University of Rostock

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Rat connectome



Spinal cord layer 6 C3 left


Abbreviation
SCL6C3
Color       
Superior regionsDeep dorsal horn C3

SynonymsAbbr.Language
Spinal cord layer 6 C3SCL6C3Eng

SubregionsSide
Spinal cord layer 6 medial part C3left

Output to

NameSideAbbr.WeightDetails
Lateral periaqueductal grayipsiLPAG1
Ventrolateral periaqueductal grayipsiVLPAG1.5
Paraflocculus ventral partipsiPFlv-0.5
Posterior lobe of the cerebellumipsiCERCPL1
Ansiform lobule crus 1ipsiCrus1-0.5
Simple lobuleipsiSim-0.5
Anterior lobeipsiAnL2
Paravermal region of anterior lobeipsiPVAnL-0.5
FlocculusipsiFl-0.5
Magnocellular reticular nucleusipsiNRMC1
Deep mesencephalic nucleusipsiDpMe-0.5
Deep mesencephalic nucleus intermediateipsiDpMei2
Deep mesencephalic nucleus lateral partipsiDpMeL2
Deep mesencephalic nucleus medial partipsiDpMeM2
Pontine reticular nucleus oral partipsiPnO1
Cuneiforme nucleusipsiCnF1.5
Parabrachial nucleusipsiPB1.5
Lateral parabrachial nucleus lateral partipsiLPBL1
Parabrachial nucleus central lateral partipsiPBCeL1
Parabrachial nucleus dorsolateral partipsiPBDL1
Parabrachial nucleus superior lateralipsiPBSL1
Gigantocellular reticular nucleusipsiGi1
Lateral reticular nucleus lateral partipsiLRtL1
Lateral reticular nucleus magnocellular partipsiLRtMC1
Lateral reticular nucleus parvicellular partipsiLRtPC1
Subnucleus reticularis dorsalisipsiSRD3
Medullary reticular nucleus dorsal partipsiMdDd3
Ambiguus nucleusipsiAmb0.5
Spinal vestibular nucleusipsiSpVe-0.5
Medial vestibular nucleus caudal partipsiMVeP-0.5
Medial vestibular nucleus magnocellular partipsiMVeMC-0.5
Medial vestibular nucleus parvicellular partipsiMVePC-0.5
Lateral vestibular nucleusipsiLVe-0.5
Nucleus of the solitary tract lateral partipsiSolL3
Nucleus of the solitary tract medial partipsiSolM2
Raphe pallidus nucleusipsiRPa1
Dorsal column nucleiipsiDCN3
Cuneate nucleusipsiCu-0.5
Cuneate nucleus rostral partipsiCuRo-0.5
Gracile nucleus principal partipsiGr-0.5
External cuneate nucleusipsiECu-0.5
HypothalamusipsiHYPO1
Ventrobasal complexipsiVB1
Spinothalamic tractipsistt-2
Accumbens nucleusipsiAc1
Septal regionipsiSER1
Cervical segment 1ipsiCS13
Interneuron groups of layer 9 C1ipsiiGL9C1-0.5
Motoneuron groups of layer 9 C1ipsiMGL9C1-0.5
Cervical segment 2ipsiCS23
Interneuron groups of layer 9 C2ipsiiGL9C2-0.5
Motoneuron groups of layer 9 C2ipsiMGL9C2-0.5
Cervical segment 3ipsiCS33
Interneuron groups of layer 9 C3ipsiiGL9C3-0.5
Motoneuron groups of layer 9 C3ipsiMGL9C3-0.5
Cervical segment 4ipsiCS43
Interneuron groups of layer 9 C4ipsiiGL9C4-0.5
Motoneuron groups of layer 9 C4ipsiMGL9C4-0.5
Cervical segment 5ipsiCS53
Interneuron groups of layer 9 C5ipsiiGL9C5-0.5
Motoneuron groups of layer 9 C5ipsiMGL9C5-0.5
Cervical segment 6ipsiCS63
Cervical segment 7ipsiCS73
Spinal cord layer 9 C7ipsiSCL9C7-0.5
Cervical segment 8ipsiCS83
Thoracal segment 1ipsiT13
Thoracal segment 2ipsiT23
Spinal cord layers T2ipsiSCLT22
Thoracal segment 3ipsiT33
Thoracal segment 4ipsiT43
Thoracal segment 5ipsiT53
Thoracal segment 6ipsiT63
Thoracal segment 7ipsiT73
Thoracal segment 8ipsiT83
Thoracal segment 9ipsiT93
Thoracal segment 10ipsiT103
Thoracal segment 11ipsiT113
Thoracal segment 12ipsiT123
Thoracal segment 13ipsiT133
Lumbar segmentsipsiLSeg1.5
Lumbar segment 1ipsiL13
Spinal cord layer 9 L1ipsiSCL9L11
Lumbar segment 2ipsiL23
Spinal cord layer 9 L2ipsiSCL9L21
Lumbar segment 3ipsiL33
Spinal cord layer 9 L3ipsiSCL9L31
Lumbar segment 4ipsiL43
Lumbar segment 5ipsiL53
Lumbar segment 6ipsiL63
Sacral segment 1ipsiSa13
Sacral segment 2ipsiSa23
Sacral segment 3ipsiSa33
Sacral segment 4ipsiSa43
Coccygeal segment 1ipsiCo1-0.5
Coccygeal segment 2ipsiCo2-0.5
Nucleus of DarkschewitschcontraDk-0.5
Periaqueductal graycontraPAG-0.5
