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Rat connectome



Flocculus left


Abbreviation
Fl
Color       
Superior regionsFlocculonodular lobe

SynonymsAbbr.Language
Cerebellar flocculus Eng
FlocculusFlEng

SubregionsSide
Caudal flocculusleft
Caudalmost part of the flocculusleft
Central floccular zoneleft
Dorsal flocculusleft
Dorsomedial part of the flocculusleft
Floccular apexleft
Intermediate zone of the flocculusleft
Medial part of the flocculusleft
Rostral part of the flocculusleft
Ventral flocculusleft
Rostrocentral flocculusleft
Ventrolateral flocculusleft
Rostromedial flocculusleft
Rostrodorsal flocculusleft
Dorsolateral flocculusleft
Rostroventral flocculusleft
Caudolateral flocculusleft
Dorsocentral flocculusleft
Caudodorsomedial flocculusleft
Rostroventromedial flocculusleft
Rostrodorsomedial flocculusleft
Flocculular compartment IIaleft
Flocculular compartment IVleft
Flocculular compartment Ibleft
Flocculular compartment Idleft

Output to

NameSideAbbr.WeightDetails
Paraflocculus ventral partipsiPFlv-0.5
Cerebellar lobule 9ipsiCERL92
Cerebellar lobule 10ipsiCERL102
Cerebellar lobule 10 lateral partipsiCERL10L-0.5
Lateral cerebellar nucleusipsiCERL2
FlocculusipsiFl-0.5
Medial part of the flocculusipsiFlM2
Pontine nucleiipsiPn1
Nucleus YipsiY2
Medial vestibular nucleus rostral halfipsiMVeRh2
Paraflocculus ventral partcontraPFlv-0.5
Cerebellar lobule 9contraCERL91
Cerebellar lobule 10contraCERL101
Cerebellar lobule 10 lateral partcontraCERL10L0
FlocculuscontraFl-0.5
Medial part of the flocculuscontraFlM1
Pontine nucleicontraPn0.5
Lateral rectus muscleipsiMuscEEyeLR-0.5
Medial rectus muscleipsiMuscEEyeMR-0.5
Lateral rectus musclecontraMuscEEyeLR-0.5
Medial rectus musclecontraMuscEEyeMR-0.5

Input from

NameSideAbbr.WeightDetails
Central gray lateral ventral partipsiCGVD2
Medial longitudinal fasciculusipsimlf3
Neurons in the medial longitudinal fasciculeipsiNmlf1
Intermediate part of the interstitial nucleus of medial longitudinal fasciculusipsiIMLFim-0.5
Nucleus of DarkschewitschipsiDk2
Medial accessory oculomotor nucleusipsiMA3-0.5
Medial terminal nucleus of the accessory optic systemipsiOMCmt0
Periaqueductal grayipsiPAG-0.5
Dorsolateral periaqueductal grayipsiDLPAG-0.5
Dorsolateral pontine nucleusipsiDLPn3
Medial pontine nucleusipsiMPoN3
Superior colliculus deep layersipsiSCd-0.5
Substantia nigra compact partipsiSNC0
Substantia nigra reticular partipsiSNR0
Ventral tegmental area A10ipsiVTA-0.5
Parabrachial pigmented nucleusipsiPBP0
Paranigral nucleusipsiPN0
Ventrolateral tegmental areaipsiVLTg-0.5
Visual tegmental relay zoneipsiViTRZo0
Edinger Westphal nucleusipsiEW1
Interstitial nucleus of CajalipsiInC-0.5
Cerebellar lobule 9ipsiCERL9-0.5
Cerebellar lobule 10ipsiCERL10-0.5
Dorsolateral humpipsiCERcndl1
Dorsolateral hump ventral partipsiCERcndlV1
Interposed cerebellar nucleiipsiICN-0.5
Interposed cerebellar nuclei caudomedial partipsiICNcm1
Interposed cerebellar nuclei rostrolateral partipsiICNRL1
Interposed cerebellar nuclei ventrolateral partipsiICNVL1
