University of Rostock

Department of Anatomy

Neuroscience Group

  Homepage

 Staff

 neuroVIISAS

 Rat connectome

 Other connectomes

 Neuroimaging

 Neurodegeneration

 Neuroproteomics

 Students

 Links

 Publications

Rat connectome



Medial cerebellar nucleus right


Abbreviation
Med
Color       
Superior regionsDeep cerebellar nuclei

SynonymsAbbr.Language
Medial fastigial cerebellar nucleus  
 MCN 
Nucleus fastigii L
Fastigial nucleus Eng
Cerebellar medial nucleusMNEng
Nucleus fastigius Eng
Medial cerebellar nucleusMedEng
Medial nucleus  
Fastigial cerebellar nucleus  
Medial nucleus of the cerebellumMNEng
Cerebellar fastigial nucleusFNEng
Nucleus medialisNMEng

SubregionsSide
Medial cerebellar nucleus caudal partright
Medial cerebellar nucleus caudalmedial partright
Medial cerebellar nucleus centromedial partright
Medial cerebellar nucleus dorsal partright
Medial cerebellar nucleus dorsocaudal partright
Medial cerebellar nucleus dorsolateral partright
Medial cerebellar nucleus dorsolateral protuberanceright
Medial cerebellar nucleus dorsomedial partright
Medial cerebellar nucleus intermediate partright
Medial cerebellar nucleus lateral partright
Medial cerebellar nucleus mediolateral extentright
Medial cerebellar nucleus middle subdivisionright
Medial cerebellar nucleus rostral partright
Medial cerebellar nucleus rostromedial partright
Medial cerebellar nucleus ventral partright
Medial cerebellar nucleus ventrolateral partright
Medial cerebellar nucleus ventromedial partright
Medial part of the medial cerebellar nucleusright
Medial cerebellar nucleus caudoventral partright
Medial cerebellar nucleus central partright
Medial cerebellar nucleus rostrocaudal extentright
Dorsolateral protuberanceright
Retrolateral nucleus fastigiiright
Medial cerebellar nucleus medial partright
Medial cerebellar nucleus cell populationsright
Medial cerebellar nucleus rostrolateral partright
Medial cerebellar nucleus medial divisionright
Fastigial pressure arearight

