University of Rostock

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Rat connectome



Medial longitudinal fasciculus left


Abbreviation
mlf
Color       
Superior regionsLemniscal nuclei

SynonymsAbbr.Language
Medial longitudinal fasciculusmlfEng
Medial longitudinal fasciclesmlofEng

SubregionsSide
Ventral half of the medial longitudinal fasciculusleft
Neurons in the medial longitudinal fasciculeleft
Lateral border medial longitudinal fasciculusleft

Output to

NameSideAbbr.WeightDetails
Medial longitudinal fasciculusipsimlf-0.5
Lateral periaqueductal grayipsiLPAG1
Medial pontine nucleusipsiMPoN-2
FlocculusipsiFl3
Locus coeruleusipsiLC1
Prelocus coeruleus nucleusipsiPLC1
Pontine reticular nucleusipsiPRN-0.5
Lateral parabrachial nucleusipsiLPB1
Parvicellular reticular nucleusipsiPCRt-2
MyelencephalonipsiMYC-2
Facial nucleus lateral subnucleusipsi7L-0.5
Facial nucleus medial partipsi7M-0.5
Nucleus of the solitary tractipsiSol-0.5
Nucleus of the solitary tract commissural partipsiSolC1.5
Rostral ventrolateral medullaipsiRVLM-2
Caudal ventral medulla oblongataipsiCVMeO-0.5
Nucleus of the horizontal limb of the diagonal bandipsiHDB-0.5
Nucleus of the vertical limb of the diagonal bandipsiVDB1
Medial septal nucleusipsiMS2
Medial preoptic nucleusipsiMPO0
Lateral hypothalamic areaipsiLH3
Posterior hypothalamic nucleusipsiPH3
Lateral mammillary nucleusipsiLM3
Perifornical nucleusipsiPeF2
Anteroventral thalamic nucleusipsiAV3
Mediodorsal thalamic nucleusipsiMD3
Lateral habenular nucleusipsiLHb3
Medial forebrain bundleipsimfb-2
Cisterna cerebellomedullarisipsiCistcm-3
Amygdaloid complexipsiAC0.5
Caudate putamenipsiCPu0.5
Lateral entorhinal cortexipsiLEnt-0.5
Medial entorhinal cortexipsiMEnt-2
Infralimbic cortexipsiIL1
Frontoparietal cortex at the border between lateral agranular prefrontal cortex and primary somatosensory cortexipsiFPCbAGl-2
Interpeduncular nucleusipsiIP3
Septal regionipsiSER-2
Mid-lateral septumipsimiLS2
Intermediolateral cell column T1ipsiIMLT1-2
Intermediolateral cell column T2ipsiIMLT2-2
Intermediolateral cell column T3ipsiIMLT3-2
Intermediolateral cell column T4ipsiIMLT4-2
Lumbar segmentsipsiLSeg-2
Spinal cord layers L1ipsiSCLL1-0.5
Spinal cord layers L2ipsiSCLL2-0.5
FlocculuscontraFl3
Locus coeruleuscontraLC1
Parvicellular reticular nucleuscontraPCRt-2
Nucleus of the solitary tractcontraSol-2
Nucleus of the solitary tract commissural partcontraSolC1.5
Rostral subambigual region of the rostral ventrolateral medullacontraRsARVLM-2
Perifornical nucleuscontraPeF1
Medial forebrain bundlecontramfb-2
Cisterna cerebellomedullariscontraCistcm-3
Infralimbic cortexcontraIL1
Frontoparietal cortex at the border between lateral agranular prefrontal cortex and primary somatosensory cortexcontraFPCbAGl-2
Myotendinous junction of the medial rectus muscleipsiMuscEEyeMRmj1
Orbicularis oculi muscleipsiMuscOrbOc1

