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Rat connectome



Spinal cord layer 4 L1 right


Abbreviation
SCL4L1
Color       
Superior regionsNucleus proprius L1

SynonymsAbbr.Language
Spinal cord layer 4 L1SCL4L1Eng

SubregionsSide
Intermediate portion of spinal cord layer 4 L1right
Medial portion of spinal cord layer 4 L1right

Output to

NameSideAbbr.WeightDetails
MesencephaloncontraMEC0.5
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG-0.5
Lateral periaqueductal graycontraLPAG0.5
Periaqueductal gray dorsal partcontraPAGd1
Periaqueductal gray lateroventral partcontraPAGLV1
Ventrolateral periaqueductal graycontraVLPAG2
Red nucleuscontraR-0.5
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Paramedian lobulecontraPM1
Anterior lobecontraAnL1
Cerebellar lobule 2contraCERL21
Cerebellar lobule 3contraCERL31
Cerebellar lobule 1contraCERL11
Cerebellar lobule 4contraCERL41
Cerebellar lobule 5contraCERL51
Caudal part of cerebellumcontraCERCca1
Cerebellar lobule 8contraCERL81
Deep mesencephalic nucleuscontraDpMe1
Cuneiforme nucleuscontraCnF3
Parabrachial nucleuscontraPB2
Lateral parabrachial nucleuscontraLPB0.5
Lateral parabrachial nucleus lateral partcontraLPBL1
Parabrachial nucleus central lateral partcontraPBCeL1
Parabrachial nucleus dorsolateral partcontraPBDL1
Parabrachial nucleus superior lateralcontraPBSL1
Gigantocellular reticular nucleuscontraGi-0.5
Lateral reticular nucleuscontraLRt3
Caudolateral part of the lateral reticular nucleuscontraLRtCL1
Medullary reticular nucleuscontraMdD-0.5
Medullary reticular nucleus dorsal partcontraMdDd2
Parvicellular reticular nucleuscontraPCRt-0.5
Spinal vestibular nucleuscontraSpVe-0.5
Nucleus of the solitary tractcontraSol3
Nucleus of the solitary tract lateral partcontraSolL2
Nucleus of the solitary tract medial partcontraSolM2
Caudal ventrolateral medullacontraCVLM1
Caudal ventrolateral medulla lateral partcontraCVLMl2
A1 noradrenergic cellscontraA13
A2 noradrenergic cellscontraA22
Dorsal column nucleicontraDCN0.5
Cuneate nucleuscontraCu-0.5
Nucleus ZcontraZ1
Lateral paragigantocellular nucleuscontraLPGi-0.5
Paragigantocellular reticular nucleus medial partcontraPGiM-0.5
Lateral hypothalamic areacontraLH3
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
Lateral group of the dorsal thalamuscontraLAT1.5
Posterior thalamic nuclear groupcontraPo2
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT2
Mediodorsal thalamic nucleuscontraMD2
Ventral posterolateral thalamic nucleuscontraVPL-0.5
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Pretectal regioncontraPRT-0.5
Anterior pretectal nucleuscontraAPT-0.5
Posterior pretectal nucleuscontraPPT-0.5
Dorsolateral funiculuscontradlft-2
Accumbens nucleuscontraAc2
Septal regioncontraSER2
Cervical segment 1contraCS11
Cervical segment 2contraCS21
Cervical segment 3contraCS31