Lateral cerebellar nucleusipsiCERL-0.5
Lateral cerebellar nucleus intermediate levelipsiCERLim0
Lateral cerebellar nucleus medial partipsiCERLM1
Medial cerebellar nucleusipsiMed-0.5
Medial cerebellar nucleus lateral partipsiMedL1
FlocculusipsiFl-0.5
PonsipsiP-0.5
Lateral pontine nucleusipsiLPn3
Locus coeruleusipsiLC2
Small fusiform neurons of the caudal portion of the locus coeruleusipsiLCcasFn1
Posterior portion of the pontine periventricular grayipsiPPGP1
Reticulotegmental nucleus of the ponsipsiRtTg1
Central part of the reticulotegmental nucleus of the ponsipsiRtTgC3
Dorsomedial perimeter of the central part of the reticulotegmental nucleus of the ponsipsiRtTgCDM3
Medial portion of the central part of the reticulotegmental nucleus of the ponsipsiRtTgCMe3
Pericentral portion of the nucleus reticularis tegmenti pontisipsiRtTgPCe3
Pontine nucleiipsiPn0.5
Pontine nucleus medial partipsiBPNm2
Prepositus nucleusipsiPr4
Deep mesencephalic nucleusipsiDpMe-0.5
Pontine reticular nucleusipsiPRN2
Parabrachial nucleusipsiPB0.5
Lateral parabrachial nucleusipsiLPB-0.5
Lateral reticular nucleusipsiLRt2
Rostral part of the magnocellular lateral reticular nucleusipsiLRtMCR0
Dorsolateral part of the caudal part of the magnocellular lateral reticular nucleusipsiLRtMCCDL0
Caudolateral magnocellular lateral reticular nucleusipsiLRtMCCL0
Caudoventral magnocellular lateral reticular nucleusipsiLRtMCCV0
Lateral reticular nucleus subtrigeminal partipsiLRtS5-0.5
Linear subdivision of the lateral reticular nucleusipsiLRtLi1
Medullary reticular nucleusipsiMdD1
Supragenual nucleusipsiSGe3
Small neurons of the ambiguus nucleusipsiAmbsn-0.5
Area postremaipsiAP1
Abducens nucleusipsi62
Dorsal zone of the cranial half of the abducens nucleusipsi6CD3
Dorsomedial zone of the cranial half of the abducens nucleusipsi6CDM3
Abducens nucleus dorsal partipsi6D-0.5
Abducens nucleus dorsomedial partipsi6dm-0.5
Genu of the facial nerveipsig72
Nuclei of the trigeminal complexipsiN5S1
Spinal trigeminal nucleusipsiSp5nc1
Spinal trigeminal nucleus caudal partipsiSp5C0.5
Spinal trigeminal nucleus interpolar partipsiSp5I0.5
Ventrolateral to the trigeminal motor nucleusipsi5VLT-0.5
Caudal two-thirds of the dorsal cochlear nucleusipsiDCctd-0.5
Rostral part of the dorsal cochlear nucleusipsiDCr-1
Interstitial nucleus of the vestibulocochlear nerveipsiI81
Spinal vestibular nucleusipsiSpVe1
Ventrolateral border of the descending vestibular nucleusipsiSpVeVLb3
Nucleus YipsiY3
Subnucleus XipsiVncX3
Vestibular nuclei ventromedial partipsiVncVM1
Superior vestibular nucleusipsiSuVe3
Rostral vestibular complexipsiVncR-0.5
Medial vestibular nucleusipsiMVe3
Medial vestibular nucleus caudal halfipsiMVePch1
Medial vestibular nucleus ventral partipsiMVeV1
Medial vestibular nucleus ventromedial partipsiMVevm1
Lateral vestibular nucleusipsiLVe1
Inferior vestibular nucleusipsiIVN-0.5
Vestibular ganglionipsi8VG1
X cell group of the vestibular complexipsiXVES1
Z cell group of the vestibular complexipsiZVES1
Nucleus intercalatusipsiNic1
