University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Locus coeruleus rostral part right


Abbreviation
LCRo
Color       
Superior regionsLocus coeruleus cell body region

SynonymsAbbr.Language
Locus coeruleus rostral partLCRo 
Rostral part of locus coeruleus  
Rostral level of locus coeruleus Eng

SubregionsSide
Core of the rostral locus coeruleusright
Locus coeruleus rostral two thirdsright
Locus coeruleus ventral portion of the rostral poleright

Output to

NameSideAbbr.WeightDetails
Inferior colliculuscontraICOL0.5
Superior colliculuscontraSC1
ParaflocculuscontraPFl0.5
Cerebellar lobule 7contraCERL70.5
Cerebellar lobule 6contraCERL60.5
Reticular systemcontraRF1
Principal sensory trigeminal nucleuscontraPr52
Cochlear nucleuscontraCON1
Medial preoptic nucleuscontraMPO-0.5
Anteroventral thalamic nucleuscontraAV1
Central medial thalamic nucleus lateral partcontraCMl1
Centrolateral thalamic nucleus rostral partcontraCLr1
Medial part of posterior thalamic nuclear groupcontraPoM1
Ventrolateral thalamic nucleuscontraVL2
Ventrolateral thalamic nucleus dorsal partcontraVLD1
Ventral posterior thalamic complex medial partcontraVPTm2
Ventrobasal complexcontraVB1
Lateral posterior thalamic nucleuscontraLP0.5
Reticular thalamic nucleuscontraRt1
Primary somatosensory cortexcontraS10.5
Secondary somatosensory cortexcontraS20.5
Primary visual cortexcontraV10.5
Secondary visual cortex medial areacontraV2M0.5
Secondary visual cortex lateral areacontraV2L0.5
Dorsal geniculate nucleus lateral partcontraDLGl0.5
Ventral lateral geniculate nucleuscontraVLG0.5
Inferior colliculusipsiICOL0.5
Superior colliculusipsiSC1
ParaflocculusipsiPFl1
Cerebellar lobule 7ipsiCERL71
Cerebellar lobule 6ipsiCERL61
Reticular systemipsiRF1.5
Principal sensory trigeminal nucleusipsiPr51.5
Cochlear nucleusipsiCON1.5
Dorsal raphe nucleus caudal partipsiDRC-0.5
Dorsal raphe nucleus lateral wingipsiDRlw1
Dorsal raphe nucleus median partipsiDRM1
Dorsal raphe nucleus ventromedial subdivisionipsiDRvme1
Raphe magnus nucleusipsiRMg1
Medial preoptic nucleusipsiMPO1
Lateral hypothalamic areaipsiLH3
Posterior hypothalamic nucleusipsiPH3
Paraventricular hypothalamic nucleus ventral part [Periventricular zone anterior region]ipsiPaV-0.5
Lateral mammillary nucleusipsiLM3
Anteroventral thalamic nucleusipsiAV3
Central medial thalamic nucleus lateral partipsiCMl2
Centrolateral thalamic nucleus rostral partipsiCLr2
Parafascicular thalamic nucleusipsiPF2
Medial part of posterior thalamic nuclear groupipsiPoM2
Mediodorsal thalamic nucleusipsiMD3
Ventrolateral thalamic nucleus dorsal partipsiVLD2
Ventrobasal complexipsiVB2
Lateral posterior thalamic nucleusipsiLP1
Reticular thalamic nucleusipsiRt2
Lateral habenular nucleusipsiLHb3
HippocampusipsiHIPP1
Ventral hippocampusipsiHIPPv1
Entorhinal cortexipsiEnt2
Limbic regionsipsiLR1
Anterior cingulate cortexipsiACC0.5
Frontal association cortexipsiFrA0
Perirhinal cortexipsiA351
Somatomotoric regionsipsiSMR0
Medial prefrontal cortexipsimPFC3
Primary somatosensory cortexipsiS12
Secondary somatosensory cortexipsiS22
Visual regionsipsiVR0
Primary visual cortexipsiV11
Secondary visual cortex medial areaipsiV2M1
Secondary visual cortex lateral areaipsiV2L1
Anterior medial frontal cortexipsiAMFC1
Dorsal geniculate nucleus lateral partipsiDLGl1
Ventral lateral geniculate nucleusipsiVLG1
Interpeduncular nucleusipsiIP3