Spinal cord layers C3contraSCLC3-0.5
Cervical segment 4contraCS41
Cervical segment 5contraCS51
Cervical segment 6contraCS61
Cervical segment 7contraCS71
Cervical segment 8contraCS81
Thoracal segment 1contraT11
Thoracal segment 2contraT21
Thoracal segment 3contraT31
Thoracal segment 4contraT41
Thoracal segment 5contraT51
Thoracal segment 6contraT61
Thoracal segment 7contraT71
Thoracal segment 8contraT81
Thoracal segment 9contraT91
Thoracal segment 10contraT101
Thoracal segment 11contraT111
Thoracal segment 12contraT121
Thoracal segment 13contraT131
Lumbar segment 1contraL11
Lumbar segment 2contraL21
Lumbar segment 3contraL31
Lumbar segment 4contraL41
Lumbar segment 5contraL51
Lumbar segment 6contraL61
Sacral segment 1contraSa11
Sacral segment 2contraSa21
Sacral segment 3contraSa31
Sacral segment 4contraSa41
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray lateroventral partipsiPAGLV0.5
Ventrolateral periaqueductal grayipsiVLPAG1.5
Paramedian lobuleipsiPM1
Anterior lobeipsiAnL1
Cerebellar lobule 2ipsiCERL23
Cerebellar lobule 3ipsiCERL33
Cerebellar lobule 1ipsiCERL13
Cerebellar lobule 4ipsiCERL43
Cerebellar lobule 5ipsiCERL53
Caudal part of cerebellumipsiCERCca1
Cerebellar lobule 7ipsiCERL7-0.5
Cerebellar lobule 8ipsiCERL83
Cerebellar lobule 6ipsiCERL6-0.5
Cuneiforme nucleusipsiCnF1.5
Parabrachial nucleusipsiPB1.5
Lateral parabrachial nucleusipsiLPB1
Lateral parabrachial nucleus internal partipsiLPBI2
Lateral parabrachial nucleus lateral partipsiLPBL0
Parabrachial nucleus central lateral partipsiPBCeL0
Parabrachial nucleus dorsolateral partipsiPBDL0
Parabrachial nucleus superior lateralipsiPBSL0
Caudal bulbar reticular formationipsiCBRF-0.5
Gigantocellular reticular nucleusipsiGi2
Lateral reticular nucleusipsiLRt2
Medullary reticular nucleusipsiMdD-0.5
Subnucleus reticularis dorsalisipsiSRD2
Medullary reticular nucleus dorsal partipsiMdDd3
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd1
Parvicellular reticular nucleusipsiPCRt-0.5
Spinal vestibular nucleusipsiSpVe-0.5
Nucleus of the solitary tractipsiSol1
Nucleus of the solitary tract commissural partipsiSolC-0.5
Nucleus of the solitary tract lateral partipsiSolL3
Nucleus of the solitary tract medial partipsiSolM2
Caudal ventrolateral medullaipsiCVLM1
Caudal ventrolateral medulla lateral partipsiCVLMl3
Rostral ventrolateral medullaipsiRVLM1
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA20.5
Dorsal column nucleiipsiDCN3
Cuneate nucleusipsiCu-0.5
Gracile nucleus lemniscal neuronsipsiGraLem-0.5
Gracile nucleus principal partipsiGr-0.5
Nucleus ZipsiZ3
Lateral paragigantocellular nucleusipsiLPGi2
Dorsal regionipsiDHR-0.5
Lateral hypothalamic areaipsiLH1.5
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1.5
Posterior hypothalamic areaipsiPHA-0.5
Paraventricular hypothalamic nucleusipsiPa1.5
