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Rat connectome



Amygdalohippocampal area left


Abbreviation
AHi
Color       
Superior regionsVomeronasal cortical like amygdala

SynonymsAbbr.Language
Amygdalohippocampal portion of the amygdala  
Amygdalohippocampal transition zone Eng
Amygdalohippocampal transition area Eng
Amygdalohippocampal areaAHiEng
Amygdalohippocampal areaAHAEng
Posteromedial amygdaloid nucleus Eng
Amygdalohippocampal zoneAHZEng
Amygdalohippocampal transition areaAHipEng

SubregionsSide
Amygdalohippocampal area anterolateral partleft
Amygdalohippocampal area lateral partleft
Amygdalohippocampal area medial partleft
Amygdalohippocampal area posterolateral partleft
Amygdalohippocampal area posteromedial partleft
Amygdalohippocampal area rostrolateral partleft
Amygdalohippocampal area ventral partleft
White matter dorsal to amygdalohippocampal arealeft
Amygdalohippocampal area posterior nucleusleft

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG2
Caudal endopiriform regionipsiCEn-0.5
Central endopiriform systemipsiCEnN-0.5
Dorsal endopiriform nucleusipsiDEn-0.5
Rostral endopiriform regionipsiREn-0.5
Islands of CallejaipsiICj-0.5
Substantia innominataipsiSI-0.5
Preoptic regionipsiPREO3
Medial preoptic areaipsiMPA2
Preoptic nucleusipsiPREn-1
Magnocellular preoptic nucleusipsiMCPO-0.5
Medial preoptic nucleusipsiMPO4
Dorsal tenia tectaipsiDTT-0.5
Tuberomammillary nucleusipsiTuM2
Dorsomedial hypothalamic nucleusipsiDMHy1
Lateral hypothalamic nucleusipsiLHN-0.5
Tuberal region of lateral hypothalamusipsiTuLH0.5
Tuberal nucleusipsiTU-0.5
Mediobasal hypothalamusipsiMeHypo2.5
Medial division of the hypothalamusipsiMdH4
Anterior hypothalamic areaipsiAHA1
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe-0.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Medial mammillary nucleus surrounding areaipsiMMSur-0.5
Posterior hypothalamic areaipsiPHA2
Posterior hypothalamic nucleusipsiPH-0.5
Anteroventral periventricular nucleus [Tuberal region]ipsiAVPeTR-0.5
Tuberal area ventral to the fornixipsiTAvf0
Ventromedial hypothalamic nucleusipsiVMH4
Ventromedial hypothalamic nucleus anterior dorsal subdivisionipsiVMHad-0.5
Ventromedial hypothalamic nucleus anterior ventral partipsiVMHav3
Ventromedial hypothalamic nucleus central partipsiVMHC3
Ventromedial hypothalamic nucleus lateral partipsiVMHL-0.5
Ventromedial hypothalamic nucleus medial partipsiVMHM0
Ventromedial hypothalamic nucleus posterior partipsiVMHP3
Ventromedial hypothalamic nucleus rostral partipsiVMHR0
Ventromedial hypothalamic nucleus shellipsiVMS3
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL4
Ventromedial hypothalamic nucleus surrounding areaipsiVMHSur-0.5
Mediobasal hypothalamus anterior partipsiMeHypoAnt3
Mediobasal hypothalamus posterior partipsiMeHypoP4
Arcuate nucleusipsiArc3
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR2
Paraventricular hypothalamic nucleus medial parvocellular partipsiMPPa-0.5
Paraventricular hypothalamic nucleus ventral part [Periventricular zone anterior region]ipsiPaV-0.5
Paraventricular hypothalamic nucleusipsiPa1
Paraventricular nucleus medial partipsiPame-0.5
Periventricular hypothalamic nucleusipsiPe1
Suprachiasmatic nucleusipsiSCh3
Supraoptic nucleus dorsal partipsiSOd-0.5
Supraoptic nucleus ventral part [Supraoptic region]ipsiSOV3
