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Rat connectome



Interposed cerebellar nuclei left


Abbreviation
ICN
Color       
Superior regionsDeep cerebellar nuclei

SynonymsAbbr.Language
 IP 
Interposed cerebellar nucleiICNEng
Nucleus interpositus  
Interpositus  
Interpositus nucleus  
Interposed cerebellar nucleusIntEng
Interpositus complex Eng
Nucleus interpositusNIEng
Nuclei interpositalis Eng
Interposed cerebellar nucleus  
Interpolar cerbellar nucleus Eng
Interpositus nucleiINEng
Interpositus nuclear complex  

SubregionsSide
Anterior interposed nucleusleft
Interposed cerebellar nuclei caudal partleft
Interposed cerebellar nuclei caudomedial partleft
Interposed cerebellar nuclei central partleft
Interposed cerebellar nuclei dorsomedial partleft
Interposed cerebellar nuclei medial partleft
Interposed cerebellar nuclei rostral partleft
Interposed cerebellar nuclei rostrolateral partleft
Interposed cerebellar nuclei ventral partleft
Interposed cerebellar nuclei ventrolateral partleft
Interposed cerebellar nucleus dorsolateral humpleft
Interposed cerebellar nucleus dorsomedial crestleft
Interposed cerebellar nucleus intermediate partleft
Interposed cerebellar nucleus posterior parvicellular partleft
Lateral interposed cerebellar nucleusleft
Posterior interposed nucleusleft
Rostrocaudal extent of the interposed complexleft
Transition zone between anterior and posterior interposed cerebellar nucleileft
Parvicellular interposed nucleusleft

Output to

NameSideAbbr.WeightDetails
Nuclei of the lateral lemniscusipsiNLL0.5
Red nucleusipsiR3
Red nucleus magnocellular partipsiRMC1
Dorsomedial part of the red nucleus magnocellular partipsiRMCDM3
Red nucleus magnocellular part caudal regionipsiRMCC3
Ventrolateral part of the red nucleus magnocellular partipsiRMCVL3
Red nucleus parvicellular partipsiROC2
Central tegmental field dorsal partipsiTGACd0
Midbrain extrapyramidal areaipsiMEA0.5
Substantia nigra compact partipsiSNC1
Substantia nigra lateral partipsiSNL1
Substantia nigra reticular partipsiSNR1
Ventral tegmental area A10ipsiVTA-0.5
Ventral tegmental area A10 lateral partipsiVTAL3
Interfascicular nucleusipsiIF1
Caudal linear nucleus of the rapheipsiCLi1
Peripeduncular nucleusipsiPP0
Retrorubral nucleusipsiRR1
Laterodorsal tegmental nucleusipsiLDTg1
Dorsal tegmental nucleusipsiDTg0.5
Pedunculopontine tegmental nucleusipsiPPTg2
Cerebellar lobule 4ipsiCERL4-0.5
Cerebellar lobule 5ipsiCERL5-0.5
Cerebellar lobule 8ipsiCERL8-0.5
Cerebellar lobule 9ipsiCERL9-0.5
Cerebellar lobule 10ipsiCERL10-0.5
Cerebellar lobule 6ipsiCERL6-0.5
A-zone of the cerebellar cortexipsiCeZA3
C1-zone of the cerebellar cortexipsiCeZC13
C2-zone of the cerebral cortexipsiCeZC23
Cerebellar cortex D zonesipsiCeD3
Anterior interposed nucleusipsiAIN1
Posterior interposed nucleusipsiCERpin1
FlocculusipsiFl-0.5
Superior cerebellar peduncleipsisucep-2
Decussatio of the superior cerebellar peduncleipsixscp-2
Locus coeruleusipsiLC1
Pontine grayipsiPG3
Pontine tegmental fieldipsiPTF0
Reticulotegmental nucleus of the ponsipsiRtTg2