Suprachiasmatic nucleusipsiSCh1.5
Supraoptic nucleus [Supraoptic region]ipsiSO1.5
Ventrobasal complexipsiVB1
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC-0.5
Basal gangliaipsiBG-0.5
Accumbens nucleusipsiAc1
Infralimbic cortexipsiIL-0.5
Medial orbital cortexipsiMO-0.5
Septal regionipsiSER1
Cervical segment 1ipsiCS13
Lateral cervical nucleus C1ipsiLatCC1-0.5
Cervical segment 2ipsiCS23
Lateral cervical nucleus C2ipsiLatCC2-0.5
Cervical segment 3ipsiCS33
Lateral cervical nucleus C3ipsiLatCC3-0.5
Spinal cord layers C3ipsiSCLC32
Cervical segment 4ipsiCS43
Lateral cervical nucleus C4ipsiLatCC4-0.5
Cervical segment 5ipsiCS53
Cervical segment 6ipsiCS63
Spinal cord layers C6ipsiSCLC62
Cervical segment 7ipsiCS73
Cervical segment 8ipsiCS83
Thoracal segment 1ipsiT13
Thoracal segment 2ipsiT23
Thoracal segment 3ipsiT33
Thoracal segment 4ipsiT43
Thoracal segment 5ipsiT53
Thoracal segment 6ipsiT63
Thoracal segment 7ipsiT73
Thoracal segment 8ipsiT83
Thoracal segment 9ipsiT93
Intermediolateral cell column T9ipsiIMLT9-0.5
Area X T9ipsiSCL10T9-0.5
Spinal cord layer 7 T9ipsiSCL7T9-0.5
Thoracal segment 10ipsiT103
Thoracal segment 11ipsiT113
Thoracal segment 12ipsiT123
Spinal cord layers T12ipsiSCLT122
Thoracal segment 13ipsiT133
Lumbar segment 1ipsiL13
Interneuron groups of layer 9 L1ipsiiGL9L1-0.5
Motoneuron groups of layer 9 L1ipsiMGL9L1-0.5
Lumbar segment 2ipsiL23
Lumbar segment 3ipsiL33
Dorsal root ganglion L3ipsiDRGL3-0.5
Lumbar segment 4ipsiL43
Dorsal root ganglion L4ipsiDRGL4-0.5
Lumbar segment 5ipsiL53
Dorsal root ganglion L5ipsiDRGL5-0.5
Spinal cord layers L5ipsiSCLL51
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL51
Lumbar segment 6ipsiL63
Dorsal root ganglion L6ipsiDRGL6-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL61
Sacral segment 1ipsiSa13
Sacral segment 2ipsiSa23
Sacral segment 3ipsiSa33
Sacral segment 4ipsiSa43
Sciatic nerveipsisci3
Tibial nerveipsitibial-0.5
CoripsiOrgsCor-0.5
StomachipsiOrgsStomS-1
EpididymiscontraOrgEpi-0.5
Hindpaw skinipsiOrgHPS3
EpididymisipsiOrgEpi-0.5

Input from

NameSideAbbr.WeightDetails
Pedunculopontine tegmental nucleuscontraPPTg3
A4 noradrenaline cellscontraA40
A5 noradrenaline cellscontraA51
A5 noradrenaline cells caudal partcontraA5C1
A5 noradrenaline cells rostral partcontraA5R1
A7 noradrenaline cellscontraA71
Locus coeruleuscontraLC3
Caudal part of ventral locus coeruleuscontraLCveca0.5
Rostroventrolateral reticular nucleuscontraRVL-0.5
Cuneiforme nucleuscontraCnF-2
Gigantocellular reticular nucleuscontraGi0.5
Subcoeruleus nucleuscontraSubC1
C2 adrenaline cellscontraC20
Nucleus of the solitary tract commissural partcontraSolC-0.5
Lateral most portion of the ventrolateral medullacontraLMVL-0.5
A1 noradrenergic cellscontraA11
A2 noradrenergic cellscontraA21
Nucleus interfascicularis hypoglossicontraNIFH1
Zona incerta medial partcontraZIm-0.5