Output to

NameSideAbbr.WeightDetails
Central graycontraCG1
Central gray pons partcontraCGP1
Nuclei of the lateral lemniscuscontraNLL0.5
Nucleus of DarkschewitschcontraDk2
Oculomotor systemcontraOCS3
Oculomotor nucleus caudal partcontra3C1
Medial accessory oculomotor nucleuscontraMA31
Periaqueductal graycontraPAG2
Ventral periaqueductal graycontraVPAG3
Red nucleuscontraR3
Pararubral nucleuscontraPaR1
Prerubral fieldcontraPR1
Red nucleus caudal partcontraRnCa-1
Red nucleus magnocellular partcontraRMC3
Red nucleus magnocellular part caudal regioncontraRMCC0.5
Red nucleus parvicellular partcontraROC3
Red nucleus ventral partcontraRV-1
TectumcontraTEC1
Superior colliculus caudal partcontracSC1
Superior colliculus superficial layerscontraSCs0
Superior colliculus intermediate layerscontraSCi0.5
Intermediate gray layer of the superior colliculuscontraInG3
Intermediate white layer of the superior colliculuscontraInWh3
Superior colliculus deep layerscontraSCd2
Deep gray layer of the superior colliculuscontraDpG3
Deep white layer of the superior colliculuscontraDpWh3
Central tegmental field dorsal partcontraTGACd0
Ventral peduncular pontine nucleuscontraVPPn-0.5
Ventral peduncular region of the ventral pontine nucleuscontraVpVBPNv1
Ventral tegmental area A10contraVTA0.5
Ventral tegmental area A10 dorsolateral part dorsal periventricular partcontraVTAdLdv3
Ventral tegmental relay zonecontraVTRZ0.5
Ventral tegmental decussationcontravtgx1
Laterodorsal tegmental nucleuscontraLDTg1
Dorsomedial pontine tegmentumcontraTGADM2
Ventral tegmental nucleuscontraVTg3
Dorsal tegmental nucleuscontraDTg0.5
Pedunculopontine tegmental nucleuscontraPPTg2
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC3
Cerebellar lobule 2a zone AcontraCERL2aA-0.5
Cerebellar lobule 2b zone AcontraCERL2bA-0.5
Cerebellar lobule 3a zone AcontraCERL3aA-0.5
Cerebellar lobule 3b zone AcontraCERL3bA-0.5
Cerebellar lobule 1 zone AcontraCERL1A-0.5
Cerebellar lobule 4 zone AcontraCERL4A-0.5
Cerebellar lobule 5 zone AcontraCERL5A-0.5
Cerebellar lobule 7a zone AcontraCERL7aA-0.5
Cerebellar lobule 7b zone AcontraCERL7bA-0.5
Cerebellar lobule 8 zone AcontraCERL8A-0.5
Cerebellar lobule 9contraCERL92
Cerebellar lobule 9a zone AcontraCERL9aA-0.5
Cerebellar lobule 9b zone AcontraCERL9bA-0.5
Cerebellar lobule 9c zone AcontraCERL9cA-0.5
Cerebellar lobule 10b zone AcontraCERL10bA-0.5
Cerebellar lobule 10a zone AcontraCERL10aA-0.5
Cerebellar lobule 6a zone AcontraCERL6aA-0.5
Cerebellar lobule 6b zone AcontraCERL6bA-0.5
Cerebellar lobule 6c zone AcontraCERL6cA-0.5
Cerebellar lobule 6d zone AcontraCERL6dA-0.5
Medial cerebellar nucleuscontraMed1
Medial cerebellar nucleus caudal partcontraMedc3
Ventral part of the medial cerebellar nucleus middle subdivisioncontraVMMCM3
Uncinate fasciculuscontraunc-2
Ascending limb of the uncinate fasciculuscontrauncaL-2
Superior cerebellar pedunclecontrasucep-2
A5 noradrenaline cellscontraA50.5
Decussatio of the superior cerebellar pedunclecontraxscp-2
Locus coeruleuscontraLC1
Pontine graycontraPG1
Dorsomedial region of the pontine graycontraDMPG-0.5
Medial pontine graycontraMePG-0.5
Reticulotegmental nucleus of the ponscontraRtTg1
Ventral part of the reticulotegmental nucleus of the ponscontraRtTgCV-0.5
Reticulotegmental nucleus of the pons medial partcontraRtTgm-0.5
Pontine nucleicontraPn1
Pontine nuclei caudal partcontraBPNc0.5
Dorsal peduncular pontine nucleicontraDpBPn-0.5
Pontine nuclei lateral partcontraBPNL2
Pontine nuclei rostral partcontraBPNr1
Major subdivision of the rostral four fifths of the pontine nucleicontraBPNrFF-0.5
Pontine nucleus medial partcontraBPNm3
Pontine nucleus ventral partcontraBPNv3
Dorsomedial region of the ventral pontine nucleuscontraDmBPNv1
Middle region of the ventral part of the pontine nucleuscontraMiBPNv1
Ventral region of the ventral part of the pontine nucleuscontraVBPNv1
Prepositus nucleuscontraPr1
Reticular systemcontraRF1
Paramedian reticular nucleuscontraPMn3
Mesencephalic reticular formationcontraMRF1
Deep mesencephalic nucleuscontraDpMe3
Pontine reticular nucleuscontraPRN3
Pontine reticular nucleus oral partcontraPnO2
Pontine reticular nucleus caudal partcontraPNC3
Parabrachial nucleuscontraPB1
Lateral parabrachial nucleuscontraLPB0.5
Gigantocellular reticular nucleuscontraGi2
Gigantocellular reticular nucleus lateral partcontraGirL1
Lateral reticular nucleuscontraLRt1
Lateral aspect of the rostral half of the lateral reticular nucleuscontraLRhLRtr-2
Lateral reticular nucleus ventral partcontraLRtV1
Dorsal aspect of the middle third of the lateral reticular nucleuscontraDMTLRt-0.5
Lateral aspect of the middle third of the lateral reticular nucleuscontraLMTLRt-0.5
Midportion of the lateral reticular nucleuscontraMpLRt1
Medullary reticular nucleuscontraMdD1
Medullary reticular nucleus dorsal partcontraMdDd3
Parvicellular reticular nucleuscontraPCRt3
Parvicellular reticular nucleus lateral partcontraPCRtl1
Principal sensory trigeminal nucleuscontraPr50.5