Input from

NameSideAbbr.WeightDetails
Dorsolateral periaqueductal graycontraDLPAG1
Ventrolateral periaqueductal graycontraVLPAG1
Substantia nigra compact part dorsal tiercontraSNCD1
Medial tuberal nucleuscontraMTuN1
Tuberomammillary nucleus dorsomedial partcontraTBMdm0.5
Tuberomammillary nucleus ventrolateral partcontraTBMvl0.5
Ventral tuberomammillary nucleuscontraVTM0.5
Caudal tuberomammillary nucleuscontraTuMC0.5
Lateral hypothalamic areacontraLH1
Arcuate nucleus medial partcontraArcM1
Supraoptic nucleus [Supraoptic region]contraSO1
Central grayipsiCG0
Periaqueductal grayipsiPAG-2
Dorsolateral periaqueductal grayipsiDLPAG3
Lateral periaqueductal grayipsiLPAG3
Ventrolateral periaqueductal grayipsiVLPAG4
Central tegmental fieldipsiTGAC-0.5
Substantia nigra compact partipsiSNC2
Substantia nigra reticular partipsiSNR0
Ventral tegmental area A10ipsiVTA1
Barringtons nucleusipsiBar1
Locus coeruleus caudal partipsiLCca-0.5
Dorsomedial tegmental areaipsiDMTg0
Prepositus nucleusipsiPr0
Deep mesencephalic nucleusipsiDpMe1
Pontine reticular nucleusipsiPRN0
Cuneiforme nucleusipsiCnF1
Parabrachial nucleus medialipsiPBnMe-1
Gigantocellular reticular nucleusipsiGi1
Subcoeruleus nucleusipsiSubC0
Superior vestibular nucleusipsiSuVe0
Dorsal raphe nucleus caudal partipsiDRC-0.5
Dorsal raphe nucleus dorsomedial subdivisionipsiDRdm2
Median raphe nucleusipsiMnR0
Raphe interpositus nucleusipsiRIP0
Raphe magnus nucleusipsiRMg1
Dorsal paragigantocellular nucleusipsiDPGi0
Lateral paragigantocellular nucleusipsiLPGi0
Diagonal band of BrocaipsiDBB1
Medial tuberal nucleusipsiMTuN1
Medial preoptic areaipsiMPA3
Lateral preoptic nucleusipsiLPN3
Ventrolateral preoptic nucleusipsiVLPO2
Ventromedial preoptic nucleusipsiVMPO1
Tuberomammillary nucleusipsiTuM1
Tuberomammillary nucleus dorsomedial partipsiTBMdm0.5
Tuberomammillary nucleus ventrolateral partipsiTBMvl2
Ventral tuberomammillary nucleusipsiVTM2
Caudal tuberomammillary nucleusipsiTuMC0.5
Lateral hypothalamic areaipsiLH4
Lateral hypothalamic area perifornical partipsiPFx1.5
Lateral hypothalamic area posterior partipsiLHAp3
Anterior hypothalamic areaipsiAHA2
Posterior hypothalamic areaipsiPHA1
Periventricular zoneipsiPVZ0
Arcuate nucleusipsiArc1.5
Paraventricular hypothalamic nucleusipsiPa1
Supraoptic nucleus [Supraoptic region]ipsiSO1
Lateral mammillary nucleusipsiLM0
Supramammillar nucleusipsiSuM1
Retrochiasmatic areaipsiRCh1
Supraoculomotor periaqueductal grayipsiSu31
Bed nucleus of the stria terminalisipsiBST1
Bed nucleus of the stria terminalis anterior medial partipsiBSTAM2
Bed nucleus of the stria terminalis oval nucleusipsiBSTo1
Bed nucleus of the stria terminalis lateral divisionipsiBSTL3
Ventral pallidumipsiVP1
Subthalamic nucleus medial partipsiSThM3
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL2.5
Agranular insular cortex posterior part depressor siteipsiAIPd1
Medial prefrontal cortexipsimPFC-0.5
Dorsal horn L1ipsiDHL1-0.5
Dorsal horn L2ipsiDHL2-0.5
Dorsal horn L3ipsiDHL3-0.5
Dorsal horn L4ipsiDHL4-0.5
Dorsal horn L5ipsiDHL5-0.5
Dorsal horn L6ipsiDHL6-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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