Pontine nucleiipsiPn1
Mesencephalic reticular formationipsiMRF1
Parabrachial nucleusipsiPB1
Lateral parabrachial nucleusipsiLPB1
Medullary reticular nucleus dorsal partipsiMdDd4
F cell group of the vestibular complexipsiFVe1
Group 1 of Brodal and PompeianoipsiVESg1BP1
Vestibular nucleiipsiVnc-0.5
Superior vestibular nucleusipsiSuVe-0.5
Peripheral part of the superior vestibular nucleusipsiPSuVe2
Medial vestibular nucleusipsiMVe-0.5
Medial vestibular nucleus rostral caudal extentipsiMVeRC3
Lateral vestibular nucleusipsiLVe-0.5
Lateral vestibular nucleus dorsoventral extentipsiLVedv3
Inferior vestibular nucleusipsiIVN-0.5
Inferior vestibular nucleus caudal thirdipsiIVNct-0.5
X cell group of the vestibular complexipsiXVES1
Rostral linear nucleus of the rapheipsiRLi1
Median raphe nucleusipsiMnR3
Olivary nucleusipsiON-0.5
Inferior oliveipsiIO2
Inferior olive dorsal nucleusipsiIOD1
Inferior olive dorsal nucleus lateral partipsiIODL0
Lateral part inferior olive dorsal nucleus near its rostral poleipsiIODLnirP1
Inferior olive dorsal nucleus medial partipsiIODm1
Lateral part of the rostral inferior olive dorsal nucleusipsiIODRL-0.5
Inferior olive medial nucleusipsiIOM2
Inferior olive medial nucleus lateral partipsiIOML0
Inferior olive medial nucleus rostral partipsiIOMr-0.5
Inferior olive principal nucleusipsiIOPr1
Inferior olive principal nucleus dorsal leafipsiIOPrdl1
Inferior olive principal nucleus lateral bendipsiIOPrLb1
Inferior olive principal nucleus rostral partipsiIOPrR0
Inferior olive principal nucleus ventral leafipsiIOPrvl1
Inferior olive dorsomedial cell columnipsiIOdmc1
Caudal half of the inferior olive dorsomedial cell columnipsiIOdmcch1
Ventral lamella of the principal olivary nucleusipsiVLPON2
Lateral preoptic area medial partipsiLPOm0
Medial preoptic areaipsiMPA0
Dorsomedial hypothalamic nucleusipsiDMHy0
Lateral hypothalamic area medial part [Preoptic anterior region]ipsiLHAmpar0
Anterior hypothalamic areaipsiAHA0
Ventromedial hypothalamic nucleusipsiVMH0
Dorsomedial paraventricular hypothalamic nucleusipsiPaDM0
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP0
Paraventricular hypothalamic nucleusipsiPa-1
Supraoptic nucleus [Supraoptic region]ipsiSO0
A8 dopamine cells retrorubral groupipsiRRF1
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL2
Parafascicular thalamic nucleusipsiPF2
Parafascicular thalamic nucleus prerubral partipsiPFPR1
Ventrolateral thalamic nucleusipsiVL2
Ventrolateral thalamic nucleus rostral partipsiVLRo2
Ventral posterolateral thalamic nucleus anterior partipsiVPLA1
Ventral posterolateral thalamic nucleus rostral partipsiVPLro2
Ventral posteromedial thalamic nucleus anterior partipsiVPMA1
Ventromedial thalamic nucleusipsiVM2
Lateral posterior thalamic nucleusipsiLP2
Ventral thalamusipsiVNT1
Zona incertaipsiZI2
Nucleus of the fields of ForelipsiF2
Zona incerta caudal partipsiZIC1
Zona incerta ventral partipsiZIV1
Anterior pretectal nucleusipsiAPT2
Bed nucleus of the stria terminalisipsiBST0
Subthalamic nucleusipsiSTh1