Spinal trigeminal nucleus caudal partcontraSp5C0
Spinal trigeminal nucleus interpolar partcontraSp5I0.5
Spinal trigeminal nucleus oral partcontraSp5O0.5
Spinal vestibular nucleuscontraSpVe1
Vestibular nucleicontraVnc1
Nucleus YcontraY1
Subnucleus fcontraVncf-0.5
Subnucleus XcontraVncX-0.5
Superior vestibular nucleuscontraSuVe1
Lateral part of the superior vestibular nucleuscontraLSuVe-0.5
Superior vestibular nucleus dorsal partcontraSuVeD-0.5
Superior vestibular nucleus medial partcontraSuVeM-0.5
Medial vestibular nucleuscontraMVe3
Medial vestibular nucleus caudal partcontraMVeP1
Medial vestibular nucleus rostral partcontraMVeR1
Lateral vestibular nucleuscontraLVe2
Lateral vestibular nucleus ventrolateral partcontraLVeVL-0.5
Inferior vestibular nucleuscontraIVN2
Nucleus of the solitary tractcontraSol0
Parasolitary nucleuscontraPSol2
Dorsal raphe nucleuscontraDR0.5
Dorsal raphe nucleus pontine partcontraDRPo-0.5
Medulla oblongata lateral partcontraMeObL1
Inferior olivecontraIO3
Inferior olive caudal partcontraIOCa0.5
Inferior olive dorsal nucleuscontraIOD0
Inferior olive dorsal nucleus caudolateral partcontraIODcl1
Inferior olive medial nucleus caudal partcontraIOMc-0.5
Inferior olive ventrolateral protrusioncontraIOVL-0.5
Inferior olive principal nucleuscontraIOPr0
Rostral ventral respiratory groupcontraRVRG0.5
Lateral preoptic area medial partcontraLPOm0
Medial preoptic areacontraMPA0
Dorsomedial hypothalamic nucleuscontraDMHy0
Lateral hypothalamic area medial part [Preoptic anterior region]contraLHAmpar0
Lateral zonecontraLHA-0.5
Lateral hypothalamic areacontraLH3
Anterior hypothalamic areacontraAHA0
Dorsal hypothalamic areacontraDA1
Dorsomedial nucleus posterior partcontraDMHp1
Posterior hypothalamic nucleuscontraPH1
Ventromedial hypothalamic nucleuscontraVMH0
Dorsomedial paraventricular hypothalamic nucleuscontraPaDM0
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAP0
Paraventricular hypothalamic nucleuscontraPa0
Supraoptic nucleus [Supraoptic region]contraSO0
Mammillary bodycontraCMAM0
ThalamuscontraT3
Central medial thalamic nucleuscontraCM1
Centrolateral thalamic nucleuscontraCL2
Parafascicular thalamic nucleuscontraPF3
Parafascicular thalamic nucleus prerubral partcontraPFPR2
Posterior thalamic nuclear groupcontraPo1
Mediodorsal thalamic nucleuscontraMD-0.5
Ventral anterior-lateral complex of the thalamuscontraVAL-0.5
Ventrolateral thalamic nucleuscontraVL3
Ventral posterior thalamic complexcontraVPT1
Ventral posteromedial thalamic nucleuscontraVPM-0.5
Ventromedial thalamic nucleuscontraVM3
Ventromedial thalamic nucleus caudal partcontraVMc2
Ventromedial thalamic nucleus caudal two thirdscontraVMctt2
Laterodorsal thalamic nucleuscontraLD0
Posterior groupcontraPTG-0.5
Ventral medial nucleus of the thalamuscontraVMT2
Zona incertacontraZI1
Nucleus of the fields of ForelcontraF2
Anterior pretectal nucleuscontraAPT1
Posterior pretectal nucleuscontraPPT0
Bed nucleus of the stria terminaliscontraBST0
Nucleus of the posterior commissurecontraPCom2
Ventral lateral geniculate nucleuscontraVLG0
Top of 3d ventriclecontraT3V0
Cervical segment 1contraCS13
Spinal cord layer 7 C1contraSCL7C13
Cervical segment 2contraCS23
Spinal cord layers C2contraSCLC21
Spinal cord layer 7 C2contraSCL7C23
Cervical segment 3contraCS31
Spinal cord layer 7 C3contraSCL7C33
Cervical segment 4contraCS41
Intermediomedial cell column C4contraIMMC4-0.5
Spinal cord layer 7 C4contraSCL7C43
Intermediomedial cell column C5contraIMMC5-0.5
Spinal cord layer 7 C5contraSCL7C53
Spinal cord layer 7 C6contraSCL7C63
Spinal cord layer 7 C7contraSCL7C73
Spinal cord layer 7 C8contraSCL7C83
Spinal cord layer 7 T1contraSCL7T13
Spinal cord layer 7 T2contraSCL7T23
Spinal cord layer 7 T3contraSCL7T33
Spinal cord layer 7 T4contraSCL7T43
Spinal cord layer 7 T5contraSCL7T53
Spinal cord layer 7 T6contraSCL7T63
Spinal cord layer 7 T7contraSCL7T73
Spinal cord layer 7 T8contraSCL7T83
Spinal cord layer 7 T9contraSCL7T93
Spinal cord layer 7 T10contraSCL7T103
Spinal cord layer 7 T11contraSCL7T113
Spinal cord layer 7 T12contraSCL7T123
Spinal cord layer 7 T13contraSCL7T133
Intermediomedial cell column L1contraIMML11
Spinal cord layer 7 L1contraSCL7L13
Intermediomedial cell column L2contraIMML21
Spinal cord layer 7 L2contraSCL7L23
Intermediomedial cell column L3contraIMML31
Spinal cord layer 7 L3contraSCL7L33
Intermediomedial cell column L4contraIMML41
Spinal cord layer 7 L4contraSCL7L43
Intermediomedial cell column L5contraIMML51
Spinal cord layer 7 L5contraSCL7L53
Intermediomedial cell column L6contraIMML61
Spinal cord layer 7 L6contraSCL7L63
Spinal cord layer 7 S1contraSCL7S13
Spinal cord layer 7 S2contraSCL7S23
Spinal cord layer 7 S3contraSCL7S33
Spinal cord layer 7 S4contraSCL7S43
Central grayipsiCG1
Central gray pons partipsiCGP1
Medial longitudinal fasciculusipsimlf-0.5
Nuclei of the lateral lemniscusipsiNLL0.5
Nucleus of DarkschewitschipsiDk-0.5
Oculomotor systemipsiOCS3
Oculomotor nucleusipsi31
