Coccygeal segment 2ipsiCo2-0.5
Central graycontraCG-0.5
Nucleus of DarkschewitschcontraDk-0.5
Periaqueductal graycontraPAG2
Lateral periaqueductal graycontraLPAG0.5
Periaqueductal gray dorsal partcontraPAGd1
Periaqueductal gray laterodorsal partcontraPAGLD1
Periaqueductal gray lateroventral partcontraPAGLV1
Periaqueductal gray medial partcontraPAGm1
Ventrolateral periaqueductal graycontraVLPAG0.5
Red nucleuscontraR-0.5
Inferior colliculuscontraICOL3
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC3
Tegmental areacontraTGA-0.5
Edinger Westphal nucleuscontraEW-0.5
Mesencephalic reticular formationcontraMRF3
Deep mesencephalic nucleuscontraDpMe1
Cuneiforme nucleuscontraCnF3
Parabrachial nucleuscontraPB3
Koelliker Fuse nucleuscontraKF-0.5
Lateral parabrachial nucleus lateral partcontraLPBL1
Parabrachial nucleus central lateral partcontraPBCeL1
Parabrachial nucleus dorsolateral partcontraPBDL1
Parabrachial nucleus superior lateralcontraPBSL1
Gigantocellular reticular nucleus lateral partcontraGirL1
Lateral reticular nucleuscontraLRt3
Caudal part to the midportion of the lateral reticular nucleuscontraCaLRtMp0.5
Caudal third of the caudomedial part of the lateral reticular nucleuscontraLRtcmCt0.5
Subnucleus reticularis dorsaliscontraSRD3
Subnucleus reticularis ventralis medullae oblongataecontraSRV-0.5
Medullary reticular nucleus dorsal partcontraMdDd3
Principal sensory trigeminal nucleus dorsolateral partcontraPr5DL-0.5
Spinal trigeminal nucleus caudal part dorsal divisioncontraSp5Cd1
Nucleus of the solitary tractcontraSol-0.5
Nucleus of the solitary tract lateral partcontraSolL1
Nucleus of the solitary tract medial partcontraSolM1
Raphe pallidus nucleuscontraRPa1
Dorsal column nucleicontraDCN-0.5
Cuneate nucleuscontraCu3
Inferior olive dorsal nucleuscontraIOD3
Lateral paragigantocellular nucleuscontraLPGi-0.5
Paragigantocellular reticular nucleus medial partcontraPGiM-0.5
Nucleus of the vertical limb of the diagonal bandcontraVDB-0.5
Medial septal nucleuscontraMS-0.5
HypothalamuscontraHYPO3
Preoptic anterior regioncontraPAreg2
Lateral hypothalamic areacontraLH3
Medial division of the hypothalamuscontraMdH1.5
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Posterior hypothalamic areacontraPHA1
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
Central medial thalamic nucleuscontraCM1.5
Centrolateral thalamic nucleuscontraCL1.5
Paracentral thalamic nucleuscontraPC1.5
Ventrobasal complexcontraVB-0.5
Ventral posterolateral thalamic nucleuscontraVPL-0.5
Ventral posteromedial thalamic nucleuscontraVPM-0.5
Intralaminar nucleicontraILN1.5
Lateral posterior thalamic nucleuscontraLP1.5
Laterodorsal thalamic nucleuscontraLD1.5
Anterior pretectal nucleuscontraAPT-0.5
Posterior pretectal nucleuscontraPPT-0.5
Dorsolateral funiculuscontradlft-2
Amygdaloid complexcontraAC-0.5
Globus palliduscontraGP-0.5
Ventral pallidumcontraVP-0.5
Accumbens nucleuscontraAc2
Infralimbic cortexcontraIL-0.5
Medial orbital cortexcontraMO-0.5
Septal regioncontraSER2
Lateral septal nucleuscontraLS-0.5
Lumbar segmentscontraLSeg3
Spinal cord layer 9 L1contraSCL9L11
Spinal cord layer 9 L2contraSCL9L21
Spinal cord layer 9 L3contraSCL9L31
Area X L4contraSCL10L41
Spinal cord layer 8 L4contraSCL8L41
Sacral segment 1contraSa1-0.5
Sacral segment 2contraSa2-0.5
Sacral segment 3contraSa3-0.5
Sacral segment 4contraSa4-0.5
Coccygeal segment 1contraCo1-0.5
Coccygeal segment 2contraCo2-0.5
CoripsiOrgsCor-0.5
DiaphragmaipsiMuscDia-0.5
Intercostal muscleipsiMusciC-0.5
DiaphragmacontraMuscDia-0.5
Intercostal musclecontraMusciC-0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
A5 noradrenaline cellsipsiA52
A7 noradrenaline cellsipsiA72
Locus coeruleusipsiLC3
Locus coeruleus caudal partipsiLCca-0.5
Locus coeruleus ventral partipsiLCv-0.5
Magnocellular reticular nucleusipsiNRMC-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Mesencephalic reticular formationipsiMRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Pontine reticular nucleus caudal partipsiPNC1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi2