Premammillary nucleusipsiPMAN3
Premammillary nucleus dorsal partipsiPMD1
Premammillary nucleus ventral partipsiPMV3
Retrochiasmatic areaipsiRCh1
Parafascicular thalamic nucleusipsiPF2
Rhomboid thalamic nucleusipsiRh2
Mediodorsal thalamic nucleusipsiMD2
Mediodorsal thalamic nucleus central partipsiMDC1
Mediodorsal thalamic nucleus medial partipsiMDM2
Paratenial thalamic nucleusipsiPT2
Paraventricular thalamic nucleusipsiPV2
Paraventricular thalamic nucleus posterior partipsiPVP2
Reuniens thalamic nucleusipsiRe2
Ventral posteromedial thalamic nucleusipsiVPM-0.5
Medial lip of the rostral reticular thalamic nucleusipsiRtrmL2
Subparafascicular thalamic nucleusipsiSPF2
Basal nucleusipsiBnc1
Accessory basal nucleusipsiAB1
Accessory basal nucleus magnocellular divisionipsiABm-3
Accessory basal nucleus parvicellular divisionipsiABp-3
Basal nucleus intermediate divisionipsiBnci-3
Basal nucleus magnocellular partipsiBmc-3
Basal nucleus parvicellular partipsiBpc-3
Lateral amygdaloid nucleusipsiLA1
Dorsolateral part of the lateral nucleusipsiLaDL-3
Lateral nucleus medial partipsiLAM-3
Ventrolateral part of the lateral nucleusipsiLaVL-3
Bed nucleus of the stria terminalisipsiBST3
Bed nucleus of the stria terminalis anterior dorsal areaipsiBSTAD3
Bed nucleus of the stria terminalis anterior lateral areaipsiBSTAL3
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv0
Bed nucleus of the stria terminalis caudodorsalipsiBSTCd-0.5
Bed nucleus of the stria terminalis lateral divisionipsiBSTL3
Bed nucleus of the stria terminalis lateral division posterior partipsiBSTLP-0.5
Bed nucleus of the stria terminalis medial divisionipsiBSTM3
Bed nucleus of the stria terminalis medial division anterior partipsiBSTMA-0.5
Bed nucleus of the stria terminalis medial division posteromedial partipsiBSTMPM-0.5
Bed nucleus of the stria terminalis medial division ventral partipsiBSTMV-0.5
Bed nucleus of the stria terminalis dorsal nucleusipsiBSTd-0.5
Bed nucleus of the stria terminalis supracommissural partipsiBSTsco-0.5
Central amygdaloid nucleusipsiCe3
Central amygdaloid nucleus intermediate divisionipsiCeI-3
Central amygdaloid nucleus lateral divisionipsiCeL-3
Central amygdaloid nucleus lateral division capsular partipsiCeC-3
Central amygdaloid nucleus medial divisionipsiCeM-0.5
Sublenticular extended amygdalaipsiSLEA-0.5
Junction of the bed nucleus of the stria terminalis with the dorsal part of the anterior hypothalamusipsiJBSTDAH1
Amygdalopiriform transition areaipsiAPir1
Anterior amygdaloid areaipsiAA1
Anterior cortical amygdaloid nucleusipsiACo1
Posterior amygdaloid nucleusipsiCOAp1
Posterolateral cortical nucleusipsiPLCo-0.5
Nucleus of the lateral olfactory tractipsiLOT1
Periamygdaloid complexipsiPAC1
Medial extreme of the caudal periamygdaloid cortexipsiMePACC-0.5
Periamygdaloid complex medial divisionipsiPACm1
Periamygdaloid complex sulcal divisionipsiPACs1
Medial extended amygdalaipsiMEXA-1
Medial amygdaloid nucleusipsiMe2.5
Medial amygdaloid nucleus caudal partipsiMeC-3
Medial amygdaloid nucleus central dorsal partipsiMeCD-3
Medial amygdaloid nucleus central ventral partipsiMeCV-3
Medial amygdaloid nucleus dorsal tipipsiMeDT-0.5
Medial amygdaloid nucleus rostral partipsiMeRo-3
Amygdalohippocampal areaipsiAHi2
Amygdalohippocampal area lateral partipsiAHilp-3
Amygdalohippocampal area medial partipsiAHimp-3