Oculomotor nucleus caudal partipsi3C1
Medial accessory oculomotor nucleusipsiMA3-0.5
Periaqueductal grayipsiPAG0
Lateral periaqueductal grayipsiLPAG-0.5
Ventral periaqueductal grayipsiVPAG1
Red nucleusipsiR1
Pararubral nucleusipsiPaR0
Prerubral fieldipsiPR1
Red nucleus magnocellular partipsiRMC1
Red nucleus magnocellular part caudal regionipsiRMCC-0.5
Red nucleus parvicellular partipsiROC1
Superior colliculus superficial layersipsiSCs0
Superior colliculus intermediate layersipsiSCi0
Intermediate gray layer of the superior colliculusipsiInG1
Intermediate white layer of the superior colliculusipsiInWh0
Superior colliculus deep layersipsiSCd0
Deep gray layer of the superior colliculusipsiDpG0
Deep white layer of the superior colliculusipsiDpWh0
Central tegmental field dorsal partipsiTGACd0
Substantia nigra compact partipsiSNC0
Substantia nigra lateral partipsiSNL0
Substantia nigra reticular partipsiSNR0
Ventral tegmental area A10ipsiVTA0
Ventral tegmental area A10 dorsolateral part dorsal periventricular partipsiVTAdLdv1
Interfascicular nucleusipsiIF0
Ventral tegmental relay zoneipsiVTRZ0
Caudal linear nucleus of the rapheipsiCLi0
Peripeduncular nucleusipsiPP0
Retrorubral nucleusipsiRR0
Ventral tegmental decussationipsivtgx1
Laterodorsal tegmental nucleusipsiLDTg1
Dorsomedial pontine tegmentumipsiTGADM1
Ventral tegmental nucleusipsiVTg1
Dorsal tegmental nucleusipsiDTg1
Pedunculopontine tegmental nucleusipsiPPTg1
Interstitial nucleus of CajalipsiInC1
CerebellumipsiCERE-0.5
Cerebellar cortexipsiCERC2
Paraflocculus ventral partipsiPFlv-0.5
Paravermis areaipsiCERCPA-0.5
VermisipsiVERM-0.5
Cerebellar lobule 2a zone AipsiCERL2aA-0.5
Cerebellar lobule 2b zone AipsiCERL2bA-0.5
Cerebellar lobule 3a zone AipsiCERL3aA-0.5
Cerebellar lobule 3b zone AipsiCERL3bA-0.5
Cerebellar lobule 1 zone AipsiCERL1A-0.5
Cerebellar lobule 1 zone A medial aspectipsiCERL1AM0
Cerebellar lobule 4 zone AipsiCERL4A1
Cerebellar lobule 4 zone XipsiCERL4X1
Cerebellar lobule 5 zone AipsiCERL5A1
Cerebellar lobule 5 zone XipsiCERL5X1
Cerebellar lobule 7a zone AipsiCERL7aA-0.5
Cerebellar lobule 7b zone AipsiCERL7bA-0.5
Cerebellar lobule 7 zone A medial aspectipsiCERL7AM0
Cerebellar lobule 8 zone AipsiCERL8A-0.5
Cerebellar lobule 8 zone A medial aspectipsiCERL8AM0
Cerebellar lobule 9ipsiCERL91
Cerebellar lobule 9a zone AipsiCERL9aA1
Cerebellar lobule 9a zone A medial aspectipsiCERL9aAM0
Cerebellar lobule 9a zone XipsiCERL9aX1
Cerebellar lobule 9b zone AipsiCERL9bA1
Cerebellar lobule 9b zone XipsiCERL9bX1
Cerebellar lobule 9c zone AipsiCERL9cA-0.5
Cerebellar lobule 10b zone AipsiCERL10bA1
Cerebellar lobule 10b zone XipsiCERL10bX1
Cerebellar lobule 10a zone AipsiCERL10aA1
Cerebellar lobule 10a zone XipsiCERL10aX1
Cerebellar lobule 6a zone AipsiCERL6aA-0.5
Cerebellar lobule 6b zone AipsiCERL6bA-0.5
Cerebellar lobule 6c zone AipsiCERL6cA-0.5
Cerebellar lobule 6d zone AipsiCERL6dA-0.5
Cerebellar cortex D zonesipsiCeD3
C1-zone of the cerebellar cortexipsiCeZC13
C2-zone of the cerebral cortexipsiCeZC23
A-zone of the cerebellar cortexipsiCeZA3
Lateral cerebellar nucleus caudal partipsiCERLc1
Medial cerebellar nucleus dorsal partipsiMedD-0.5
Medial cerebellar nucleus rostral partipsiMedR-0.5
Medial cerebellar nucleus ventral partipsiMedV-0.5
FlocculusipsiFl-0.5
Superior medullary velumipsiSMV-0.5
Juxtarestiform bodyipsijx-0.5
Superior cerebellar peduncleipsisucep-2
A5 noradrenaline cellsipsiA50
Decussatio of the superior cerebellar peduncleipsixscp-2
Locus coeruleusipsiLC2
Locus coeruleus posterior partipsiLCp2.5
Locus coeruleus rostrodorsal partipsiLCcBRD-0.5
Locus coeruleus ventrolateral partipsiLCvL2.5
Pontine periventricular grayipsiPPG-0.5
Pontine grayipsiPG0
Reticulotegmental nucleus of the ponsipsiRtTg0
Prepositus nucleusipsiPr1
Reticular systemipsiRF1
Dorsal reticular formationipsiDRF-0.5
Paramedian reticular nucleusipsiPMn1
Ventral reticular formationipsiVRF-0.5
Nucleus reticular ventralis pars betaipsiRVb1
Deep mesencephalic nucleusipsiDpMe0
Pontine reticular nucleusipsiPRN1
Pontine reticular nucleus oral partipsiPnO0
Pontine reticular nucleus caudal partipsiPNC1
Caudal part of the nucleus reticularis pontis caudalisipsiPNCC-0.5
DorsomediaL pontine reticular nucleus caudal partipsiPNCdm-0.5
Cuneiforme nucleusipsiCnF1
Parabrachial nucleusipsiPB1
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe-1
Gigantocellular reticular nucleusipsiGi3
Gigantocellular reticular nucleus dorsal partipsiGidp-0.5
Gigantocellular reticular nucleus lateral partipsiGirL0
Gigantocellular reticular nucleus ventral partipsiGiV-0.5
Lateral reticular nucleusipsiLRt1
Medullary reticular nucleusipsiMdD2
Medullary reticular nucleus dorsal partipsiMdDd2
Parvicellular reticular nucleusipsiPCRt0
Medulla oblongataipsiMeOb1
Principal sensory trigeminal nucleusipsiPr50
Spinal trigeminal nucleus caudal partipsiSp5C0
Spinal trigeminal nucleus interpolar partipsiSp5I0
Spinal trigeminal nucleus oral partipsiSp5O0