Dorsolateral funiculuscontradlft-2
Frontal cortex area 2contraFr23
Parietal association cortexcontraPtA0.5
Insular cortexcontraICX0.5
Prefrontal cortexcontraPFC0.5
Lateral agranular prefrontal cortexcontraAGl3
Medial agranular prefrontal cortexcontraAGm3
Primary somatosensory cortexcontraS13
Secondary somatosensory cortexcontraS23
Somatomotoric regions layer 5contraSMRL51
Secondary visual cortexcontraV20.5
Dorsal root ganglion L1contraDRGL12
Spinal cord layer 3 L2contraSCL3L20.5
Spinal cord layer 4 L2contraSCL4L20.5
Spinal cord layer 2 L2contraSCL2L20.5
Spinal cord layer 3 L3contraSCL3L30.5
Spinal cord layer 4 L3contraSCL4L30.5
Spinal cord layer 2 L3contraSCL2L30.5
Spinal cord layer 3 L4contraSCL3L40.5
Spinal cord layer 4 L4contraSCL4L40.5
Spinal cord layer 2 L4contraSCL2L40.5
Central grayipsiCG1
Red nucleusipsiR2
Ventrolateral tegmental areaipsiVLTg1.5
Pedunculopontine tegmental nucleusipsiPPTg3
Interstitial nucleus of CajalipsiInC1.5
A4 noradrenaline cellsipsiA40
A5 noradrenaline cellsipsiA53
A5 noradrenaline cells caudal partipsiA5C2
A5 noradrenaline cells rostral partipsiA5R2
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca0.5
Rostroventrolateral reticular nucleusipsiRVL1
Ventrolateral reticular formationipsiVLRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi1
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Subcoeruleus nucleusipsiSubC3
C2 adrenaline cellsipsiC20
Nucleus of the solitary tract commissural partipsiSolC1
Raphe magnus nucleusipsiRMg2
Raphe pallidus nucleusipsiRPa3
Lateral most portion of the ventrolateral medullaipsiLMVL-0.5
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA21
Rostral part of the ventromedial medulla oblongataipsiRMeObvm1
Lateral hypothalamic areaipsiLH1
A11 dopamine cellsipsiA11-0.5
Zona incertaipsiZI-0.5
Zona incerta medial partipsiZIm-0.5
Zona incerta rostromedial partipsiZIrm0
Somatomotoric regionsipsiSMR-0.5
Lateral agranular prefrontal cortexipsiAGl3
Hindlimb motor cortex layer 5ipsiHMCxL5-0.5
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Somatomotoric regions layer 5ipsiSMRL51
Area X C4ipsiSCL10C4-0.5
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Spinal cord layer 4 C4ipsiSCL4C4-0.5
Spinal cord layer 7 C4ipsiSCL7C4-0.5
Spinal cord layer 8 C4ipsiSCL8C4-0.5
Area X C5ipsiSCL10C5-0.5
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Spinal cord layer 4 C5ipsiSCL4C5-0.5
Spinal cord layer 7 C5ipsiSCL7C5-0.5
Spinal cord layer 8 C5ipsiSCL8C5-0.5
Area X C6ipsiSCL10C6-0.5
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 4 C6ipsiSCL4C6-0.5
Spinal cord layer 7 C6ipsiSCL7C6-0.5
Spinal cord layer 8 C6ipsiSCL8C6-0.5
Area X T9ipsiSCL10T9-0.5
Spinal cord layer 5 T9ipsiSCL5T9-0.5
Spinal cord layer 6 T9ipsiSCL6T9-0.5
Spinal cord layer 3 T9ipsiSCL3T9-0.5
Spinal cord layer 4 T9ipsiSCL4T9-0.5