Raphe nucleiipsiRAN0.5
Dorsal raphe nucleusipsiDR2
Pontine raphe nucleusipsiPnR3
Raphe magnus nucleusipsiRMg3
Raphe pallidus nucleusipsiRPa1
Cuneate nucleusipsiCu0.5
External cuneate nucleusipsiECu0.5
Nucleus of RolleripsiRo3
Nucleus XipsiX-0.5
Nucleus ZipsiZ1
Inferior oliveipsiIO3
Inferior olive cap of Kooy of the medial nucleusipsiIOK-0.5
Caudal part of the dorsal cap of KooyipsiCDC-0.5
Caudal two thirds of the inferior olive cap of Kooy of the medial nucleusipsiIOKctT3
Rostral dorsal cap of Kooy of the medial nucleusipsiIOKRD-0.5
Inferior olive medial nucleus rostral partipsiIOMr-0.5
Rostral part of the rostral inferior olive medial nucleusipsiIOMrr-0.5
Inferior olive beta subnucleusipsiIOBe-0.5
Inferior olive subnucleus C of medial nucleusipsiIOC-0.5
Inferior olive ventrolateral protrusionipsiIOVL-0.5
Central part of the inferior olive ventrolateral outgrowthipsiIOVLc-0.5
Medial aspect of ventrolateral outgrowthipsiIOVLm-1
Middle part of the inferior olive ventrolateral protrusion apexipsiIOVLami-0.5
Rostral part of the ventrolateral outgrowthipsiIOVLR-0.5
Inferior olive dorsomedial cell columnipsiIOdmc3
Dorsal paragigantocellular nucleusipsiDPGi1
Retrofacial nucleusipsiRFN-0.5
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA1
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area perifornical partipsiPFx2
Medial division of the hypothalamusipsiMdH1
Anterior hypothalamic areaipsiAHA1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Dorsomedial hypothalamic nucleus dorsomedial partipsiDMDM2
Posterior hypothalamic areaipsiPHA2
Arcuate nucleusipsiArc1
Central medial thalamic nucleusipsiCM-0.5
Centrolateral thalamic nucleusipsiCL-0.5
Paraventricular thalamic nucleus anterior partipsiPVA-0.5
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Ventral posteromedial thalamic nucleusipsiVPM-0.5
Posterior groupipsiPTG-0.5
Tuber cinereum areaipsiTC1
Lateral reticular tractipsilrt1
Ventral part of the medial terminal nucleus of the accessory optic tractipsiMTV0
Dorsal part of the medial terminal nucleus of the accessory optic tractipsiMTD0
Basolateral amygdaloid nucleusipsiBL1
Bed nucleus of the stria terminalisipsiBST-0.5
Central amygdaloid nucleus lateral divisionipsiCeL1
Central amygdaloid nucleus medial divisionipsiCeM1
Posterolateral cortical nucleusipsiPLCo1
Medial amygdaloid nucleusipsiMe1
Medial amygdaloid nucleus anterodorsal partipsiMeAD1
Medial amygdaloid nucleus posterodorsal partipsiMePD1
Field CA1 of hippocampusipsiCA11
Field CA2 of hippocampusipsiCA21
Entorhinal cortexipsiEnt-0.5
Piriform cortexipsiPir-0.5
Cingulate cortexipsiCg-0.5
Insular cortexipsiICX-0.5
Perirhinal cortexipsiA35-0.5
Motoric regionsipsiM1
Primary somatosensory cortex forelimb regionipsiS1FL1
Primary somatosensory cortex hindlimb regionipsiS1HL1
Orbital cortexipsiOrC1
Interpeduncular nucleusipsiIP-0.5
Lateral septal nucleus dorsal partipsiLSD1
Lateral septal nucleus intermediate partipsiLSI1
Ventral medial septumipsiVMSe1
Spinal cord layer 5 C1ipsiSCL5C1-0.5