Trochlear nucleusipsi4-0.5
Interstitial nucleus of the vestibulocochlear nerveipsiI81
Spinal vestibular nucleusipsiSpVe2
Vestibular nucleiipsiVnc1
Nucleus YipsiY3
Subnucleus fipsiVncf-0.5
Subnucleus XipsiVncX-0.5
Superior vestibular nucleusipsiSuVe2
Superior vestibular nucleus dorsal partipsiSuVeD3
Superior vestibular nucleus dorsolateral partipsiSuVeDL3
Medial vestibular nucleusipsiMVe-0.5
Medial vestibular nucleus caudal partipsiMVeP1
Medial vestibular nucleus rostral partipsiMVeR1
Medial vestibular nucleus ventral partipsiMVeV1
Lateral vestibular nucleusipsiLVe2
Inferior vestibular nucleusipsiIVN-0.5
Inferior vestibular nucleus lateral rostral partipsiIVNLR-0.5
Nucleus of the solitary tractipsiSol1
Parasolitary nucleusipsiPSol1
Dorsal raphe nucleusipsiDR0
Dorsal raphe nucleus pontine partipsiDRPo-0.5
Rostral linear nucleus of the rapheipsiRLi0
Raphe magnus nucleusipsiRMg0
Infracerebellar nucleusipsiInf1
Inferior oliveipsiIO2
Inferior olive caudal partipsiIOCa-0.5
Inferior olive dorsal nucleusipsiIOD-1
Inferior olive dorsal nucleus caudal partipsiIODC-1
Inferior olive dorsal nucleus dorsal leafipsiIODdL-1
Lateral part of the rostral inferior olive dorsal nucleusipsiIODRL-1
Inferior olive medial nucleusipsiIOM-0.5
Inferior olive medial nucleus caudal partipsiIOMc2
Inferior olive beta subnucleusipsiIOBe-1
Inferior olive principal nucleusipsiIOPr0
Inferior olive principal nucleus dorsal leafipsiIOPrdl-1
Rostral ventral respiratory groupipsiRVRG2
Uncinate nucleusipsiUn-0.5
Lateral preoptic area medial partipsiLPOm0
Medial preoptic areaipsiMPA0
Dorsomedial hypothalamic nucleusipsiDMHy0
Lateral hypothalamic area medial part [Preoptic anterior region]ipsiLHAmpar0
Lateral zoneipsiLHA-0.5
Lateral hypothalamic areaipsiLH0
Anterior hypothalamic areaipsiAHA0
Dorsal hypothalamic areaipsiDA0
Dorsomedial nucleus posterior partipsiDMHp0
Posterior hypothalamic areaipsiPHA-0.5
Posterior hypothalamic nucleusipsiPH1
Ventromedial hypothalamic nucleusipsiVMH3
Dorsomedial paraventricular hypothalamic nucleusipsiPaDM0
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP0
Paraventricular hypothalamic nucleusipsiPa0
Supraoptic nucleus [Supraoptic region]ipsiSO0
Mammillary bodyipsiCMAM0
Central medial thalamic nucleusipsiCM0
Parafascicular thalamic nucleusipsiPF1
Parafascicular thalamic nucleus prerubral partipsiPFPR0
Posterior thalamic nuclear groupipsiPo0
Ventral anterior-lateral complex of the thalamusipsiVAL1
Ventrolateral thalamic nucleusipsiVL1
Ventral posterior thalamic complexipsiVPT0
Ventromedial thalamic nucleusipsiVM-0.5
Intralaminar nucleiipsiILN1
Laterodorsal thalamic nucleusipsiLD0
Supraoculomotor periaqueductal gray ventral partipsiSu3V3
Reticular thalamic nucleus rostral partipsiRtr0
Ventral medial nucleus of the thalamusipsiVMT0
Zona incertaipsiZI0
Nucleus of the fields of ForelipsiF0
Anterior pretectal nucleusipsiAPT0
Posterior pretectal nucleusipsiPPT0
Bed nucleus of the stria terminalisipsiBST0
Nucleus of the posterior commissureipsiPCom-0.5
Ventral lateral geniculate nucleusipsiVLG0
Top of 3d ventricleipsiT3V0
Cervical segment 1ipsiCS13
Central cervical nucleus C1ipsiCeCvC13
Ventral horn C1ipsiVHC13
Spinal cord layer 7 C1ipsiSCL7C11
Cervical segment 2ipsiCS23
Central cervical nucleus C2ipsiCeCvC23
Ventral horn C2ipsiVHC23
Spinal cord layer 7 C2ipsiSCL7C21
Cervical segment 3ipsiCS33
Central cervical nucleus C3ipsiCeCvC33
Ventral horn C3ipsiVHC33
Spinal cord layer 7 C3ipsiSCL7C31
Cervical segment 4ipsiCS43
Central cervical nucleus C4ipsiCeCvC43
Intermediomedial cell column C4ipsiIMMC4-0.5
Ventral horn C4ipsiVHC43
Spinal cord layer 7 C4ipsiSCL7C41
Cervical segment 5ipsiCS53
Intermediomedial cell column C5ipsiIMMC5-0.5
Spinal cord layer 7 C5ipsiSCL7C51
Spinal cord layer 7 C6ipsiSCL7C61
Spinal cord layer 7 C7ipsiSCL7C71
Spinal cord layer 7 C8ipsiSCL7C81
Spinal cord layer 7 T1ipsiSCL7T11
Spinal cord layer 7 T2ipsiSCL7T21
Spinal cord layer 7 T3ipsiSCL7T31
Spinal cord layer 7 T4ipsiSCL7T41
Spinal cord layer 7 T5ipsiSCL7T51
Spinal cord layer 7 T6ipsiSCL7T61
Spinal cord layer 7 T7ipsiSCL7T71
Spinal cord layer 7 T8ipsiSCL7T81
Spinal cord layer 7 T9ipsiSCL7T91
Spinal cord layer 7 T10ipsiSCL7T101
Spinal cord layer 7 T11ipsiSCL7T111
Spinal cord layer 7 T12ipsiSCL7T121
Spinal cord layer 7 T13ipsiSCL7T131
Spinal cord layer 7 L1ipsiSCL7L11
Spinal cord layer 7 L2ipsiSCL7L21
Spinal cord layer 7 L3ipsiSCL7L31
Spinal cord layer 7 L4ipsiSCL7L41
Spinal cord layer 7 L5ipsiSCL7L51
Spinal cord layer 7 L6ipsiSCL7L61
Spinal cord layer 7 S1ipsiSCL7S11
Spinal cord layer 7 S2ipsiSCL7S21
Spinal cord layer 7 S3ipsiSCL7S31
Spinal cord layer 7 S4ipsiSCL7S41
Limb of the facial nerveipsi7fnLi-0.5
Submandibular glandcontraOrgsSubg-10
Flexor digitorum musclecontraMuscFD-0.5
Tibialis anterior musclecontraMuscTA-0.5
Gastrocnemius musclecontraMuscGC-0.5
Submandibular glandipsiOrgsSubg-10
Flexor digitorum muscleipsiMuscFD-0.5
Tibialis anterior muscleipsiMuscTA-0.5
Gastrocnemius muscleipsiMuscGC-0.5

