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Rat connectome



Septofimbrial nucleus left


Abbreviation
SFi
Color       
Superior regionsPosterior septal complex

SynonymsAbbr.Language
Septofimbrial septal nucleus  
Septofimbrial nucleusSFiEng
 SFEng
Septofimbrial area Eng
Fimbrial septal nucleus Eng
Nucleus fimbrialis septi Eng

SubregionsSide
Septofimbrial nucleus anterodorsal partleft
Septofimbrial nucleus posteroventral partleft
Septofimbrial nucleus ventral partleft
Septofimbrial nucleus rostral partleft

Output to

NameSideAbbr.WeightDetails
Anteroposterior extension of the central gray mesencephalic partipsiCGMap1
Between anterior end of dorsal raphe and posterior ventral tegmental nucleus of the central gray mesencephalic partipsiCGMdrvtg1
Fasciculus retroflexusipsifr0
Posterodorsal tegmental nucleusipsiPDTg1
Ventral tegmental area A10ipsiVTA1
Adjacent parts of the ventral tegmental areaipsiVeMTap-0.5
Laterodorsal tegmental nucleusipsiLDTg1
Nucleus incertusipsiNI1
Nucleus incertus pars compactaipsiNIc2
Nucleus incertus pars dissipataipsiNId2
Dorsal cochlear nucleusipsiDC-0.5
Median raphe nucleusipsiMnR1
Paramedian raphe nucleusipsiPMnR-0.5
Pontine raphe nucleusipsiPnR-2
ProsencephalonipsiPRC0
Diagonal band of BrocaipsiDBB3
Angular part of the ventral diagonal bandipsiVDBVA3
Nucleus of the horizontal limb of the diagonal band medial edgeipsiHDBmE1
Medial septal nucleusipsiMS3
Medial septal nucleus medial partipsiMSm3
Cell bridge between tuberomammillary nucleus and caudal magnocellular nucleusipsiCbTuMcm-0.5
Lateral preoptic areaipsiLPO1
Lateral preoptic area dorsomedial to the supraoptic nucleus anterior partipsiLPOdmSOA1
Medial preoptic areaipsiMPA1
Nucleus medianus of the medial preoptic areaipsiMPAme-0.5
Ventral tuberomammillary nucleusipsiVTM-0.5
Vascular organ of the lamina terminalisipsiVOLT-0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC1
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR2
Lateral zoneipsiLHA1
Lateral hypothalamic area juxtadorsomedial regionipsiJDM2
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0.5
Tuberal magnocellular nucleusipsiTUmag0
Medial division of the hypothalamusipsiMdH1
Anterior hypothalamic areaipsiAHA1
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe1
Anterior hypothalamic nucleus rostral zoneipsiAHnR1
Caudal magnocellular nucleus main portionipsiCMCmp-0.5
Posterior hypothalamic nucleusipsiPH-0.5
Medial basal hypothalamusipsiMBH-0.5
Ventromedial hypothalamic nucleusipsiVMH1
Mediobasal hypothalamus anterior partipsiMeHypoAnt0.5
Mediobasal hypothalamus posterior partipsiMeHypoP1
Periventricular zoneipsiPVZ-0.5
Anterior periventricular nucleusipsiPeA-0.5
Arcuate nucleusipsiArc1
Paraventricular hypothalamic nucleusipsiPa2
Supraoptic nucleus anterior divisionipsiSOA1
Premammillary nucleus dorsal partipsiPMD-2
Premammillary nucleus ventral partipsiPMV-2
Supramammillar nucleusipsiSuM-0.5
Supramammillar nucleus lateral partipsiSuML3
Perifornical nucleusipsiPeF-2
Perifornical nucleus dorsal partipsiPeFD-0.5
Retrochiasmatic areaipsiRCh1.5
ThalamusipsiT1
Cell bridge between the central medial thalamic nucleus and the ventral tuberomammillary nucleusipsiCMmrLcV-0.5
Mediodorsal thalamic nucleusipsiMD3
Paratenial thalamic nucleusipsiPT-0.5
Paraventricular thalamic nucleusipsiPV1
Reuniens thalamic nucleus caudomedial divisionipsiRecm1
Reunienes thalamic nucleus rostromedial divisionipsiRerm2
Reuniens thalamic nucleus rostrolateral divisionipsiRerl2
HabenulaipsiHAB2
Habenular commissureipsihbc4
Lateral habenular nucleusipsiLHb1
Lateral habenular nucleus lateral partipsiLHbL1
Lateral habenular nucleus medial partipsiLHbM3
Medial habenular nucleusipsiMHb4
Medial habenular nucleus rostral partipsiMHbr2
Medial forebrain bundleipsimfb-0.5
Stria medullaris of the thalamusipsism3
Amygdaloid complexipsiAC1
HippocampusipsiHIPP1
Fornixipsif3
Medial prefrontal cortexipsimPFC1
Precommissural nucleusipsiPrC1
Interpeduncular nucleus rostral subnucleus central partipsiIPRce2
Triangular septal nucleusipsiTS-0.5
Posterodorsal tegmental nucleuscontraPDTg1
Ventral tegmental area A10contraVTA0.5
Laterodorsal tegmental nucleuscontraLDTg0.5
Nucleus incertuscontraNI-0.5
Nucleus incertus pars compactacontraNIc2
Nucleus incertus pars dissipatacontraNId2
Dorsal cochlear nucleuscontraDC-0.5
Median raphe nucleuscontraMnR0
Paraventricular hypothalamic nucleuscontraPa0
Lateral habenular nucleus medial partcontraLHbM3
Medial habenular nucleuscontraMHb0.5
Medial habenular nucleus rostral partcontraMHbr1