Subnucleus reticularis dorsalisipsiSRD3
Medial medullary reticular nucleusipsiMMdD3
Medial subnucleus reticularis ventralisipsiMSRV1
Medullary reticular nucleus dorsal partipsiMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Boetzinger complexipsiBo0
Nucleus of the solitary tract intermediate partipsiSolIM3
Nucleus of the solitary tract ventral partipsiSolV3
Nucleus of the solitary tract ventrolateral partipsiSolVL3
Raphe magnus nucleusipsiRMg-0.5
Rostral ventrolateral medullaipsiRVLM3
Ventral respiratory groupipsiVReG-0.5
Nucleus interfascicularis hypoglossiipsiNIFH-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm3
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area posterior partipsiLHAp3
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Paraventricular hypothalamic nucleusipsiPa1
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag0
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo2
A11 dopamine cellsipsiA11-0.5
Zona incertaipsiZI-0.5
Zona incerta medial partipsiZIm-0.5
Zona incerta rostromedial partipsiZIrm0
Cingulate cortex area 3 vasoregulatory region layer 3ipsiCg3vrL33
Cingulate cortex area 3 vasoregulatory region layer 4ipsiCg3vrL43
Cingulate cortex area 3 vasoregulatory region layer 5ipsiCg3vrL53
Cingulate cortex area 3 vasoregulatory region layer 6ipsiCg3vrL63
Lateral agranular prefrontal cortexipsiAGl1
Forelimb motor cortexipsiFMCx1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS11
Secondary somatosensory cortexipsiS21
Lateral spinal nucleusipsiMESLn-0.5
Dorsal root ganglion C3ipsiDRGC32
Thoracal segment 4ipsiT4-0.5
Thoracal segment 5ipsiT5-0.5
Thoracal segment 6ipsiT6-0.5
Thoracal segment 7ipsiT7-0.5
Thoracal segment 8ipsiT8-0.5
Thoracal segment 9ipsiT9-0.5
Thoracal segment 10ipsiT10-0.5
Thoracal segment 11ipsiT11-0.5
Thoracal segment 12ipsiT12-0.5
Thoracal segment 13ipsiT13-0.5
Lumbar segment 1ipsiL1-0.5
Lumbar segment 2ipsiL2-0.5
Lumbar segment 3ipsiL3-0.5
Lumbar segment 4ipsiL4-0.5
Lumbar segment 5ipsiL5-0.5
Lumbar segment 6ipsiL6-0.5
Sacral segment 1ipsiSa1-0.5
Sacral segment 2ipsiSa2-0.5
Sacral segment 3ipsiSa3-0.5
Sacral segment 4ipsiSa4-0.5
Coccygeal segment 1ipsiCo1-0.5
Locus coeruleuscontraLC3
Magnocellular reticular nucleuscontraNRMC-0.5
Mesencephalic reticular formationcontraMRF-0.5
Pontine reticular nucleus caudal partcontraPNC1
Cuneiforme nucleuscontraCnF-2
Gigantocellular reticular nucleuscontraGi0.5
Medial medullary reticular nucleuscontraMMdD3
Medial subnucleus reticularis ventraliscontraMSRV1
Ventral respiratory groupcontraVReG-0.5
Nucleus interfascicularis hypoglossicontraNIFH-0.5
Zona incerta medial partcontraZIm-0.5
Dorsolateral funiculuscontradlft-2
Cingulate cortex area 3 vasoregulatory region layer 3contraCg3vrL33
Cingulate cortex area 3 vasoregulatory region layer 4contraCg3vrL43
Cingulate cortex area 3 vasoregulatory region layer 5contraCg3vrL53
Cingulate cortex area 3 vasoregulatory region layer 6contraCg3vrL63
Lateral agranular prefrontal cortexcontraAGl-0.5
Primary somatosensory cortexcontraS11
Thoracal segment 4contraT4-0.5
Thoracal segment 5contraT5-0.5
Thoracal segment 6contraT6-0.5
Thoracal segment 7contraT7-0.5
Thoracal segment 8contraT8-0.5
Thoracal segment 9contraT9-0.5
Thoracal segment 10contraT10-0.5
Thoracal segment 11contraT11-0.5
Thoracal segment 12contraT12-0.5
Thoracal segment 13contraT13-0.5
Lumbar segment 1contraL1-0.5
Lumbar segment 2contraL2-0.5
Lumbar segment 3contraL3-0.5
Lumbar segment 4contraL4-0.5
Lumbar segment 5contraL5-0.5
Lumbar segment 6contraL6-0.5
Sacral segment 1contraSa1-0.5
Sacral segment 2contraSa2-0.5
Sacral segment 3contraSa3-0.5
Sacral segment 4contraSa4-0.5
Coccygeal segment 1contraCo1-0.5
Phrenic nerveipsiphren-0.5
Anterior subdiaphragmatic branch of the vagus nerveipsiASD10-0.5
Posterior subdiaphragmatic branch of the vagus nerveipsiPSD10-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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