University of Rostock

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Rat connectome



Spinal cord layer 6 L3 right


Abbreviation
SCL6L3
Color       
Superior regionsDeep dorsal horn L3

SynonymsAbbr.Language
Spinal cord layer 6 L3SCL6L3Eng

SubregionsSide
Spinal cord layer 6 lateral part L3right
Spinal cord layer 6 medial part L3right
Mediolateral extent of the spinal cord layer 6 L3right

Output to

NameSideAbbr.WeightDetails
Nucleus of DarkschewitschcontraDk-0.5
Periaqueductal graycontraPAG-0.5
Dorsal periaqueductal graycontraDPAG3
Lateral periaqueductal graycontraLPAG3
Ventrolateral periaqueductal graycontraVLPAG3
Medial pontine nucleuscontraMPoN2
Red nucleuscontraR-0.5
Intercollicular nucleuscontraInCo-0.5
Medial part of the peduncular pontine nucleuscontraPPNM2
Edinger Westphal nucleuscontraEW-0.5
Paramedian lobulecontraPM1
Anterior lobecontraAnL1
Cerebellar lobule 2contraCERL21
Cerebellar lobule 3contraCERL31
Cerebellar lobule 1contraCERL11
Cerebellar lobule 4contraCERL41
Cerebellar lobule 5contraCERL51
Caudal part of cerebellumcontraCERCca1
Cerebellar lobule 7contraCERL70
Cerebellar lobule 8contraCERL81
Cerebellar lobule 6contraCERL60
Posterior lobe vermiscontraPLVERM0
Central part of the peduncular part of the pontine nucleuscontraPePoC1
Medial ventral pontine regioncontraBPNvM2
Pontine nuclei dorsal partcontraDBPn1
Central part of the ventral part of the pontine nucleuscontraBPNvC1
Magnocellular reticular nucleuscontraNRMC-0.5
Cuneiforme nucleuscontraCnF2
Parabrachial nucleuscontraPB2
Lateral parabrachial nucleuscontraLPB0.5
Lateral parabrachial nucleus lateral partcontraLPBL1
Parabrachial nucleus central lateral partcontraPBCeL0
Parabrachial nucleus dorsolateral partcontraPBDL0
Parabrachial nucleus superior lateralcontraPBSL0
Gigantocellular reticular nucleuscontraGi-0.5
Lateral reticular nucleuscontraLRt-0.5
Lateral reticular nucleus lateral partcontraLRtL2
Medullary reticular nucleuscontraMdD-0.5
Medullary reticular nucleus dorsal partcontraMdDd0.5
Parvicellular reticular nucleuscontraPCRt-0.5
Spinal vestibular nucleuscontraSpVe-0.5
Nucleus of the solitary tract lateral partcontraSolL2
Nucleus of the solitary tract medial partcontraSolM2
Caudal ventrolateral medullacontraCVLM1
Dorsal column nucleicontraDCN0.5
Cuneate nucleuscontraCu-0.5
Nucleus ZcontraZ1
HypothalamuscontraHYPO3
Lateral hypothalamic areacontraLH2
Medial division of the hypothalamuscontraMdH2
Centrolateral thalamic nucleuscontraCL-0.5
Lateral group of the dorsal thalamuscontraLAT1.5
Posterior thalamic nuclear groupcontraPo2
Posterior thalamic nuclear group triangular partcontraPoT2
Mediodorsal thalamic nucleuscontraMD2