Input from

NameSideAbbr.WeightDetails
Periaqueductal graycontraPAG0
Dorsal periaqueductal gray caudal partcontraDPAGC0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Dorsolateral periaqueductal gray rostral partcontraPAGdlr0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0
Ventral tegmental area A10contraVTA0
Medial part of the pyramiscontraMPYR-0.5
Cerebellar lobule 2a zone AcontraCERL2aA3
Cerebellar lobule 2b zone AcontraCERL2bA3
Cerebellar lobule 3a zone AcontraCERL3aA3
Cerebellar lobule 3b zone AcontraCERL3bA3
Cerebellar lobule 1 zone AcontraCERL1A3
Cerebellar lobule 4contraCERL4-0.5
Cerebellar lobule 4 zone AcontraCERL4A3
Cerebellar lobule 4 zone XcontraCERL4X-0.5
Cerebellar lobule 5contraCERL5-0.5
Cerebellar lobule 5 zone AcontraCERL5A3
Cerebellar lobule 5 zone XcontraCERL5X-0.5
Cerebellar lobule 5 lateral halfcontraCERL5Lh1
Cerebellar lobule 7contraCERL7-0.5
Cerebellar lobule 7acontraCERL7a-0.5
Cerebellar lobule 7a zone AcontraCERL7aA3
Cerebellar lobule 7a medial halfcontraCERL7amh1
Cerebellar lobule 7a lateral halfcontraCERL7aLh1
Cerebellar lobule 7bcontraCERL7b-0.5
Cerebellar lobule 7b zone AcontraCERL7bA3
Rostral half of cerebellar lobule 8contraCERL8roh-0.5
Cerebellar lobule 9a zone AcontraCERL9aA3
Cerebellar lobule 9a zone XcontraCERL9aX-0.5
Cerebellar lobule 9b zone AcontraCERL9bA-0.5
Cerebellar lobule 9b zone XcontraCERL9bX-0.5
Cerebellar lobule 10b zone AcontraCERL10bA-0.5
Cerebellar lobule 10b zone XcontraCERL10bX-0.5
Cerebellar lobule 10a zone AcontraCERL10aA-0.5
Cerebellar lobule 10a zone XcontraCERL10aX-0.5
Cerebellar lobule 6contraCERL6-0.5
Cerebellar lobule 6acontraCERL6a-0.5
Cerebellar lobule 6a zone AcontraCERL6aA3
Cerebellar lobule 6a medial halfcontraCERL6amh3
Cerebellar lobule 6a lateral halfcontraCERL6aLh3
Cerebellar lobule 6a medial partcontraCERL6am-0.5
Cerebellar lobule 6bcontraCERL6b-0.5
Cerebellar lobule 6b zone AcontraCERL6bA3
Cerebellar lobule 6b medial halfcontraCERL6bmh3
Cerebellar lobule 6b lateral halfcontraCERL6bLh3
Cerebellar lobule 6ccontraCERL6c-0.5
Cerebellar lobule 6c zone AcontraCERL6cA3
Cerebellar lobule 6c lateral partcontraCERL6cL3
Cerebellar lobule 6c caudal partcontraCERL6cC-0.5
Cerebellar lobule 6c medial halfcontraCERL6cmh3
Cerebellar lobule 6dcontraCERL6d-0.5
Cerebellar lobule 6d medial halfcontraCERL6dmh3
Cerebellar lobule 6d lateral halfcontraCERL6dLh3
Midline cerebellar vermiscontraVERMM3
Medial cerebellar nucleuscontraMed1
Locus coeruleuscontraLC0.5
Dorsal peduncular subdivision of the ponscontraDPePo3
Medial pontine graycontraMePG-0.5
Dorsal part of the reticulotegmental nucleus of the ponscontraRtTgD-0.5
Middle three fifthes of the reticulotegmental nucleus of the ponscontraRtTgMTF-0.5
Reticulotegmental nucleus of the pons medial partcontraRtTgm-0.5
Reticulotegmental nucleus of the pons ventrolateral partcontraRtTgVL3
Ventral pontine graycontraVPG-0.5
Pontine nucleicontraPn0
Pontine nuclei ventromedial portion of the peripeduncular partcontraPnVMPP-0.5
Pontine nucleus ventral partcontraBPNv-0.5
Pontine reticular nucleuscontraPRN2
Lateral parabrachial nucleuscontraLPB-1
Lateral reticular nucleuscontraLRt-0.5
Lateral reticular nucleus central partcontraLRtC2
Lateral reticular nucleus magnocellular partcontraLRtMC-0.5
Rostral part of the magnocellular lateral reticular nucleuscontraLRtMCR-0.5
Dorsolateral part of the caudal part of the magnocellular lateral reticular nucleuscontraLRtMCCDL1
Caudolateral magnocellular lateral reticular nucleuscontraLRtMCCL-0.5
Caudoventral magnocellular lateral reticular nucleuscontraLRtMCCV-0.5
Middle part of the lateral reticular nucleus magnocellular partcontramiLRtMC-0.5
Lateral reticular nucleus parvicellular partcontraLRtPC-0.5
Medullary reticular nucleus ventrolateral part rostral partcontraMdVLR3
Inferior olivecontraIO3
Inferior olive cap of Kooy of the medial nucleuscontraIOK3
Inferior olive dorsal nucleuscontraIOD3
Inferior olive medial nucleuscontraIOM3
Inferior olive medial nucleus caudal partcontraIOMc3
Inferior olive medial nucleus caudolateral partcontraIOMcL-0.5
Inferior olive medial nucleus medial partcontraIOMm-0.5