Input from

NameSideAbbr.WeightDetails
Medial longitudinal fasciculusipsimlf-0.5
Ventrolateral periaqueductal grayipsiVLPAG-0.5
Ventromedial periaqueductal grayipsiVMPAG-2
Subpeduncular tegmental nucleusipsiSPTg-0.5
Retrorubral nucleusipsiRR-0.5
Laterodorsal tegmental nucleusipsiLDTg-0.5
Dorsal tegmental nucleus central partipsiDTgC-0.5
Pedunculopontine tegmental nucleusipsiPPTg-0.5
Edinger Westphal nucleusipsiEW-2
Interstitial nucleus of CajalipsiInC-2
Medial cerebellar nucleusipsiMed-0.5
Reticulotegmental nucleusipsiRETn-0.5
Prepositus nucleusipsiPr3
Deep mesencephalic nucleusipsiDpMe-0.5
Pontine reticular nucleus oral partipsiPnO-0.5
Middle rostrocaudal extent of the pontine reticular nucleus oral partipsiPnOmrce-2
Pontine reticular nucleus caudal partipsiPNC-0.5
Gigantocellular reticular nucleusipsiGi-0.5
Medullary reticular nucleusipsiMdD-0.5
Ventral part of the nucleus medullae oblongatae centralisipsiVMdDc-2
Parvicellular reticular nucleusipsiPCRt-2
MyelencephalonipsiMYC-2
Spinal vestibular nucleusipsiSpVe1
Vestibular nucleiipsiVnc-0.5
Superior vestibular nucleusipsiSuVe-0.5
Medial vestibular nucleusipsiMVe3
Medial vestibular nucleus parvicellular partipsiMVePC1
Medial vestibular nucleus dorsomedial parvicellular partipsiMVePCdm-2
Lateral vestibular nucleusipsiLVe-0.5
Inferior vestibular nucleusipsiIVN3
Nucleus of the solitary tractipsiSol-2
Nucleus of the solitary tract rostral partipsiSolro-2
Ventral part of the rostral nucleus of the solitary tractipsiSolroV-2
Nucleus of the solitary tract rostrocentralipsiSolroc-2
Dorsal raphe nucleusipsiDR-2
Dorsal raphe nucleus lateral wingipsiDRlw-2
Raphe magnus nucleusipsiRMg-0.5
Raphe obscurus nucleusipsiROb-0.5
Inferior oliveipsiIO-0.5
Dorsal paragigantocellular nucleusipsiDPGi-2
Dorsomedial hypothalamic nucleusipsiDMHy0
Perifornical hypothalamic area [Preoptic anterior region]ipsiPFxPAR1
Lateral hypothalamic area dorsal partipsiLHd0.5
Lateral hypothalamic area ventral partipsiLHAvp1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM0.5
Periventricular zoneipsiPVZ0
Lateral mammillary nucleusipsiLM0
Supramammillar nucleusipsiSuM1
Medial part of the caudal perifornical areaipsiPeFCM2
Lateral part of the caudal perifornical areaipsiPeFCL2
Parafascicular thalamic nucleus prerubral partipsiPFPR-2
Zona incertaipsiZI-0.5
Pretectal regionipsiPRT-2
Cerebral peduncle basal partipsicp-2
Medial terminal nucleus of the accessory optic tractipsiMT-2
Prelimbic cortex layer 5ipsiPrLL5-2
Prelimbic cortex layer 6ipsiPrLL6-2
Infralimbic cortexipsiIL1
Infralimbic cortex layer 5ipsiILL5-2
Infralimbic cortex layer 6ipsiILL6-2
Olfacto septal areaipsiOSA1
Lateral septal nucleusipsiLS1
Lumbar segmentsipsiLSeg-2
Ventrolateral periaqueductal graycontraVLPAG-0.5
Subpeduncular tegmental nucleuscontraSPTg-0.5
Edinger Westphal nucleuscontraEW-2
Interstitial cell groupscontraCERIc-2
Prepositus nucleuscontraPr3
Intermediate reticular nucleuscontraIRt-0.5
Deep mesencephalic nucleuscontraDpMe-0.5
Pontine reticular nucleus oral partcontraPnO-0.5
Pontine reticular nucleus caudal partcontraPNC-0.5
Gigantocellular reticular nucleuscontraGi-0.5
Ventral part of the nucleus medullae oblongatae centraliscontraVMdDc-2
Spinal vestibular nucleuscontraSpVe2
Vestibular nucleicontraVnc-2
Medial vestibular nucleuscontraMVe-2
Medial vestibular nucleus parvicellular partcontraMVePC1
Nucleus of the solitary tractcontraSol1
Dorsal raphe nucleuscontraDR-2
Inferior olivecontraIO-0.5
Lateral paragigantocellular nucleuscontraLPGi-0.5
Dorsomedial hypothalamic nucleuscontraDMHy0
Perifornical hypothalamic area [Preoptic anterior region]contraPFxPAR-0.5
Lateral hypothalamic area dorsal partcontraLHd-0.5
Lateral hypothalamic area ventral partcontraLHAvp-0.5
Dorsomedial hypothalamic nucleus [Medial zone]contraDM-0.5
Periventricular zonecontraPVZ0
Medial part of the caudal perifornical areacontraPeFCM-0.5
Lateral part of the caudal perifornical areacontraPeFCL-0.5
Infralimbic cortexcontraIL1
Olfacto septal areacontraOSA1
Lateral septal nucleuscontraLS1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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