Bed nucleus of the accessory olfactory tractipsiBAOT1
Posteromedial cortical nucleusipsiPMCo1
Intercalated nuclei of the amygdalaipsiI1
Medial globus pallidusipsiMGP2
Ventral pallidumipsiVP-0.5
Accumbens nucleusipsiAc2
Accumbens nucleus anterolateral partipsiAcAL1
Accumbens nucleus coreipsiAcbC3
Accumbens nucleus shellipsiAcbSh3
Cone like caudal dorsomedial extremity of the accumbens shellipsiAcbShco1
Medial accumbens shellipsiAcbShm-0.5
Anterior accumbensipsiAcbA2
Lateral nucleus accumbensipsiAcl3
Medial accumbensipsiAcbM3
Posteromedial accumbensipsiAcbPM1
Dorsomedial striatumipsiCPudm2
Dorsal striatumipsiCPud0
Mediodorsal striatumipsiCPuMD2
Rostral striatumipsiCPur-1
Ventral striatumipsiCPuv-0.5
Fundus of the striatum rostral partipsiFSr-0.5
Hippocampal regionsipsiHIPPR-0.5
Field CA1 of hippocampusipsiCA12
Field CA1 of hippocampus layer stratum lacunosumipsiCA1L6sla2.5
Field CA1 of hippocampus layer stratum moleculareipsiCA1L7sm2.5
Field CA1 of hippocampus layer stratum radiatumipsiCA1rad2.5
Field CA1 of hippocampus layer stratum pyramidaleipsiCA1pyr2.5
Portion of CA1 located adjacent to the ventral subiculumipsiCA1sv-0.5
Field CA3 of hippocampus layer stratum lacunosumipsiCA3L6sla2
Field CA3 of hippocampus layer stratum moleculareipsiCA3L7sm2
SubiculumipsiS2
Entorhinal cortexipsiEnt2
Lateral entorhinal cortex ventral partipsiVLEA2
Lateral entorhinal cortex ventromedial partipsiVMEAL1
Dorsal anterior cingulate cortexipsiDACC-0.5
Prelimbic cortexipsiPrL2
Infralimbic cortexipsiIL2
Infralimbic cortex deep layersipsiILDL-0.5
Infralimbic cortex rostral partipsiILR1.5
Agranular insular cortex dorsal partipsiAID-0.5
Agranular insular cortex posterior partipsiAIP2
Perirhinal cortexipsiA352
Prefrontal cortexipsiPFC-0.5
Lateral agranular prefrontal cortexipsiAGl2
Medial prefrontal cortexipsimPFC2
Medial orbital cortexipsiMO-1
Medial geniculate nucleus ventral partipsiMGV2
Accessory olfactory bulbipsiAOB-0.5
Granule cell layer of the accessory olfactory bulbipsiAOBgl-0.5
Olfactory tubercleipsiTuO3
Semilunar nucleusipsiSL-0.5
Lateral septal nucleusipsiLS2
Lateral septal nucleus ventral partipsiLSV1
Septofimbrial nucleusipsiSFi-0.5
Stria terminalisipsist-2
Premammillary nucleuscontraPMAN-0.5
Bed nucleus of the stria terminaliscontraBST0.5
Posteromedial cortical nucleuscontraPMCo-0.5
Anterior accumbenscontraAcbA1
Dorsomedial striatumcontraCPudm1
Piriform cortex layer 5contraPirL5-0.5
Piriform cortex layer 6contraPirL6-0.5
Piriform cortex layer 1contraPirL1-0.5
Piriform cortex layer 2contraPirL2-0.5
Piriform cortex layer 3contraPirL3-0.5
Piriform cortex layer 4contraPirL4-0.5
Stellate ganglionipsiAutoSteG2

Input from

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG2
Ventral tegmental area A10ipsiVTA2
Nucleus incertus pars compactaipsiNIc3
Nucleus incertus pars dissipataipsiNId2
Subcoeruleus nucleusipsiSubC2
Subcoeruleus nucleus dorsal partipsiSubCD2
Dorsal raphe nucleusipsiDR2
Caudal endopiriform regionipsiCEn-0.5
Central endopiriform systemipsiCEnN-0.5
Rostral endopiriform regionipsiREn-0.5
Substantia innominataipsiSI2
Substantia innominata ventral partipsiSIV-0.5
Preoptic regionipsiPREO2
Intermediate hypothalamic cell groupsipsiIHCG1.5
Lateral preoptic areaipsiLPO-0.5
Lateral preoptic lateral hypothalamic continuumipsiLPOLH-0.5
Medial preoptic areaipsiMPA1
Medial preoptic nucleusipsiMPO1