Lateral periaqueductal graycontraLPAG3
Ventrolateral periaqueductal graycontraVLPAG2
Red nucleuscontraR-0.5
Intercollicular nucleuscontraInCo-0.5
Edinger Westphal nucleuscontraEW-0.5
Paraflocculus ventral partcontraPFlv-0.5
Cerebellar lobule 3contraCERL3-0.5
Cerebellar lobule 4contraCERL4-0.5
Cerebellar lobule 5contraCERL5-0.5
Cerebellar lobule 7contraCERL7-0.5
Cerebellar lobule 6contraCERL6-0.5
Posterior lobe vermiscontraPLVERM-0.5
FlocculuscontraFl-0.5
Magnocellular reticular nucleuscontraNRMC3
Mesencephalic reticular formationcontraMRF-0.5
Deep mesencephalic nucleuscontraDpMe-0.5
Deep mesencephalic nucleus intermediatecontraDpMei2
Deep mesencephalic nucleus lateral partcontraDpMeL2
Deep mesencephalic nucleus medial partcontraDpMeM2
Pontine reticular nucleus oral partcontraPnO3
Cuneiforme nucleuscontraCnF2
Parabrachial nucleuscontraPB2
Lateral parabrachial nucleus lateral partcontraLPBL1
Parabrachial nucleus central lateral partcontraPBCeL1
Parabrachial nucleus dorsolateral partcontraPBDL1
Parabrachial nucleus superior lateralcontraPBSL1
Gigantocellular reticular nucleuscontraGi3
Lateral reticular nucleus lateral partcontraLRtL2
Medullary reticular nucleus dorsal partcontraMdDd0.5
Spinal vestibular nucleuscontraSpVe-0.5
Medial vestibular nucleus caudal partcontraMVeP-0.5
Medial vestibular nucleus magnocellular partcontraMVeMC-0.5
Medial vestibular nucleus parvicellular partcontraMVePC-0.5
Lateral vestibular nucleuscontraLVe-0.5
Nucleus of the solitary tract lateral partcontraSolL2
Nucleus of the solitary tract medial partcontraSolM2
Raphe pallidus nucleuscontraRPa1
Caudal ventrolateral medullacontraCVLM1
Dorsal column nucleicontraDCN0.5
Cuneate nucleuscontraCu-0.5
HypothalamuscontraHYPO3
Centrolateral thalamic nucleuscontraCL-0.5
Lateral group of the dorsal thalamuscontraLAT1.5
Posterior thalamic nuclear groupcontraPo2
Posterior thalamic nuclear group triangular partcontraPoT2
Mediodorsal thalamic nucleuscontraMD2
Submedius thalamic nucleuscontraSub1
Ventral posterolateral thalamic nucleuscontraVPL-0.5
Intralaminar nucleicontraILN-0.5
Anterior pretectal nucleuscontraAPT-0.5
Posterior pretectal nucleuscontraPPT-0.5
Spinothalamic tractcontrastt-2
Accumbens nucleuscontraAc2
Septal regioncontraSER2
Ventral funiculuscontravf-2
Ventrolateral funiculuscontravLF-2
Cervical segment 1contraCS11
Cervical segment 2contraCS21
Cervical segment 3contraCS31
Cervical segment 4contraCS41
Cervical segment 5contraCS51
Cervical segment 6contraCS61
Cervical segment 7contraCS71
Cervical segment 8contraCS81
Thoracal segment 1contraT11
Thoracal segment 2contraT21
Spinal cord layers T2contraSCLT21
Thoracal segment 3contraT31
Thoracal segment 4contraT41
Thoracal segment 5contraT51
Thoracal segment 6contraT61
Thoracal segment 7contraT71
Thoracal segment 8contraT81
Thoracal segment 9contraT91
Thoracal segment 10contraT101
Thoracal segment 11contraT111
Thoracal segment 12contraT121
Thoracal segment 13contraT131
Lumbar segmentscontraLSeg1.5
Lumbar segment 1contraL11
Spinal cord layer 9 L1contraSCL9L10.5
Lumbar segment 2contraL21
Spinal cord layer 9 L2contraSCL9L20.5
Lumbar segment 3contraL31
Spinal cord layer 9 L3contraSCL9L30.5
Lumbar segment 4contraL41
Lumbar segment 5contraL51
Lumbar segment 6contraL61
Sacral segment 1contraSa11
Sacral segment 2contraSa21
Sacral segment 3contraSa31
Sacral segment 4contraSa41
Coccygeal segment 1contraCo1-0.5
Coccygeal segment 2contraCo2-0.5
Median nervecontramen-0.5
Ulnar nervecontrauln-0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Red nucleusipsiR1
Red nucleus dorsalipsiRDO-0.5
Red nucleus magnocellular partipsiRMC3
Laterodorsal tegmental nucleusipsiLDTg-0.5
Pedunculopontine tegmental nucleusipsiPPTg3
Interstitial nucleus of CajalipsiInC-0.5
A5 noradrenaline cellsipsiA52
A7 noradrenaline cellsipsiA72