Spinal cord layer 6 C1ipsiSCL6C1-0.5
Spinal cord layer 7 C1ipsiSCL7C1-0.5
Spinal cord layer 5 C2ipsiSCL5C2-0.5
Spinal cord layer 6 C2ipsiSCL6C2-0.5
Spinal cord layer 7 C2ipsiSCL7C2-0.5
Spinal cord layer 5 C3ipsiSCL5C3-0.5
Spinal cord layer 6 C3ipsiSCL6C3-0.5
Spinal cord layer 7 C3ipsiSCL7C3-0.5
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Spinal cord layer 6 C4ipsiSCL6C4-0.5
Spinal cord layer 7 C4ipsiSCL7C4-0.5
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Spinal cord layer 6 C5ipsiSCL6C5-0.5
Spinal cord layer 7 C5ipsiSCL7C5-0.5
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 6 C6ipsiSCL6C6-0.5
Spinal cord layer 7 C6ipsiSCL7C6-0.5
Spinal cord layer 5 C7ipsiSCL5C7-0.5
Spinal cord layer 6 C7ipsiSCL6C7-0.5
Spinal cord layer 7 C7ipsiSCL7C7-0.5
Spinal cord layer 5 C8ipsiSCL5C8-0.5
Spinal cord layer 6 C8ipsiSCL6C8-0.5
Spinal cord layer 7 C8ipsiSCL7C8-0.5
Medial longitudinal fasciculuscontramlf3
Neurons in the medial longitudinal fasciculecontraNmlf2
Intermediate part of the interstitial nucleus of medial longitudinal fasciculuscontraIMLFim-0.5
Nucleus of DarkschewitschcontraDk-0.5
Medial terminal nucleus of the accessory optic systemcontraOMCmt0
Periaqueductal graycontraPAG-0.5
Dorsolateral periaqueductal graycontraDLPAG-0.5
Dorsolateral pontine nucleuscontraDLPn2.5
Medial pontine nucleuscontraMPoN2.5
Substantia nigra compact partcontraSNC-0.5
Cerebellar lobule 9contraCERL9-0.5
Cerebellar lobule 10contraCERL10-0.5
FlocculuscontraFl-0.5
PonscontraP-0.5
Lateral pontine nucleuscontraLPn2.5
Locus coeruleuscontraLC0.5
Small fusiform neurons of the caudal portion of the locus coeruleuscontraLCcasFn1
Posterior portion of the pontine periventricular graycontraPPGP1
Reticulotegmental nucleus of the ponscontraRtTg1
Central part of the reticulotegmental nucleus of the ponscontraRtTgC2.5
Dorsomedial perimeter of the central part of the reticulotegmental nucleus of the ponscontraRtTgCDM2.5
Medial portion of the central part of the reticulotegmental nucleus of the ponscontraRtTgCMe2.5
Pericentral portion of the nucleus reticularis tegmenti pontiscontraRtTgPCe2.5
Pontine nucleicontraPn1
Prepositus nucleuscontraPr4
Pontine reticular nucleuscontraPRN0.5
Parabrachial nucleuscontraPB0.5
Lateral reticular nucleuscontraLRt2
Lateral reticular nucleus subtrigeminal partcontraLRtS5-0.5
Linear subdivision of the lateral reticular nucleuscontraLRtLi2
Medullary reticular nucleuscontraMdD1
Supragenual nucleuscontraSGe3
Small neurons of the ambiguus nucleuscontraAmbsn-0.5
Abducens nucleuscontra62
Dorsal zone of the cranial half of the abducens nucleuscontra6CD3
Dorsomedial zone of the cranial half of the abducens nucleuscontra6CDM3
Abducens nucleus dorsal partcontra6D-0.5
Abducens nucleus dorsomedial partcontra6dm-0.5
Genu of the facial nervecontrag72
Nuclei of the trigeminal complexcontraN5S2
Ventrolateral to the trigeminal motor nucleuscontra5VLT-0.5
Spinal vestibular nucleuscontraSpVe1
Ventrolateral border of the descending vestibular nucleuscontraSpVeVLb2
Superior vestibular nucleuscontraSuVe3