Transition zone of the medial accessory olivecontraTIOM3
Inferior olive beta subnucleuscontraIOBe3
Inferior olive ventrolateral protrusioncontraIOVL3
Inferior olive principal nucleus ventral leafcontraIOPrvl-0.5
Inferior olive dorsomedial cell columncontraIOdmc-0.5
Lateral paragigantocellular nucleuscontraLPGi-0.5
Rostral ventral respiratory groupcontraRVRG1
Dorsal part of the crus cerebricontradcp-2
Central cervical nucleus C2contraCeCvC23
Central cervical nucleus C3contraCeCvC33
Spinal cord layer 6 C5contraSCL6C51.5
Spinal cord layer 7 C5contraSCL7C51.5
Spinal cord layer 6 C6contraSCL6C61.5
Spinal cord layer 7 C6contraSCL7C61.5
Spinal cord layer 6 C7contraSCL6C71.5
Spinal cord layer 7 C7contraSCL7C71.5
Spinal cord layer 6 C8contraSCL6C81.5
Spinal cord layer 7 C8contraSCL7C81.5
Spinal cord layer 6 T1contraSCL6T1-0.5
Spinal cord layer 7 T1contraSCL7T1-0.5
Spinal cord layer 7 T4contraSCL7T40.5
Spinal cord layer 7 T5contraSCL7T50.5
Spinal cord layer 7 T6contraSCL7T60.5
Spinal cord layer 7 T7contraSCL7T70.5
Spinal cord layer 7 T8contraSCL7T80.5
Spinal cord layer 7 T9contraSCL7T90.5
Spinal cord layer 7 L1contraSCL7L13
Spinal cord layer 7 L2contraSCL7L23
Spinal cord layer 7 L3contraSCL7L33
Lumbar segment 5contraL5-0.5
Lumbar segment 6contraL6-0.5
Sacral segment 1contraSa1-0.5
Sacral segment 2contraSa2-0.5
Sacral segment 3contraSa3-0.5
Sacral segment 4contraSa4-0.5
Coccygeal segment 1contraCo1-0.5
Coccygeal segment 2contraCo2-0.5
Coccygeal segment 3contraCo3-0.5
Periaqueductal grayipsiPAG0
Dorsal periaqueductal gray caudal partipsiDPAGC0
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0
Dorsolateral periaqueductal gray rostral partipsiPAGdlr0
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0.5
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0.5
Edinger Westphal nucleusipsiEW-0.5
Medial part of the ansiform lobule crus 1ipsiCrus1M3
Ansiform lobule crus 2ipsiCrus23
Paramedian lobuleipsiPM3
Zone A of the paramedian lobuleipsiPMzA3
Medial part of the pyramisipsiMPYR-0.5
VermisipsiVERM3
Anterior lobe A zone medial partipsiAnLAZm-0.5
Anterior lobe zebrin negative band P- 1ipsiAnLP-1-0.5
Cerebellar lobule 2a zone AipsiCERL2aA3
Cerebellar lobule 2b zone AipsiCERL2bA3
Cerebellar lobule 3a zone AipsiCERL3aA3
Cerebellar lobule 3b zone AipsiCERL3bA3
Cerebellar lobule 1 zone AipsiCERL1A3
Cerebellar lobule 4 zone AipsiCERL4A3
Cerebellar lobule 4 zone XipsiCERL4X-0.5
Cerebellar lobule 5 zone AipsiCERL5A3
Cerebellar lobule 5 zone XipsiCERL5X-0.5
Cerebellar lobule 5 lateral halfipsiCERL5Lh1
Cerebellar lobule 7ipsiCERL7-0.5
Cerebellar lobule 7aipsiCERL7a3
Cerebellar lobule 7a zone AipsiCERL7aA3
Cerebellar lobule 7a medial halfipsiCERL7amh1
Cerebellar lobule 7a lateral halfipsiCERL7aLh1
Cerebellar lobule 7bipsiCERL7b3
Cerebellar lobule 7b zone AipsiCERL7bA3
Cerebellar lobule 8 zone AipsiCERL8A-0.5
Rostral half of cerebellar lobule 8ipsiCERL8roh-0.5
Cerebellar lobule 9a zone AipsiCERL9aA3
Cerebellar lobule 9a zone XipsiCERL9aX-0.5
Cerebellar lobule 9b zone AipsiCERL9bA3
Cerebellar lobule 9b zone XipsiCERL9bX-0.5
Cerebellar lobule 9c intermediate partipsiUVUci1
Cerebellar lobule 9c zone AipsiCERL9cA-0.5
Cerebellar lobule 10b zone AipsiCERL10bA-0.5
Cerebellar lobule 10b zone XipsiCERL10bX-0.5
Cerebellar lobule 10a zone AipsiCERL10aA-0.5
Cerebellar lobule 10a zone XipsiCERL10aX-0.5
Cerebellar lobule 6ipsiCERL60
Cerebellar lobule 6aipsiCERL6a-0.5
Cerebellar lobule 6a zone AipsiCERL6aA3
Cerebellar lobule 6a medial halfipsiCERL6amh3
Cerebellar lobule 6a lateral halfipsiCERL6aLh3
Cerebellar lobule 6bipsiCERL6b-0.5
Cerebellar lobule 6b zone AipsiCERL6bA3
Cerebellar lobule 6b medial halfipsiCERL6bmh3
Cerebellar lobule 6b lateral halfipsiCERL6bLh3
Cerebellar lobule 6cipsiCERL6c-0.5
Cerebellar lobule 6c zone AipsiCERL6cA3
Cerebellar lobule 6c lateral partipsiCERL6cL3
Cerebellar lobule 6c caudal partipsiCERL6cC-0.5
Cerebellar lobule 6c medial halfipsiCERL6cmh3
Cerebellar lobule 6dipsiCERL6d-0.5
Cerebellar lobule 6d zone AipsiCERL6dA-0.5
Cerebellar lobule 6d medial halfipsiCERL6dmh3
Cerebellar lobule 6d lateral halfipsiCERL6dLh3