Input from

NameSideAbbr.WeightDetails
Ventrolateral periaqueductal grayipsiVLPAG-0.5
Ventral tegmental area A10ipsiVTA4
Laterodorsal tegmental nucleusipsiLDTg3
Locus coeruleusipsiLC0.5
Nucleus incertus pars compactaipsiNIc3
Nucleus incertus pars dissipataipsiNId3
Raphe nucleiipsiRAN3
Dorsal raphe nucleusipsiDR-0.5
Median raphe nucleusipsiMnR-0.5
Diagonal band of BrocaipsiDBB3
Medial septal nucleusipsiMS3
Medial septal nucleus medial partipsiMSm-2
Substantia innominataipsiSI2
Lateral preoptic areaipsiLPO2
Medial preoptic areaipsiMPA0
Medial preoptic area dorsolateral partipsiMPADL0
Dorsomedial hypothalamic nucleusipsiDMHy1
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC0.5
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0.5
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar1
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR1
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp0
Lateral zoneipsiLHA3
Area periventricularis hypothalamica dorsalisipsiAPD-0.5
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area juxtadorsomedial regionipsiJDM2
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm1
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0.5
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0.5
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa0
Lateral hypothalamic area perifornical partipsiPFx1
Tuberal nucleusipsiTU1
Anterior hypothalamic area central partipsiAHAC-2
Anterior hypothalamic area lateral partipsiAHAl-0.5
Anterior hypothalamic area posterior partipsiAHAP-1
Anterior hypothalamic nucleusipsiAHn1
Anterior part of the anterior hypothalamic nucleusipsiAHna-2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM1
Posterior hypothalamic areaipsiPHA1
Posterior hypothalamic nucleusipsiPH3
Ventromedial hypothalamic nucleusipsiVMH-0.5
Ventromedial hypothalamic nucleus dorsomedial partipsiVMHDM0.5
Periventricular zoneipsiPVZ-0.5
Mammillary bodyipsiCMAM-0.5
Supramammillar nucleusipsiSuM3
Retrochiasmatic area lateral partipsiRChL-2
Medial group of the dorsal thalamusipsiMED2
Mediodorsal thalamic nucleusipsiMD2
Medial habenular nucleusipsiMHb2
Medial habenular nucleus rostrocaudal partipsiMHbrc3
Bed nucleus of the stria terminalis ventral tipipsiBNSTvt0
Amygdalohippocampal areaipsiAHi-0.5
Posteromedial cortical nucleusipsiPMCo-0.5
Ventral pallidumipsiVP1
Accumbens nucleusipsiAc-0.5
HippocampusipsiHIPP3
Anterior hippocampal formationipsiAHCf-0.5
Ammon hornipsiAmH3
Field CA1 of hippocampusipsiCA13
Field CA1 of hippocampus layer stratum pyramidaleipsiCA1pyr-0.5
Field CA1 of hippocampus ventral layer stratum pyramidal cellsipsiCA1vL3spc-0.5
Field CA2 of hippocampusipsiCA23
Field CA2 of hippocampus layer stratum secondary axon of commissural fibers of pyramidale pyramidal cellsipsiCA2L3scfpy-2
Field CA3 of hippocampusipsiCA33
Field CA3a of hippocampus pyramidal cell layer secondary axon from commissural fibers of pyramidal cellsipsiCA3aLcfpyc-2
SubiculumipsiS-0.5
Molecular layer of the subiculumipsiSumo-0.5
Subiculum ventral partipsiSv-0.5
Presubiculum layer 2ipsiPrSL22
Presubiculum layer 3ipsiPrSL32
Presubiculum layer 5ipsiPrSL52
ParasubiculumipsiPaS1
Parasubiculum superficial layer 2ipsiPaSsL22
Parasubiculum superficial layer 3ipsiPaSsL32
Entorhinal cortexipsiEnt1
Interpeduncular nucleusipsiIP-0.5
Lateral septal nucleusipsiLS1
Lateral septal nucleus caudal partipsiLSc-0.5
Lateral septal nucleus dorsal partipsiLSD-0.5
Lateral septal nucleus rostral partipsiLSr1
Lateral septal nucleus rostral part dorsolateral zoneipsiLSrdl-0.5
Ventrally lateral septal nucleus rostral part medial zoneipsiLSrmV2
Lateral septal nucleus ventral partipsiLSV1
Ventral tegmental area A10contraVTA2
Laterodorsal tegmental nucleuscontraLDTg3
Nucleus incertus pars dissipatacontraNId1
Tuberal nucleuscontraTU0.5
Ventromedial hypothalamic nucleus dorsomedial partcontraVMHDM1
Medial group of the dorsal thalamuscontraMED1.5
Mediodorsal thalamic nucleuscontraMD1.5
Medial habenular nucleuscontraMHb1.5
SubiculumcontraS0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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