Rostral vestibular complexcontraVncR-0.5
Medial vestibular nucleuscontraMVe3
Medial vestibular nucleus caudal halfcontraMVePch-1
Medial vestibular nucleus ventral partcontraMVeV0.5
Medial vestibular nucleus ventromedial partcontraMVevm1
Lateral vestibular nucleuscontraLVe1
Vestibular ganglioncontra8VG0
X cell group of the vestibular complexcontraXVES-0.5
Z cell group of the vestibular complexcontraZVES-0.5
Nucleus intercalatuscontraNic1
Nucleus of the solitary tract commissural partcontraSolC-0.5
Raphe nucleicontraRAN0.5
Pontine raphe nucleuscontraPnR3
Raphe magnus nucleuscontraRMg3
Cuneate nucleuscontraCu0.5
External cuneate nucleuscontraECu0.5
Nucleus of RollercontraRo3
Nucleus ZcontraZ1
Olivary nucleuscontraON3
Inferior olivecontraIO3
Inferior olive cap of Kooy of the medial nucleuscontraIOK3
Inferior olive caudal partcontraIOCa-0.5
Inferior olive dorsal nucleuscontraIOD3
Inferior olive medial nucleuscontraIOM3
Inferior olive subnucleus B of medial nucleuscontraIOB-0.5
Inferior olive medial nucleus caudal partcontraIOMc-0.5
Inferior olive medial nucleus intermediate partcontraIOMim-0.5
Inferior olive medial nucleus rostral partcontraIOMr1
Ventral protion of the inferior olive medial nucleuscontraIOMVe2
Inferior olive beta subnucleuscontraIOBe3
Inferior olive subnucleus C of medial nucleuscontraIOC-0.5
Inferior olive ventrolateral protrusioncontraIOVL2
Inferior olive principal nucleuscontraIOPr3
Rostral part of the lateral bend of the principal olivecontraIOPrLbR1
Inferior olive dorsomedial cell columncontraIOdmc3
Ventrolateral inferior olive principal nucleuscontraIOPrVL2
Retrofacial nucleuscontraRFN-0.5
Zona incertacontraZI-0.5
Nucleus of the optic tractcontraOT-0.5
HabenulacontraHAB1
Lateral reticular tractcontralrt1
Lateral terminal nucleus of the accessory optic tractcontraLTeN-0.5
Medial terminal nucleus of the accessory optic tractcontraMT-0.5
Interpeduncular nucleuscontraIP-0.5
Central cervical nucleuscontraMESccn-0.5
Spinal cord layer 5 C1contraSCL5C1-0.5
Spinal cord layer 6 C1contraSCL6C1-0.5
Spinal cord layer 7 C1contraSCL7C1-0.5
Spinal cord layer 5 C2contraSCL5C2-0.5
Spinal cord layer 6 C2contraSCL6C2-0.5
Spinal cord layer 7 C2contraSCL7C2-0.5
Spinal cord layer 5 C3contraSCL5C3-0.5
Spinal cord layer 6 C3contraSCL6C3-0.5
Spinal cord layer 7 C3contraSCL7C3-0.5
Spinal cord layer 5 C4contraSCL5C4-0.5
Spinal cord layer 6 C4contraSCL6C4-0.5
Spinal cord layer 7 C4contraSCL7C4-0.5
Spinal cord layer 5 C5contraSCL5C5-0.5
Spinal cord layer 6 C5contraSCL6C5-0.5
Spinal cord layer 7 C5contraSCL7C5-0.5
Spinal cord layer 5 C6contraSCL5C6-0.5
Spinal cord layer 6 C6contraSCL6C6-0.5
Spinal cord layer 7 C6contraSCL7C6-0.5
Spinal cord layer 5 C7contraSCL5C7-0.5
Spinal cord layer 6 C7contraSCL6C7-0.5
Spinal cord layer 7 C7contraSCL7C7-0.5
Spinal cord layer 5 C8contraSCL5C8-0.5
Spinal cord layer 6 C8contraSCL6C8-0.5
Spinal cord layer 7 C8contraSCL7C8-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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