Midline cerebellar vermisipsiVERMM3
Purkinje cells of the vermisipsiVERMPJ-0.5
Cerebellar cortex B zonesipsiBZCERC-0.5
Cerebellar cortex D zonesipsiCeD3
Cerebellar cortex x zonesipsiCeZX2
C1-zone of the cerebellar cortexipsiCeZC13
C2-zone of the cerebral cortexipsiCeZC23
Cerebellar cortex A zonesipsiCeZoA2
A-zone of the cerebellar cortexipsiCeZA3
PonsipsiP3
Locus coeruleusipsiLC1
Dorsal peduncular subdivision of the ponsipsiDPePo3
Medial pontine grayipsiMePG-0.5
Reticulotegmental nucleus of the ponsipsiRtTg3
Dorsal part of the reticulotegmental nucleus of the ponsipsiRtTgD-0.5
Middle three fifthes of the reticulotegmental nucleus of the ponsipsiRtTgMTF-0.5
Reticulotegmental nucleus of the pons medial partipsiRtTgm-0.5
Reticulotegmental nucleus of the pons ventrolateral partipsiRtTgVL3
Ventral pontine grayipsiVPG-0.5
Pontine nucleiipsiPn0
Pontine nuclei ventromedial portion of the peripeduncular partipsiPnVMPP-0.5
Pontine nucleus ventral partipsiBPNv-0.5
Pontine reticular nucleusipsiPRN2
Pontine reticular nucleus central partipsiNRTPc3
Pontine reticular nucleus ventral partipsiPnV3
Pontine reticular nucleus caudal and pericentral partipsiPRNcp3
Pontine reticular nucleus caudal partipsiPNC1
Pontine reticular nucleus pericentral partipsiNRTPp3
Parabrachial nucleusipsiPB0
Lateral parabrachial nucleusipsiLPB0
Lateral reticular nucleusipsiLRt-0.5
Lateral reticular nucleus magnocellular partipsiLRtMC-0.5
Rostral part of the magnocellular lateral reticular nucleusipsiLRtMCR-0.5
Dorsolateral part of the caudal part of the magnocellular lateral reticular nucleusipsiLRtMCCDL1
Caudolateral magnocellular lateral reticular nucleusipsiLRtMCCL-0.5
Caudoventral magnocellular lateral reticular nucleusipsiLRtMCCV-0.5
Dorsocaudal part of the lateral reticular nucleus magnocellular partipsiDCLRtMC-0.5
Middle part of the lateral reticular nucleus magnocellular partipsimiLRtMC-0.5
Medullary reticular nucleus dorsal partipsiMdDd3
Medullary reticular nucleus ventrolateral part rostral partipsiMdVLR3
Inferior oliveipsiIO-0.5
Inferior olive medial nucleusipsiIOM-0.5
Inferior olive subnucleus A of medial nucleusipsiIOA-0.5
Inferior olive subnucleus B of medial nucleusipsiIOB-0.5
Inferior olive medial nucleus caudal partipsiIOMc-0.5
Inferior olive beta subnucleusipsiIOBe3
Inferior olive dorsomedial cell columnipsiIOdmc-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Rostral ventral respiratory groupipsiRVRG2
Lateral hypothalamic area perifornical partipsiPFx1
Dorsomedial hypothalamic areaipsiDMHyA3
Paraventricular hypothalamic nucleus dorsal cap [Periventricular zone anterior region]ipsiPaDC-1
Paraventricular hypothalamic nucleusipsiPa-1
Paraventricular hypothalamic nucleus lateral aspect of the caudal parvocellular divisionipsiPavPoLC3
Zona incertaipsiZI3
Dorsal part of the crus cerebriipsidcp-2
Central cervical nucleus C2ipsiCeCvC21
Central cervical nucleus C3ipsiCeCvC31
Spinal cord layer 6 C4ipsiSCL6C43
Spinal cord layer 7 C4ipsiSCL7C43
Spinal cord layer 6 C5ipsiSCL6C53
Spinal cord layer 7 C5ipsiSCL7C53
Spinal cord layer 6 C6ipsiSCL6C63
Spinal cord layer 7 C6ipsiSCL7C63
Spinal cord layer 6 C7ipsiSCL6C73
Spinal cord layer 7 C7ipsiSCL7C73
Spinal cord layer 6 C8ipsiSCL6C83
Spinal cord layer 7 C8ipsiSCL7C83
Spinal cord layer 6 T1ipsiSCL6T13
Spinal cord layer 7 T1ipsiSCL7T13
Spinal cord layer 7 T4ipsiSCL7T41
Spinal cord layer 7 T5ipsiSCL7T51
Spinal cord layer 7 T6ipsiSCL7T61
Spinal cord layer 7 T7ipsiSCL7T71
Spinal cord layer 7 T8ipsiSCL7T81
Spinal cord layer 7 T9ipsiSCL7T91
Spinal cord layer 7 L1ipsiSCL7L13
Spinal cord layer 7 L2ipsiSCL7L23
Spinal cord layer 7 L3ipsiSCL7L33
Lumbar segment 5ipsiL5-0.5
Lumbar segment 6ipsiL6-0.5
Sacral segment 1ipsiSa1-0.5
Sacral segment 2ipsiSa2-0.5
Sacral segment 3ipsiSa3-0.5
Sacral segment 4ipsiSa4-0.5
Coccygeal segment 1ipsiCo1-0.5
Coccygeal segment 2ipsiCo2-0.5
Coccygeal segment 3ipsiCo3-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





Homepage | Staff | neuroVIISAS | Rat connectome | Other connectomes | Neuroimaging | Neurodegeneration | Students | Links | Publications