Submedius thalamic nucleuscontraSub-0.5
Ventral posteromedial thalamic nucleuscontraVPM-0.5
Ventrobasal complex anterior partcontraVBa-0.5
Intralaminar nuclei lateral partcontraILNL-0.5
Posterior intralaminar thalamic nucleuscontraPIL-0.5
Lateral posterior thalamic nucleuscontraLP-0.5
Posterior groupcontraPTG-0.5
Anterior pretectal nucleuscontraAPT-0.5
Posterior pretectal nucleuscontraPPT-0.5
Accumbens nucleuscontraAc3
Septal regioncontraSER2
Cervical segment 1contraCS11
Ventral horn C1contraVHC12
Cervical segment 2contraCS21
Ventral horn C2contraVHC22
Cervical segment 3contraCS31
Ventral horn C3contraVHC32
Cervical segment 4contraCS41
Cervical segment 5contraCS51
Cervical segment 6contraCS61
Cervical segment 7contraCS71
Cervical segment 8contraCS81
Thoracal segment 1contraT11
Thoracal segment 2contraT21
Thoracal segment 3contraT31
Thoracal segment 4contraT41
Thoracal segment 5contraT51
Thoracal segment 6contraT61
Thoracal segment 7contraT71
Thoracal segment 8contraT81
Thoracal segment 9contraT91
Thoracal segment 10contraT101
Thoracal segment 11contraT111
Thoracal segment 12contraT121
Thoracal segment 13contraT131
Lumbar segment 1contraL11
Lumbar segment 2contraL21
Lumbar segment 3contraL31
Lumbar segment 4contraL41
Lumbar segment 5contraL51
Lumbar segment 6contraL61
Sacral segment 1contraSa13
Sacral segment 2contraSa23
Sacral segment 3contraSa33
Sacral segment 4contraSa43
Coccygeal segment 1contraCo13
Coccygeal segment 2contraCo23
Dorsal periaqueductal grayipsiDPAG1
Lateral periaqueductal grayipsiLPAG1
Ventrolateral periaqueductal grayipsiVLPAG2
Posterior lobe of the cerebellumipsiCERCPL1
Paramedian lobuleipsiPM1
Lateral portion of the paramedian lobuleipsiLaPM1
Anterior lobeipsiAnL2
Cerebellar lobule 2ipsiCERL23
Cerebellar lobule 3ipsiCERL33
Cerebellar lobule 1ipsiCERL13
Cerebellar lobule 4ipsiCERL43
Cerebellar lobule 5ipsiCERL53
Caudal part of cerebellumipsiCERCca1
Cerebellar lobule 7ipsiCERL71
Cerebellar lobule 8ipsiCERL83
Cerebellar lobule 6ipsiCERL61
Posterior lobe vermisipsiPLVERM1
Pontine nucleiipsiPn-0.5
Pontine nuclei caudal partipsiBPNc-0.5
Magnocellular reticular nucleusipsiNRMC-0.5
Cuneiforme nucleusipsiCnF1.5
Parabrachial nucleusipsiPB1.5
Lateral parabrachial nucleus internal partipsiLPBI3
Lateral parabrachial nucleus lateral partipsiLPBL1
Parabrachial nucleus central lateral partipsiPBCeL0
Parabrachial nucleus dorsolateral partipsiPBDL0
Parabrachial nucleus superior lateralipsiPBSL0
Caudal bulbar reticular formationipsiCBRF-0.5
Gigantocellular reticular nucleusipsiGi-0.5
Lateral reticular nucleusipsiLRt1
Lateral reticular nucleus lateral partipsiLRtL1
Lateral reticular nucleus magnocellular partipsiLRtMC1