Top of 3d ventricleipsiT3V0
Cervical segment 1ipsiCS12
Central cervical nucleus C1ipsiCeCvC12
Ventral horn C1ipsiVHC12
Cervical segment 2ipsiCS22
Central cervical nucleus C2ipsiCeCvC22
Ventral horn C2ipsiVHC22
Cervical segment 3ipsiCS31
Central cervical nucleus C3ipsiCeCvC32
Ventral horn C3ipsiVHC32
Cervical segment 4ipsiCS41
Central cervical nucleus C4ipsiCeCvC42
Ventral horn C4ipsiVHC42
Cervical segment 5ipsiCS51
Central graycontraCG3
Central gray lateral partcontraCGL2
Central gray mesencephalic part intercollicular levelcontraCGMint-0.5
Nuclei of the lateral lemniscuscontraNLL0.5
Nucleus of DarkschewitschcontraDk2
Periaqueductal graycontraPAG1.5
Red nucleuscontraR3
Red nucleus magnocellular partcontraRMC3
Red nucleus magnocellular part caudal regioncontraRMCC1
Red nucleus parvicellular partcontraROC3
TectumcontraTEC1
Superior colliculuscontraSC1.5
Central tegmental field dorsal partcontraTGACd0
Midbrain extrapyramidal areacontraMEA0
Ventral peduncular pontine nucleuscontraVPPn-0.5
Ventral peduncular region of the ventral pontine nucleuscontraVpVBPNv1
Ventral tegmental decussationcontravtgx3
Laterodorsal tegmental nucleuscontraLDTg1
Midbrain tegmentumcontraTGmi1
Dorsomedial pontine tegmentumcontraTGADM1
Dorsal tegmental nucleuscontraDTg0.5
Pedunculopontine tegmental nucleuscontraPPTg2
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC2
Superior cerebellar pedunclecontrasucep-2
Neuropil surrounding the supperior cerebellar pedunclecontranscepe-0.5
PonscontraP2
Midrostrocaudal portion of the basilar ponscontraBaPmrc-0.5
Locus coeruleuscontraLC0.5
Basilar part of the dorsal peduncular zonecontraDPeZB-0.5
Pontine graycontraPG2
Pontine tegmental fieldcontraPTF0
Reticulotegmental nucleus of the ponscontraRtTg-0.5
Pontine nucleicontraPn3
Pontine nuclei caudal partcontraBPNc0.5
Dorsal peduncular pontine nucleicontraDpBPn-0.5
Pontine nuclei lateral partcontraBPNL2
Pontine nuclei rostral partcontraBPNr1
Major subdivision of the rostral four fifths of the pontine nucleicontraBPNrFF-0.5
Pontine nucleus medial partcontraBPNm3
Pontine nucleus ventral partcontraBPNv3
Dorsomedial region of the ventral pontine nucleuscontraDmBPNv1
Middle region of the ventral part of the pontine nucleuscontraMiBPNv1
Ventral region of the ventral part of the pontine nucleuscontraVBPNv1
Prepositus nucleuscontraPr1
Reticular systemcontraRF3
Mesencephalic reticular formationcontraMRF3
Parabrachial nucleuscontraPB0
Lateral parabrachial nucleuscontraLPB0.5
Gigantocellular reticular nucleuscontraGi1
Medullary reticular nucleus dorsal partcontraMdDd0.5
Vestibular nucleicontraVnc-0.5
Median raphe nucleuscontraMnR2
Inferior olivecontraIO4
Inferior olive dorsal nucleuscontraIOD3
Inferior olive dorsal nucleus lateral partcontraIODL0
Lateral part inferior olive dorsal nucleus at the rostral levelcontraIODLR-0.5
Inferior olive dorsal nucleus medial partcontraIODm-0.5
Medial part of the inferior olive dorsal nucleus at the caudal levelcontraIODmc-0.5
Inferior olive dorsal nucleus rostral partcontraIODR-0.5
