University of Rostock

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Rat connectome



Periaqueductal gray caudal part left


Abbreviation
PAGc
Color       
Superior regionsPeriaqueductal gray

SynonymsAbbr.Language
Periaqueductal gray caudal partPAGcEng
Caudal periaqueductal gray part Eng
Caudal part of the periaqueductal gray  
Caudal level of the periaqueductal gray Eng
Caudal periaqueductal grey part Eng

SubregionsSide
Caudal periaqueductal gray ventrolateral regionleft
Caudal two-third of the periaqueductal grayleft
Lateral part of the caudal periaqueductal grayleft
Medial part of the caudal periaqueductal grayleft
Periaqueductal gray caudal halfleft
Periaqueductal gray caudal poleleft
Periaqueductal gray most caudal partleft
Ventrolateral part of the caudal periaqueductal grayleft

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG-0.5
Lateral periaqueductal grayipsiLPAG3
Gigantocellular reticular nucleus alpha partipsiGiA1
Raphe magnus nucleusipsiRMg3
Caudal ventrolateral medullaipsiCVLM1
Rostral ventrolateral medullaipsiRVLM-0.5
Paragigantocellular reticular nucleus medial partipsiPGiM3
Rostral ventral respiratory groupipsiRVRG3
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Arcuate nucleusipsiArc0.5
Retrochiasmatic areaipsiRCh1
Stria medullaris of the thalamusipsism-2
Central amygdaloid nucleusipsiCe0.5
Fornixipsif-2
Ventrolateral orbital areaipsiVLO1
Cervical segment 7ipsiCS73
Cervical segment 8ipsiCS83
Lumbar segment 2ipsiL21.5
Lumbar segment 3ipsiL31.5
Rostral ventral respiratory groupcontraRVRG3
Anteroventral periventricular nucleus [Anterior hypothalamic area]contraAVPe0.5
Arcuate nucleuscontraArc0.5
Retrochiasmatic areacontraRCh1
Stria medullaris of the thalamuscontrasm-2
Fornixcontraf-2
Ventrolateral orbital areacontraVLO-0.5