Lateral reticular nucleus parvicellular partipsiLRtPC1
Medullary reticular nucleusipsiMdD-0.5
Medullary reticular nucleus dorsal partipsiMdDd3
Parvicellular reticular nucleusipsiPCRt1
Ambiguus nucleusipsiAmb0.5
Spinal vestibular nucleusipsiSpVe-0.5
Nucleus of the solitary tractipsiSol1
Nucleus of the solitary tract lateral partipsiSolL3
Nucleus of the solitary tract medial partipsiSolM2
Rostral ventrolateral medullaipsiRVLM1
Dorsal column nucleiipsiDCN3
Cuneate nucleusipsiCu1
GracileipsiGra1
Gracile nucleus principal partipsiGr-0.5
Nucleus ZipsiZ3
HypothalamusipsiHYPO1
Lateral hypothalamic areaipsiLH1
Medial division of the hypothalamusipsiMdH2
Ventrobasal complexipsiVB1
Reticular thalamic nucleus lateral partipsiRtL1
Accumbens nucleusipsiAc1
Septal regionipsiSER1
Cervical segment 1ipsiCS13
Ventral horn C1ipsiVHC12
Cervical segment 2ipsiCS23
Ventral horn C2ipsiVHC22
Cervical segment 3ipsiCS33
Ventral horn C3ipsiVHC32
Cervical segment 4ipsiCS43
Cervical segment 5ipsiCS53
Cervical segment 6ipsiCS63
Cervical segment 7ipsiCS73
Spinal cord layer 9 C7ipsiSCL9C7-0.5
Cervical segment 8ipsiCS83
Thoracal segment 1ipsiT13
Thoracal segment 2ipsiT23
Thoracal segment 3ipsiT33
Thoracal segment 4ipsiT43
Thoracal segment 5ipsiT53
Thoracal segment 6ipsiT63
Thoracal segment 7ipsiT73
Thoracal segment 8ipsiT83
Thoracal segment 9ipsiT93
Intermediolateral cell column T9ipsiIMLT9-0.5
Area X T9ipsiSCL10T9-0.5
Spinal cord layer 7 T9ipsiSCL7T9-0.5
Thoracal segment 10ipsiT103
Thoracal segment 11ipsiT113
Thoracal segment 12ipsiT123
Thoracal segment 13ipsiT133
Lumbar segment 1ipsiL13
Interneuron groups of layer 9 L1ipsiiGL9L1-0.5
Motoneuron groups of layer 9 L1ipsiMGL9L1-0.5
Lumbar segment 2ipsiL23
Interneuron groups of layer 9 L2ipsiiGL9L2-0.5
Motoneuron groups of layer 9 L2ipsiMGL9L2-0.5
Lumbar segment 3ipsiL33
Interneuron groups of layer 9 L3ipsiiGL9L3-0.5
Motoneuron groups of layer 9 L3ipsiMGL9L3-0.5
Spinal cord layer 9 L3ipsiSCL9L33
Lumbar segment 4ipsiL43
Interneuron groups of layer 9 L4ipsiiGL9L4-0.5
Motoneuron groups of layer 9 L4ipsiMGL9L4-0.5
Lumbar segment 5ipsiL53
Interneuron groups of layer 9 L5ipsiiGL9L5-0.5
Motoneuron groups of layer 9 L5ipsiMGL9L5-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Lumbar segment 6ipsiL63
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Sacral segment 1ipsiSa13
Sacral segment 2ipsiSa23
Sacral segment 3ipsiSa33
Sacral segment 4ipsiSa43
Coccygeal segment 1ipsiCo13
Coccygeal segment 2ipsiCo23
Sciatic nerveipsisci3
CoripsiOrgsCor-0.5
StomachipsiOrgsStomS-1
Bulbospongiosus musclecontraMuscbsp1
Tibialis anterior muscleipsiMuscTA-0.5
Soleus muscleipsiMuscSo-0.5
Bulbospongiosus muscleipsiMuscbsp2