Medial portion of the inferior olive dorsal nucleus ventral leafcontraIODvLM-0.5
Inferior olive medial nucleuscontraIOM3
Inferior olive medial nucleus lateral partcontraIOML0
Inferior olive ventrolateral protrusioncontraIOVL3
Middle third of the inferior olive medial nucleuscontraIOMmt1
Inferior olive principal nucleuscontraIOPr2
Lateral bend of the caudal principal olivecontraIOPrCLb-0.5
Inferior olive principal nucleus dorsal leafcontraIOPrdl2
Inferior olive principal nucleus lateral bendcontraIOPrLb-0.5
Inferior olive principal nucleus rostral partcontraIOPrR0
Inferior olive principal nucleus ventral leafcontraIOPrvl2
Inferior olive dorsomedial cell columncontraIOdmc-0.5
Caudal half of the inferior olive dorsomedial cell columncontraIOdmcch3
Ventral lamella of the principal olivary nucleuscontraVLPON3
Lateral preoptic area medial partcontraLPOm0
Medial preoptic areacontraMPA0
HypothalamuscontraHYPO-0.5
Dorsomedial hypothalamic nucleuscontraDMHy0
Lateral hypothalamic area medial part [Preoptic anterior region]contraLHAmpar0
Lateral zonecontraLHA-0.5
Anterior hypothalamic areacontraAHA0
Posterior hypothalamic areacontraPHA-0.5
Ventromedial hypothalamic nucleuscontraVMH0
Dorsomedial paraventricular hypothalamic nucleuscontraPaDM0
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]contraPaAP0
Paraventricular hypothalamic nucleuscontraPa-0.5
Supraoptic nucleus [Supraoptic region]contraSO0
A8 dopamine cells retrorubral groupcontraRRF0
ThalamuscontraT3
Central medial thalamic nucleuscontraCM-0.5
Centrolateral thalamic nucleuscontraCL-0.5
Parafascicular thalamic nucleuscontraPF3
Mediodorsal thalamic nucleuscontraMD2
Ventral anterior-lateral complex of the thalamuscontraVAL-0.5
Ventro anterior thalamic nucleuscontraVA2
Ventrolateral thalamic nucleuscontraVL2
Ventrolateral thalamic nucleus lateral partcontraVLLa1
Ventrobasal complexcontraVB1.5
Ventral posterolateral thalamic nucleuscontraVPL1
Ventral posteromedial thalamic nucleuscontraVPM-0.5
Main thalamic relay nucleicontraVBMTRN-0.5
Ventromedial thalamic nucleuscontraVM3
Ventromedial thalamic nucleus lateral partcontraVML1
Lateral posterior thalamic nucleuscontraLP-0.5
Laterodorsal thalamic nucleuscontraLD2
Laterodorsal thalamic nucleus lateral partcontraLDL1
Posterior groupcontraPTG-0.5
Ventral medial nucleus of the thalamuscontraVMT2
Zona incertacontraZI-0.5
Pretectal regioncontraPRT1.5
Anterior pretectal nucleuscontraAPT-0.5
Bed nucleus of the stria terminaliscontraBST0
Basal gangliacontraBG1
Nucleus of the posterior commissurecontraPCom1
Top of 3d ventriclecontraT3V0
Cervical segment 1contraCS13
Cervical segment 2contraCS23
Spinal cord layers C2contraSCLC21
Hypoglossal nerveipsi12P1

Input from

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG0
Dorsal periaqueductal gray caudal partipsiDPAGC0
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0
Dorsolateral periaqueductal gray rostral partipsiPAGdlr0
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0
Edinger Westphal nucleusipsiEW-0.5
Cerebellar cortex intermediate part C zonesipsiCeiZC-0.5