Dorsomedial hypothalamic nucleusipsiDMHy1
Lateral zoneipsiLHA0
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area perifornical partipsiPFx2
Anterior hypothalamic areaipsiAHA2
Dorsal hypothalamic areaipsiDA2
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Posterior hypothalamic areaipsiPHA2
Ventromedial hypothalamic nucleusipsiVMH2
Ventromedial hypothalamic nucleus central partipsiVMHC2
Ventromedial hypothalamic nucleus shellipsiVMS4
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL1
Arcuate nucleusipsiArc1
Nucleus paraventricularis [Periventricular zone anterior region]ipsiPaPAR2
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP-0.5
Ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsivPaAP-0.5
Adjacent to the ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAPav-0.5
Periventricular anterioripsiPeriVA-0.5
Paraventricular hypothalamic nucleusipsiPa1
Anterior part of periventricular parvocellular subdivision of paraventricular hypothalamic nucleusipsiPVPapvA-0.5
Periventricular hypothalamic nucleusipsiPe2
Periventricular tuberalipsiPeriVT-0.5
Premammillary nucleusipsiPMAN3
Premammillary nucleus dorsal partipsiPMD-0.5
Premammillary nucleus ventral partipsiPMV-0.5
Supramammillar nucleusipsiSuM2
Perifornical nucleusipsiPeF-0.5
Perifornical nucleus at the level of the paraventricular hypothalamic nucleus anterior parvicellular partipsiPeFLPaAP-0.5
Perifornical nucleus caudal to the paraventricular hypothalamic nucleus anterior parvicellular partipsiPeFCPaAP-0.5
Retrochiasmatic areaipsiRCh2
Mediodorsal thalamic nucleusipsiMD2
Paratenial thalamic nucleusipsiPT2
Paraventricular thalamic nucleusipsiPV-0.5
Paraventricular thalamic nucleus anterior partipsiPVA2
Paraventricular thalamic nucleus posterior partipsiPVP2
Subparafascicular thalamic nucleusipsiSPF2
Subparafascicular thalamic nucleus rostral partipsiSPFr0
Zona incertaipsiZI-0.5
HabenulaipsiHAB2
Basal nucleusipsiBnc2
Accessory basal nucleusipsiAB2
Accessory basal nucleus magnocellular divisionipsiABm-3
Accessory basal nucleus parvicellular divisionipsiABp-3
Basal nucleus intermediate divisionipsiBnci-3
Basal nucleus magnocellular partipsiBmc-3
Basal nucleus parvicellular partipsiBpc-3
Basomedial amygdaloid nucleusipsiBM1
Posterior basomedial nucleusipsiBMP-0.5
Lateral amygdaloid nucleusipsiLA2
Anterior part of the lateral nucleusipsiLAa-0.5
Dorsolateral part of the lateral nucleusipsiLaDL-3
Lateral nucleus medial partipsiLAM-3
Ventrolateral part of the lateral nucleusipsiLaVL0.5
Ventromedial part of the lateral nucleusipsiLaVM0.5
Bed nucleus of the stria terminalisipsiBST2
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA-0.5
Bed nucleus of the stria terminalis medial divisionipsiBSTM1
Central amygdaloid nucleusipsiCe2.5
Central amygdaloid nucleus intermediate divisionipsiCeI-3
Central amygdaloid nucleus lateral divisionipsiCeL-3
Central amygdaloid nucleus lateral division capsular partipsiCeC-3
Central amygdaloid nucleus medial divisionipsiCeM-0.5
Amygdalopiriform transition area lateral partipsiAPirLP0.5
Amygdalopiriform transition area medial part rostral aspectipsiAPirMr1.5
Anterior amygdaloid areaipsiAA1
Anterior cortical amygdaloid nucleusipsiACo1
Posterior amygdaloid nucleusipsiCOAp1
Posterolateral cortical nucleusipsiPLCo1
Nucleus of the lateral olfactory tractipsiLOT-3