Input from

NameSideAbbr.WeightDetails
Red nucleuscontraR3
Red nucleus magnocellular part caudal regioncontraRMCC-0.5
Pedunculopontine tegmental nucleuscontraPPTg3
A5 noradrenaline cellscontraA50.5
A5 noradrenaline cells caudal partcontraA5C1
A5 noradrenaline cells rostral partcontraA5R1
Locus coeruleuscontraLC0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Medial reticular formationcontraRFm-0.5
Mesencephalic reticular formationcontraMRF-0.5
Pontine reticular nucleus oral partcontraPnO-0.5
Pontine reticular nucleus caudal partcontraPNC0.5
Gigantocellular reticular nucleuscontraGi0.5
Gigantocellular reticular nucleus alpha partcontraGiA3
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Gigantocellular reticular nucleus ventral partcontraGiV3
Lateral paragigantocellular nucleuscontraLPGi-0.5
Frontal cortex area 2contraFr23
Parietal association cortexcontraPtA0.5
Insular cortexcontraICX0.5
Prefrontal cortexcontraPFC0.5
Lateral agranular prefrontal cortexcontraAGl3
Medial agranular prefrontal cortexcontraAGm2
Primary somatosensory cortexcontraS13
Secondary somatosensory cortexcontraS23
Somatomotoric regions layer 5contraSMRL51
Secondary visual cortexcontraV20.5
Dorsal root ganglion L3contraDRGL32
Central grayipsiCG1
Red nucleusipsiR1
Pedunculopontine tegmental nucleusipsiPPTg3
A5 noradrenaline cellsipsiA52
A5 noradrenaline cells caudal partipsiA5C2
A5 noradrenaline cells rostral partipsiA5R2
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca1
Medial reticular formationipsiRFm-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Mesencephalic reticular formationipsiMRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Pontine reticular nucleus oral partipsiPnO-0.5
Pontine reticular nucleus caudal partipsiPNC1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Gigantocellular reticular nucleus rostral partipsiGiRo-0.5
Subnucleus reticularis dorsalisipsiSRD1
Medullary reticular nucleus dorsal partipsiMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Raphe magnus nucleusipsiRMg3
Caudal ventrolateral medullaipsiCVLM-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm2
Lateral hypothalamic areaipsiLH1
Zona incerta rostromedial partipsiZIrm0
Somatomotoric regionsipsiSMR-0.5
Lateral agranular prefrontal cortexipsiAGl1
Hindlimb motor cortex layer 5ipsiHMCxL5-0.5
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS11
Secondary somatosensory cortexipsiS21
Somatomotoric regions layer 5ipsiSMRL51
Area X T11ipsiSCL10T11-0.5
Spinal cord layer 5 T11ipsiSCL5T11-0.5
Spinal cord layer 6 T11ipsiSCL6T11-0.5
Spinal cord layer 3 T11ipsiSCL3T11-0.5
Spinal cord layer 4 T11ipsiSCL4T11-0.5
Spinal cord layer 1 T11ipsiSCL1T11-0.5
Spinal cord layer 2 T11ipsiSCL2T11-0.5
Spinal cord layer 7 T11ipsiSCL7T11-0.5
Spinal cord layer 8 T11ipsiSCL8T11-0.5
Area X T12ipsiSCL10T12-0.5
Spinal cord layer 5 T12ipsiSCL5T12-0.5
Spinal cord layer 6 T12ipsiSCL6T12-0.5
Spinal cord layer 3 T12ipsiSCL3T12-0.5
Spinal cord layer 4 T12ipsiSCL4T12-0.5
Spinal cord layer 1 T12ipsiSCL1T12-0.5
Spinal cord layer 2 T12ipsiSCL2T12-0.5
Spinal cord layer 7 T12ipsiSCL7T12-0.5
Spinal cord layer 8 T12ipsiSCL8T12-0.5
Area X T13ipsiSCL10T13-0.5
Spinal cord layer 5 T13ipsiSCL5T13-0.5
Spinal cord layer 6 T13ipsiSCL6T13-0.5
Spinal cord layer 3 T13ipsiSCL3T13-0.5
Spinal cord layer 4 T13ipsiSCL4T13-0.5
Spinal cord layer 1 T13ipsiSCL1T13-0.5
Spinal cord layer 2 T13ipsiSCL2T13-0.5
Spinal cord layer 7 T13ipsiSCL7T13-0.5
Spinal cord layer 8 T13ipsiSCL8T13-0.5
Dorsal root ganglion L1ipsiDRGL10
Dorsal root ganglion L2ipsiDRGL22
Spinal cord layer 3 L2ipsiSCL3L23
Spinal cord layer 4 L2ipsiSCL4L23
Spinal cord layer 1 L2ipsiSCL1L23
Spinal cord layer 2 L2ipsiSCL2L23
Dorsal root ganglion L3ipsiDRGL32
Spinal cord layer 3 L3ipsiSCL3L33
Spinal cord layer 4 L3ipsiSCL4L33
Spinal cord layer 1 L3ipsiSCL1L33
Spinal cord layer 2 L3ipsiSCL2L33
Dorsal root ganglion L4ipsiDRGL42
Spinal cord layer 3 L4ipsiSCL3L43
Spinal cord layer 4 L4ipsiSCL4L43
Spinal cord layer 1 L4ipsiSCL1L43
Spinal cord layer 2 L4ipsiSCL2L43
Dorsal root ganglion L5ipsiDRGL51
Dorsal root ganglion L6ipsiDRGL61
Femoral nerveipsifem3
Peronal nerveipsiperonal2
Sural nerveipsisural-0.5
Sciatic nerveipsisci-0.5
Hamstring nerveipsihamstri3
Superior gluteal nerveipsisgluteal1
Obturator nerveipsiobturat3
Quadriceps femoris muscleipsiMuscQuadF-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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