C1-zoneipsiC1ZO3
Simple lobule C1 zoneipsiSimC13
Cerebellar lobule 2a zone C1ipsiCERL2aC1-0.5
Cerebellar lobule 2a zone C2ipsiCERL2aC2-0.5
Cerebellar lobule 2a zone C3ipsiCERL2aC3-0.5
Cerebellar lobule 2b zone C1ipsiCERL2bC1-0.5
Cerebellar lobule 2b zone C2ipsiCERL2bC2-0.5
Cerebellar lobule 2b zone C3ipsiCERL2bC3-0.5
Cerebellar lobule 3a zone C1ipsiCERL3aC1-0.5
Cerebellar lobule 3a zone C2ipsiCERL3aC2-0.5
Cerebellar lobule 3a zone C3ipsiCERL3aC3-0.5
Cerebellar lobule 3b zone BipsiCERL3bB3
Cerebellar lobule 3b C zonesipsiCERL3bC3
Cerebellar lobule 3b zone C1ipsiCERL3bC1-0.5
Cerebellar lobule 3b zone C2ipsiCERL3bC2-0.5
Cerebellar lobule 3b zone C3ipsiCERL3bC3-0.5
Cerebellar lobule 1 zone C1ipsiCERL1C1-0.5
Cerebellar lobule 1 zone C2ipsiCERL1C2-0.5
Cerebellar lobule 1 zone C3ipsiCERL1C3-0.5
Cerebellar lobule 4 zone C1ipsiCERL4C1-0.5
Cerebellar lobule 4 zone C2ipsiCERL4C2-0.5
Cerebellar lobule 4 zone C3ipsiCERL4C3-0.5
Cerebellar lobule 5ipsiCERL5-0.5
Cerebellar lobule 5 zone BipsiCERL5B-0.5
Cerebellar lobule 5 zone C1ipsiCERL5C1-0.5
Cerebellar lobule 5 zone C2ipsiCERL5C2-0.5
Cerebellar lobule 5 zone C3ipsiCERL5C3-0.5
Cerebellar lobule 7a zone C1ipsiCERL7aC1-0.5
Cerebellar lobule 7a zone C2ipsiCERL7aC2-0.5
Cerebellar lobule 7a zone C3ipsiCERL7aC3-0.5
Cerebellar lobule 7b zone C1ipsiCERL7bC1-0.5
Cerebellar lobule 7b zone C2ipsiCERL7bC2-0.5
Cerebellar lobule 7b zone C3ipsiCERL7bC3-0.5
Cerebellar lobule 8 zone C1ipsiCERL8C1-0.5
Cerebellar lobule 8 zone C2ipsiCERL8C2-0.5
Cerebellar lobule 8 zone C3ipsiCERL8C3-0.5
Cerebellar lobule 9a zone C1ipsiCERL9aC1-0.5
Cerebellar lobule 9a zone C2ipsiCERL9aC2-0.5
Cerebellar lobule 9a zone C3ipsiCERL9aC3-0.5
Cerebellar lobule 9a zone D0ipsiCERL9aD0-0.5
Cerebellar lobule 9a zone D1ipsiCERL9aD1-0.5
Cerebellar lobule 9a zone D2ipsiCERL9aD2-0.5
Cerebellar lobule 9a zone XipsiCERL9aX-0.5
Cerebellar lobule 9b zone C1ipsiCERL9bC1-0.5
Cerebellar lobule 9b zone C2ipsiCERL9bC2-0.5
Cerebellar lobule 9b zone C3ipsiCERL9bC3-0.5
Cerebellar lobule 9b zone XipsiCERL9bX-0.5
Cerebellar lobule 9c zone C1ipsiCERL9cC1-0.5
Cerebellar lobule 9c zone C2ipsiCERL9cC2-0.5
Cerebellar lobule 9c zone C3ipsiCERL9cC3-0.5
Cerebellar lobule 9c zone XipsiCERL9cX-0.5
Cerebellar lobule 10b zone C1ipsiCERL10bC1-0.5
Cerebellar lobule 10b zone C2ipsiCERL10bC2-0.5
Cerebellar lobule 10b zone C3ipsiCERL10bC3-0.5
Cerebellar lobule 10b zone XipsiCERL10bX-0.5
Cerebellar lobule 10a zone C1ipsiCERL10aC1-0.5
Cerebellar lobule 10a zone C2ipsiCERL10aC2-0.5
Cerebellar lobule 10a zone C3ipsiCERL10aC3-0.5
Cerebellar lobule 10a zone XipsiCERL10aX-0.5
Cerebellar lobule 6ipsiCERL6-0.5
Cerebellar lobule 6a zone C1ipsiCERL6aC1-0.5
Cerebellar lobule 6a zone C2ipsiCERL6aC2-0.5
Cerebellar lobule 6a zone C3ipsiCERL6aC3-0.5
Cerebellar lobule 6b zone C1ipsiCERL6bC1-0.5
Cerebellar lobule 6b zone C2ipsiCERL6bC2-0.5
Cerebellar lobule 6b zone C3ipsiCERL6bC3-0.5
Cerebellar lobule 6c zone C1ipsiCERL6cC1-0.5
Cerebellar lobule 6c zone C2ipsiCERL6cC2-0.5
Cerebellar lobule 6c zone C3ipsiCERL6cC3-0.5
