University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Stria medullaris of the thalamus left


Abbreviation
sm
Color       
Superior regionsLarge fiber tracts

SynonymsAbbr.Language
Stria medullaris of the thalamussmEng

SubregionsSide
Dorsal stria medullaris of the thalamusleft
Stria medullaris of the thalamus caudal partleft
Ventral stria medullaris of the thalamusleft
Rostrocaudal part of the stria medullaris of the thalamusleft

Output to

NameSideAbbr.WeightDetails
Laterodorsal tegmental nucleusipsiLDTg1
Ventral tegmental nucleusipsiVTg1
Dorsal tegmental nucleusipsiDTg1.5
Locus coeruleusipsiLC2
Medial septal nucleusipsiMS3
Lateral habenular nucleus lateral partipsiLHbL3
Pineal glandipsiPi1
Medial forebrain bundleipsimfb-2
Retrosplenial regionsipsiRS0
Laterodorsal tegmental nucleuscontraLDTg0.5
Ventral tegmental nucleuscontraVTg0.5
Dorsal tegmental nucleuscontraDTg1
Locus coeruleuscontraLC1
Medial habenular nucleuscontraMHb-0.5

Input from

NameSideAbbr.WeightDetails
Parabigeminal nucleusipsiPBG0
Periaqueductal gray caudal partipsiPAGc-2
Central tegmental field superior partipsiTGACs3
Substantia nigra A9ipsiSN0
Ventral tegmental area A10ipsiVTA3
Peripeduncular nucleusipsiPP-2
Dorsal tegmental nucleusipsiDTg-2
Dorsal tegmental nucleus lateral partipsiDLTN1
Paramedian region of the midbrainipsiMECparam3
A7 noradrenaline cellsipsiA70
Locus coeruleusipsiLC-2
Pontine reticular nucleus oral partipsiPnO-2
Pontine reticular nucleus caudal partipsiPNC-2
Parabrachial nucleus dorsal partipsiPBD-2
Parabrachial nucleus ventral partipsiPBV-2
C1 adrenaline cellsipsiC10
C2 adrenaline cellsipsiC20
Dorsal raphe nucleusipsiDR1
Median raphe nucleusipsiMnR-2
Pontine raphe nucleusipsiPnR-2
Raphe magnus nucleusipsiRMg0
A1 noradrenergic cellsipsiA10
A2 noradrenergic cellsipsiA20
Basal forebrainipsiBAF-0.5
Magnocellular basal forebrain neuronal complexipsiMBFNC1.5
Diagonal band of BrocaipsiDBB3
Medial septal nucleusipsiMS2
Medial septal nucleus medial partipsiMSm-0.5
Basal nucleus MeynertipsiB2.5
Basal nucleus Meynert caudal partipsiBca2.5
Substantia innominataipsiSI-2
Substantia innominata pars subcommissuralisipsiSIsc3
Medial basal forebrainipsiMBAF3
Intermediate hypothalamic cell groupsipsiIHCG1.5
Lateral preoptic areaipsiLPO-0.5
Medial preoptic areaipsiMPA-2
Magnocellular preoptic nucleusipsiMCPO0
Dorsomedial hypothalamic nucleusipsiDMHy1
Lateral hypothalamic area [Preoptic anterior region]ipsiLHPAR3
Lateral zoneipsiLHA1
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area perifornical partipsiPFx2
Tuberal division of the lateral hypothalamic areaipsiLHTC-2
Anterior hypothalamic areaipsiAHA1
Anterior hypothalamic area posterior partipsiAHAP-2
Anterior hypothalamic nucleusipsiAHn-2
Dorsal hypothalamic areaipsiDA1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Ventromedial hypothalamic nucleusipsiVMH1
Ventromedial hypothalamic nucleus anterior partipsiVMHA-2
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL1.5
Arcuate nucleusipsiArc0.5
Arcuate nucleus parts part 2ipsiArcPaP2-2
Arcuate nucleus parts part 3ipsiArcPaP3-2
Arcuate nucleus parts part 4ipsiArcPaP4-2
Arcuate nucleus parts part 5ipsiArcPaP50
Paraventricular hypothalamic nucleusipsiPa1
Preoptic periventricular nucleusipsiPePO0
Suprachiasmatic nucleusipsiSCh0
Supraoptic nucleus [Supraoptic region]ipsiSO-2
Lateral mammillary nucleusipsiLM0
Premammillary nucleusipsiPMAN-2
Supramammillar nucleusipsiSuM-2
A11 dopamine cellsipsiA110
A8 dopamine cells retrorubral groupipsiRRF0
Perifornical nucleusipsiPeF1
Perifornical nucleus medial partipsiPeFM-2
Anteroventral thalamic nucleus ventrolateral partipsiAVVL-2
Subfornical organipsiSFO-2
Zona incertaipsiZI0
HabenulaipsiHAB3