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca1
Magnocellular reticular nucleusipsiNRMC-0.5
Medial reticular formationipsiRFm-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Mesencephalic reticular formationipsiMRF-0.5
Deep mesencephalic nucleusipsiDpMe-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Gigantocellular reticular nucleus rostral partipsiGiRo-0.5
Subnucleus reticularis dorsalisipsiSRD3
Medullary reticular nucleus dorsal partipsiMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Boetzinger complexipsiBo0
Medial vestibular nucleus caudal partipsiMVeP1
Raphe magnus nucleusipsiRMg-0.5
Cuneate nucleusipsiCu3
Rostral part of the ventromedial medulla oblongataipsiRMeObvm1
Lateral hypothalamic areaipsiLH1
Zona incerta rostromedial partipsiZIrm0
Somatomotoric regionsipsiSMR-0.5
Lateral agranular prefrontal cortexipsiAGl1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS11
Secondary somatosensory cortexipsiS21
Dorsal root ganglion C1ipsiDRGC1-0.5
Dorsal root ganglion C2ipsiDRGC2-0.5
Dorsal root ganglion C3ipsiDRGC3-0.5
Dorsal root ganglion C7ipsiDRGC7-0.5
Thoracal segment 4ipsiT4-0.5
Thoracal segment 5ipsiT5-0.5
Thoracal segment 6ipsiT6-0.5
Thoracal segment 7ipsiT7-0.5
Thoracal segment 8ipsiT8-0.5
Thoracal segment 9ipsiT9-0.5
Thoracal segment 10ipsiT10-0.5
Thoracal segment 11ipsiT11-0.5
Thoracal segment 12ipsiT12-0.5
Thoracal segment 13ipsiT13-0.5
Lumbar segment 1ipsiL1-0.5
Lumbar segment 2ipsiL2-0.5
Lumbar segment 3ipsiL3-0.5
Lumbar segment 4ipsiL4-0.5
Lumbar segment 5ipsiL5-0.5
Lumbar segment 6ipsiL6-0.5
Sacral segment 1ipsiSa1-0.5
Sacral segment 2ipsiSa2-0.5
Sacral segment 3ipsiSa3-0.5
Sacral segment 4ipsiSa4-0.5
Coccygeal segment 1ipsiCo1-0.5
Red nucleuscontraR0.5
Red nucleus dorsalcontraRDO-0.5
Red nucleus dorsomedial partcontraRdm-0.5
Red nucleus magnocellular part caudal regioncontraRMCC-0.5
Red nucleus ventrolateral partcontraRveL-0.5
Superior colliculuscontraSC-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Superior colliculus deep layerscontraSCd-0.5
Pedunculopontine tegmental nucleuscontraPPTg3
A5 noradrenaline cellscontraA50.5
Locus coeruleuscontraLC0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Magnocellular reticular nucleuscontraNRMC-0.5
Medial reticular formationcontraRFm-0.5
Mesencephalic reticular formationcontraMRF-0.5
Pontine reticular nucleus oral partcontraPnO-0.5
Pontine reticular nucleus caudal partcontraPNC0.5
Gigantocellular reticular nucleuscontraGi0.5
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Medial vestibular nucleus caudal partcontraMVeP1
Cuneate nucleuscontraCu3
Frontal cortex area 2contraFr23
Parietal association cortexcontraPtA0.5
Insular cortexcontraICX0.5
Prefrontal cortexcontraPFC0.5
Lateral agranular prefrontal cortexcontraAGl3
Forelimb motor cortexcontraFMCx3
Primary somatosensory cortexcontraS13
Primary somatosensory cortex forelimb regioncontraS1FL2
Secondary somatosensory cortexcontraS23
Secondary visual cortexcontraV20.5
Thoracal segment 4contraT4-0.5
Thoracal segment 5contraT5-0.5
Thoracal segment 6contraT6-0.5
Thoracal segment 7contraT7-0.5
Thoracal segment 8contraT8-0.5
Thoracal segment 9contraT9-0.5
Thoracal segment 10contraT10-0.5
Thoracal segment 11contraT11-0.5
Thoracal segment 12contraT12-0.5
Thoracal segment 13contraT13-0.5
Lumbar segment 1contraL1-0.5
Lumbar segment 2contraL2-0.5
Lumbar segment 3contraL3-0.5
Lumbar segment 4contraL4-0.5
Lumbar segment 5contraL5-0.5
Lumbar segment 6contraL6-0.5
Sacral segment 1contraSa1-0.5
Sacral segment 2contraSa2-0.5
Sacral segment 3contraSa3-0.5
Sacral segment 4contraSa4-0.5
Coccygeal segment 1contraCo1-0.5
Sternomastoid nerveipsismn3
Sternocleidomastoideus muscleipsiMuscSTc-0.5
Trapezius muscleipsiMuscTrap-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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