Cerebellar lobule 6d zone C1ipsiCERL6dC1-0.5
Cerebellar lobule 6d zone C2ipsiCERL6dC2-0.5
Cerebellar lobule 6d zone C3ipsiCERL6dC3-0.5
A-zone of the cerebellar cortexipsiCeZA3
Cerebellar cortex B zonesipsiBZCERC1
C1-zone of the cerebellar cortexipsiCeZC13
C2-zone of the cerebral cortexipsiCeZC23
C3-zone of the cerebellar cortexipsiCeZC33
Cerebellar cortex D zonesipsiCeD3
D1-zone of the cerebellar cortexipsiCeZD12
Medial pontine grayipsiMePG-0.5
Reticulotegmental nucleus of the ponsipsiRtTg3
Lateral part of the central pontine gray matteripsiPGcL-0.5
Pontine nucleiipsiPn0.5
Pontine nucleus ventral partipsiBPNv1
Pontine reticular nucleusipsiPRN2
Pontine reticular nucleus central partipsiNRTPc3
Pontine reticular nucleus ventral partipsiPnV3
Pontine reticular nucleus caudal and pericentral partipsiPRNcp3
Pontine reticular nucleus caudal partipsiPNC1
Pontine reticular nucleus pericentral partipsiNRTPp3
Lateral reticular nucleusipsiLRt3
Trigeminal nucleusipsi50
Trigeminal ganglionipsi5Gn-0.5
Mandibular region of the trigeminal ganglion at the level of the entry of the mandibular nerveipsi5GnMaEm-0.5
Caudal area of the ophthalmomaxillary region of the trigeminal ganglionipsi5GnCOM-0.5
Rostral area of the ophthalmomaxillary region of the trigeminal ganglionipsi5GnROM-0.5
Superficial part of the trigeminal ganglionipsi5GnS-0.5
Group 1 of Brodal and PompeianoipsiVESg1BP1
Vestibular nucleiipsiVnc-0.5
Superior vestibular nucleusipsiSuVe1
Peripheral part of the superior vestibular nucleusipsiPSuVe1
Medial vestibular nucleusipsiMVe1
Medial vestibular nucleus rostral caudal extentipsiMVeRC1
Lateral vestibular nucleusipsiLVe1
Inferior olive dorsal nucleus rostral partipsiIODR-0.5
Inferior olive medial nucleus rostral partipsiIOMr-0.5
Inferior olive dorsomedial cell columnipsiIOdmc2
Tuberomammillary nucleusipsiTuM1
Dorsomedial hypothalamic areaipsiDMHyA3
Paraventricular hypothalamic nucleus lateral aspect of the caudal parvocellular divisionipsiPavPoLC3
Zona incertaipsiZI3
Periaqueductal graycontraPAG0.5
Dorsal periaqueductal gray caudal partcontraDPAGC0.5
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0.5
Dorsolateral periaqueductal gray rostral partcontraPAGdlr0.5
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0.5
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0
Red nucleuscontraR3
Ventral tegmental area A10contraVTA2
Cerebellar cortexcontraCERC1
Cerebellar lobule 9acontraUVUa1
Cerebellar lobule 9bcontraUVUb1
Cerebellar lobule 9ccontraUVUc1
Medial pontine graycontraMePG3
Ventral pontine graycontraVPG3
Lateral part of the central pontine gray mattercontraPGcL3
Pontine nucleicontraPn3
Pontine nucleus ventral partcontraBPNv1
Pontine reticular nucleuscontraPRN2
Vestibular nucleicontraVnc-0.5
Inferior olive dorsal nucleuscontraIOD3
Inferior olive medial nucleus rostral partcontraIOMr3
Inferior olive dorsomedial cell columncontraIOdmc2
Tuberomammillary nucleuscontraTuM0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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