Spinal cord layer 1 T9ipsiSCL1T9-0.5
Spinal cord layer 2 T9ipsiSCL2T9-0.5
Spinal cord layer 7 T9ipsiSCL7T9-0.5
Spinal cord layer 8 T9ipsiSCL8T9-0.5
Area X T10ipsiSCL10T10-0.5
Spinal cord layer 5 T10ipsiSCL5T10-0.5
Spinal cord layer 6 T10ipsiSCL6T10-0.5
Spinal cord layer 3 T10ipsiSCL3T10-0.5
Spinal cord layer 4 T10ipsiSCL4T10-0.5
Spinal cord layer 1 T10ipsiSCL1T10-0.5
Spinal cord layer 2 T10ipsiSCL2T10-0.5
Spinal cord layer 7 T10ipsiSCL7T10-0.5
Spinal cord layer 8 T10ipsiSCL8T10-0.5
Area X T11ipsiSCL10T11-0.5
Spinal cord layer 5 T11ipsiSCL5T11-0.5
Spinal cord layer 6 T11ipsiSCL6T11-0.5
Spinal cord layer 3 T11ipsiSCL3T11-0.5
Spinal cord layer 4 T11ipsiSCL4T11-0.5
Spinal cord layer 1 T11ipsiSCL1T11-0.5
Spinal cord layer 2 T11ipsiSCL2T11-0.5
Spinal cord layer 7 T11ipsiSCL7T11-0.5
Spinal cord layer 8 T11ipsiSCL8T11-0.5
Area X T12ipsiSCL10T12-0.5
Spinal cord layer 5 T12ipsiSCL5T12-0.5
Spinal cord layer 6 T12ipsiSCL6T12-0.5
Spinal cord layer 3 T12ipsiSCL3T12-0.5
Spinal cord layer 4 T12ipsiSCL4T12-0.5
Spinal cord layer 1 T12ipsiSCL1T12-0.5
Spinal cord layer 2 T12ipsiSCL2T12-0.5
Spinal cord layer 7 T12ipsiSCL7T12-0.5
Spinal cord layer 8 T12ipsiSCL8T12-0.5
Area X T13ipsiSCL10T13-0.5
Spinal cord layer 5 T13ipsiSCL5T13-0.5
Spinal cord layer 6 T13ipsiSCL6T13-0.5
Spinal cord layer 3 T13ipsiSCL3T13-0.5
Spinal cord layer 4 T13ipsiSCL4T13-0.5
Spinal cord layer 1 T13ipsiSCL1T13-0.5
Spinal cord layer 2 T13ipsiSCL2T13-0.5
Spinal cord layer 7 T13ipsiSCL7T13-0.5
Spinal cord layer 8 T13ipsiSCL8T13-0.5
Dorsal root ganglion L1ipsiDRGL13
Dorsal root ganglion L2ipsiDRGL23
Spinal cord layer 3 L2ipsiSCL3L23
Spinal cord layer 4 L2ipsiSCL4L23
Spinal cord layer 1 L2ipsiSCL1L23
Spinal cord layer 2 L2ipsiSCL2L23
Dorsal root ganglion L3ipsiDRGL32
Spinal cord layer 3 L3ipsiSCL3L33
Spinal cord layer 4 L3ipsiSCL4L33
Spinal cord layer 1 L3ipsiSCL1L33
Spinal cord layer 2 L3ipsiSCL2L33
Dorsal root ganglion L4ipsiDRGL43
Spinal cord layer 3 L4ipsiSCL3L43
Spinal cord layer 4 L4ipsiSCL4L43
Spinal cord layer 1 L4ipsiSCL1L43
Spinal cord layer 2 L4ipsiSCL2L43
Dorsal root ganglion L5ipsiDRGL52
Dorsal root ganglion L6ipsiDRGL61
Inferior mesenteric plexusipsiAutoNimPx0.5
Femoral nerveipsifem2
Lateral femoral cutaneous nerveipsifemLC3
Peronal nerveipsiperonal3
Common peronal nerveipsicperonal0
Saphenus nerveipsisaph2
Sural nerveipsisural0
Muscle branch of femoral nerveipsifemm-0.5
Anterior femoral cutaneous nerveipsiafem2
Saphenous nerveipsispn-0.5
Sciatic nerveipsisci3
Tibial nerveipsitibial2
Hamstring nerveipsihamstri1
Gastrocnemius nerveipsigastrocn-0.5
Renal nerveipsirenn-0.5
Superior gluteal nerveipsisgluteal1
Obturator nerveipsiobturat2
Lateral plantar nerveipsilpn0
Medial plantar nerveipsimpn0
Gastrocnemius muscleipsiMuscGC-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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