Periamygdaloid complexipsiPAC-3
Periamygdaloid complex medial divisionipsiPACm-3
Periamygdaloid complex sulcal divisionipsiPACs-3
Medial extended amygdalaipsiMEXA-0.5
Medial amygdaloid nucleusipsiMe2
Medial amygdaloid nucleus anterodorsal partipsiMeAD-0.5
Medial amygdaloid nucleus caudal partipsiMeC1
Medial amygdaloid nucleus central dorsal partipsiMeCD-3
Medial amygdaloid nucleus central ventral partipsiMeCV-3
Medial amygdaloid nucleus posteroventral partipsiMePV-0.5
Medial amygdaloid nucleus rostral partipsiMeRo-3
Amygdalohippocampal areaipsiAHi2
Amygdalohippocampal area anterolateral partipsiAHiAL-1
Amygdalohippocampal area lateral partipsiAHilp-3
Amygdalohippocampal area medial partipsiAHimp-3
Bed nucleus of the accessory olfactory tractipsiBAOT2
Posteromedial cortical nucleusipsiPMCo1
Intercalated nuclei of the amygdalaipsiI-3
Dentate gyrusipsiDG-1
Field CA1 of hippocampusipsiCA13
Field CA1 of hippocampus central partipsiCA1c2
Field CA1 of hippocampus medial partipsiCA1m0
Field CA1 of hippocampus temporal partipsiCA1t1
Field CA1 of hippocampus ventral layer stratum pyramidal cellsipsiCA1vL3spc-0.5
Field CA3 of hippocampusipsiCA3-1
SubiculumipsiS2
Intermediate subiculumipsiInSu1
Intermediate subiculum dorsal partipsiSidp0
Intermediate subiculum middle partipsiSimp1
Intermediate subiculum ventral partipsiSivp1
Subiculum dorsal partipsiSd0.5
Subiculum lateral ventral partipsiSvl3
Subiculum ventral part caudal subdivisionipsiSvc2
Subiculum ventral part medial partipsiSvm2
Subiculum ventral part rostral subdivisionipsiSvr2
Entorhinal cortexipsiEnt2
Dorsolateral entorhinal cortexipsiDLEnt1
Lateral entorhinal cortexipsiLEnt-0.5
Lateral entorhinal cortex ventromedial partipsiVMEAL1
Medial entorhinal cortexipsiMEnt-0.5
Ventrolateral entorhinal cortexipsiVLENT1
Ventrolateral entorhinal cortex layersipsiVLENTL1
Piriform cortexipsiPir2
Piriform cortex layer 2ipsiPirL21
Piriform cortex layer 3ipsiPirL31
Infralimbic cortexipsiIL2
Mitral cell layer of the olfactory bulbipsiMi2.5
Lateral septal nucleusipsiLS2
Intermediate hypothalamic cell groupscontraIHCG-0.5
Dorsomedial hypothalamic nucleuscontraDMHy-0.5
Anterior hypothalamic areacontraAHA-0.5
Dorsal hypothalamic areacontraDA-0.5
Ventromedial hypothalamic nucleuscontraVMH-0.5
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL-0.5
Arcuate nucleuscontraArc-0.5
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAP-0.5
Ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contravPaAP-0.5
Adjacent to the ventral part of the paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAPav-0.5
Paraventricular hypothalamic nucleuscontraPa-0.5
Anterior part of periventricular parvocellular subdivision of paraventricular hypothalamic nucleuscontraPVPapvA-0.5
Premammillary nucleus dorsal partcontraPMD-0.5
Premammillary nucleus ventral partcontraPMV-0.5
Perifornical nucleuscontraPeF-0.5
Perifornical nucleus at the level of the paraventricular hypothalamic nucleus anterior parvicellular partcontraPeFLPaAP-0.5
Perifornical nucleus caudal to the paraventricular hypothalamic nucleus anterior parvicellular partcontraPeFCPaAP-0.5
Central amygdaloid nucleuscontraCe0
Posterior amygdaloid nucleuscontraCOAp-0.5
Posteromedial cortical nucleuscontraPMCo-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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