Lateral corticohabenular tractipsiLcht3
Supranuclear divisionsipsiSUD0.5
Basolateral amygdaloid nucleusipsiBL-2
Basomedial amygdaloid nucleusipsiBM0
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis medial divisionipsiBSTM-2
Bed nucleus of the stria terminalis posterior divisionipsiBSTP-0.5
Anterior amygdaloid areaipsiAA1
Anterior cortical amygdaloid nucleusipsiACo-2
Posterior amygdaloid nucleusipsiCOAp0
Nucleus of the lateral olfactory tractipsiLOT0
Medial amygdaloid nucleusipsiMe-2
Posteromedial cortical nucleusipsiPMCo-2
Medial globus pallidusipsiMGP3
Medial globus pallidus rostral partipsiMGPr-0.5
Ventral pallidumipsiVP3
Subiculum dorsal partipsiSd-2
Subiculum ventral partipsiSv-2
Ventral hippocampal commissureipsivhc-2
Anterior piriform cortex layer 6ipsiAPIRCPIRlL62.5
Piriform cortex deep layersipsiPirLd1
Interpeduncular nucleusipsiIP-2
Olfactory tubercleipsiTuO2.5
Olfactory tubercle anterior partipsiTuOA2.5
Olfactory tubercle deep layersipsiTuODL1
Olfactory tubercle deep polymorph layeripsiTuOdpo1
Olfactory tubercle polymorph layer rostral partipsiTuOpoR-0.5
Olfactory tubercle rostral partipsiTuOr-0.5
Lateral septal nucleusipsiLS0
Lateral septal nucleus caudal part dorsal zoneipsiLScd-2
Lateral septal nucleus most caudal aspectipsiLSmca-2
Lateral septal nucleus dorsal partipsiLSD-2
Lateral septal nucleus rostral part dorsolateral zoneipsiLSrdl1
Lateral septal nucleus ventral partipsiLSV1
Lateral septal nucleus basal partsipsiLSbas3
Posterior septal complexipsiPSC1
Septofimbrial nucleusipsiSFi3
Triangular septal nucleusipsiTS1
Triangular septal nucleus middle partipsiTSmi-2
Triangular septal nucleus dorsal halfipsiTSdh-2
Caudal septumipsiCSER-2
Parabigeminal nucleuscontraPBG0
Periaqueductal gray caudal partcontraPAGc-2
Substantia nigra A9contraSN0
Ventral tegmental area A10contraVTA-2
Peripeduncular nucleuscontraPP0
Dorsal tegmental nucleuscontraDTg0
Dorsal tegmental nucleus lateral partcontraDLTN0
A7 noradrenaline cellscontraA70
Locus coeruleuscontraLC0
Pontine reticular nucleus oral partcontraPnO-2
Pontine reticular nucleus caudal partcontraPNC-2
Parabrachial nucleus dorsal partcontraPBD0
Parabrachial nucleus ventral partcontraPBV0
C1 adrenaline cellscontraC10
C2 adrenaline cellscontraC20
A1 noradrenergic cellscontraA10
A2 noradrenergic cellscontraA20
Basal nucleus MeynertcontraB2.5
Basal nucleus Meynert caudal partcontraBca2.5
Intermediate hypothalamic cell groupscontraIHCG-0.5
Medial preoptic areacontraMPA0
Magnocellular preoptic nucleuscontraMCPO0
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Lateral zonecontraLHA-0.5
Lateral hypothalamic areacontraLH-2
Anterior hypothalamic areacontraAHA-0.5
Dorsal hypothalamic areacontraDA-0.5
Ventromedial hypothalamic nucleuscontraVMH-0.5
Ventromedial hypothalamic nucleus anterior partcontraVMHA0
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL-0.5
Arcuate nucleus parts part 2contraArcPaP2-2
Arcuate nucleus parts part 3contraArcPaP3-2
Arcuate nucleus parts part 4contraArcPaP40
Arcuate nucleus parts part 5contraArcPaP50
Paraventricular hypothalamic nucleuscontraPa-0.5
Preoptic periventricular nucleuscontraPePO0
Suprachiasmatic nucleuscontraSCh0
Supraoptic nucleus [Supraoptic region]contraSO0
Lateral mammillary nucleuscontraLM0
Premammillary nucleuscontraPMAN0
Supramammillar nucleuscontraSuM-2
A11 dopamine cellscontraA110
A8 dopamine cells retrorubral groupcontraRRF0
Perifornical nucleuscontraPeF-0.5
Basomedial amygdaloid nucleuscontraBM0
Bed nucleus of the stria terminaliscontraBST0
Anterior cortical amygdaloid nucleuscontraACo0
Medial amygdaloid nucleuscontraMe0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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