Input from

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG0.5
Dorsal periaqueductal gray caudal partipsiDPAGC2
Dorsolateral periaqueductal gray caudal partipsiPAGdlc2
Dorsolateral periaqueductal gray rostral partipsiPAGdlr2
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0
Ventrolateral periaqueductal gray rostral partipsiPAGvlr1
Ventral midbrain tegmentumipsiVeMT3
Transitional region between ventral tegmental area and the medial substantia nigra pars compactaipsiTRVTAmSNC3
Ventrolateral tegmental areaipsiVLTg3
Pontine reticular nucleusipsiPRN3
Parvicellular reticular nucleusipsiPCRt1
Parvicellular reticular nucleus rostral portionipsipRNr1
Rostral ventral respiratory groupipsiRVRG1
Rostral part of the ventromedial medulla oblongataipsiRMeObvm-0.5
Substantia innominataipsiSI2
Lateral preoptic areaipsiLPO2
Medial preoptic areaipsiMPA3
Medial preoptic area central partipsiMPAce3
Medial preoptic area dorsolateral partipsiMPADL3
Medial preoptic area lateral partipsiMPAL3
Medial preoptic area medial partipsiMPAm3
Median preoptic nucleusipsiMnPO-0.5
Dorsomedial hypothalamic nucleusipsiDMHy-0.5
Lateral zoneipsiLHA-0.5
Lateral hypothalamic areaipsiLH-0.5
Lateral hypothalamic area [Lateral zone tuberal level]ipsiLHtu1
Ventrolateral hypothalamic nucleusipsiVLH-0.5
Anterior hypothalamic areaipsiAHA-0.5
Anterior hypothalamic area caudal partipsiAHAca-0.5
Anterior hypothalamic area dorsal partipsiAHAd-0.5
Anterior hypothalamic area posterior partipsiAHAP1
Dorsal hypothalamic areaipsiDA-0.5
Ventromedial hypothalamic nucleusipsiVMH-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Suprachiasmatic nucleusipsiSCh-0.5
Supraoptic nucleus [Supraoptic region]ipsiSO-0.5
Premammillary nucleus dorsal partipsiPMD-0.5
Perifornical nucleusipsiPeF-0.5
Zona incertaipsiZI-0.5
Rostral portion of the zona incerta medial partipsiZImR2
Anterior basomedial nucleusipsiBMA1
Bed nucleus of the stria terminalis ventral tipipsiBNSTvt3
Caudal globus pallidusipsiGPc0.5
Parasubthalamic nucleusipsiPSTh2
Medial prefrontal cortexipsimPFC1.5
Precommissural nucleusipsiPrC-0.5
Spinal cord layer 1 C1ipsiSCL1C13
Spinal cord layer 2 C1ipsiSCL2C13
Spinal cord layer 1 C2ipsiSCL1C23
Spinal cord layer 2 C2ipsiSCL2C23
Spinal cord layer 1 C3ipsiSCL1C33
Spinal cord layer 1 C4ipsiSCL1C43
Spinal cord layer 1 C5ipsiSCL1C53
Spinal cord layer 1 C6ipsiSCL1C63
Spinal cord layer 1 C7ipsiSCL1C73
Spinal cord layer 1 C8ipsiSCL1C83
Spinal cord layer 1 T1ipsiSCL1T13
Spinal cord layer 1 T2ipsiSCL1T23
Spinal cord layer 1 T3ipsiSCL1T33
Spinal cord layer 1 T4ipsiSCL1T43
Spinal cord layer 1 T5ipsiSCL1T53
Spinal cord layer 1 T6ipsiSCL1T63
Spinal cord layer 1 T7ipsiSCL1T73
Spinal cord layer 1 T8ipsiSCL1T83
Spinal cord layer 1 T9ipsiSCL1T93
Spinal cord layer 1 T10ipsiSCL1T103
Spinal cord layer 1 T11ipsiSCL1T113
Spinal cord layer 1 T12ipsiSCL1T123
Spinal cord layer 1 T13ipsiSCL1T133
Spinal cord layer 1 L1ipsiSCL1L13
Spinal cord layer 1 L2ipsiSCL1L23
Spinal cord layer 1 L3ipsiSCL1L33
Spinal cord layer 3 L4ipsiSCL3L40
Spinal cord layer 4 L4ipsiSCL4L40
Spinal cord layer 1 L4ipsiSCL1L43
Spinal cord layer 1 L5ipsiSCL1L53
Spinal cord layer 1 L6ipsiSCL1L63
Spinal cord layer 1 S1ipsiSCL1S13
Spinal cord layer 1 S2ipsiSCL1S23
Spinal cord layer 1 S3ipsiSCL1S33
Spinal cord layer 1 S4ipsiSCL1S43
Periaqueductal graycontraPAG0.5
Dorsal periaqueductal gray caudal partcontraDPAGC2
Dorsolateral periaqueductal gray caudal partcontraPAGdlc1
Dorsolateral periaqueductal gray rostral partcontraPAGdlr1
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0.5
Rostral ventral respiratory groupcontraRVRG1
Medial preoptic area central partcontraMPAce-0.5
Medial preoptic area lateral partcontraMPAL-0.5
Medial preoptic area medial partcontraMPAm-0.5
Parasubthalamic nucleuscontraPSTh1.5
Spinal cord layer 1 C1contraSCL1C13
Spinal cord layer 2 C1contraSCL2C13
Spinal cord layer 1 C2contraSCL1C23
Spinal cord layer 2 C2contraSCL2C23
Spinal cord layer 1 C3contraSCL1C31
Spinal cord layer 1 C4contraSCL1C41
Spinal cord layer 1 C5contraSCL1C51
Spinal cord layer 1 C6contraSCL1C61
Spinal cord layer 1 C7contraSCL1C71
Spinal cord layer 1 C8contraSCL1C81
Spinal cord layer 1 T1contraSCL1T11
Spinal cord layer 1 T2contraSCL1T21
Spinal cord layer 1 T3contraSCL1T31
Spinal cord layer 1 T4contraSCL1T41
Spinal cord layer 1 T5contraSCL1T51
Spinal cord layer 1 T6contraSCL1T61
Spinal cord layer 1 T7contraSCL1T71
Spinal cord layer 1 T8contraSCL1T81
Spinal cord layer 1 T9contraSCL1T91
Spinal cord layer 1 T10contraSCL1T101
Spinal cord layer 1 T11contraSCL1T111
Spinal cord layer 1 T12contraSCL1T121
Spinal cord layer 1 T13contraSCL1T131
Spinal cord layer 1 L1contraSCL1L11
Spinal cord layer 1 L2contraSCL1L21
Spinal cord layer 1 L3contraSCL1L32
Spinal cord layer 3 L4contraSCL3L41
Spinal cord layer 4 L4contraSCL4L41
Spinal cord layer 1 L4contraSCL1L41
Spinal cord layer 1 L5contraSCL1L51
Spinal cord layer 1 L6contraSCL1L61
Spinal cord layer 1 S1contraSCL1S11
Spinal cord layer 1 S2contraSCL1S21
Spinal cord layer 1 S3contraSCL1S31
Spinal cord layer 1 S4contraSCL1S41

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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