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Rat connectome



Spinal cord layer 5 S1 left


Abbreviation
SCL5S1
Color       
Superior regionsDeep dorsal horn S1

SynonymsAbbr.Language
Spinal cord layer 5 S1SCL5S1Eng

SubregionsSide
Spinal cord layer 5 medial part S1left
Spinal cord layer 5 dorsal half S1left
Spinal cord layer 5 ventral part S1left

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC1
Periaqueductal grayipsiPAG-0.5
Dorsal periaqueductal grayipsiDPAG1
Lateral periaqueductal grayipsiLPAG2
Periaqueductal gray dorsal partipsiPAGd0.5
Periaqueductal gray lateroventral partipsiPAGLV0.5
Ventrolateral periaqueductal grayipsiVLPAG2
Inferior colliculusipsiICOL-0.5
Laterodorsal tegmental nucleusipsiLDTg-0.5
Dorsal tegmental nucleus lateral partipsiDLTN-0.5
Posterior lobe of the cerebellumipsiCERCPL1
Ansiform lobule crus 1ipsiCrus11
Simple lobuleipsiSim1
Anterior lobeipsiAnL2
Paravermal region of anterior lobeipsiPVAnL1
Barringtons nucleusipsiBar1
Reticular systemipsiRF1
Medial pontomedullary reticular formationipsiMPomRF-0.5
Pontine reticular nucleus oral partipsiPnO1
Pontine reticular nucleus oral part dorsolateral partipsiPnODL1
Parabrachial nucleusipsiPB-0.5
Lateral parabrachial nucleusipsiLPB-0.5
Lateral parabrachial nucleus lateral partipsiLPBL1
Parabrachial nucleus central lateral partipsiPBCeL0
Parabrachial nucleus dorsolateral partipsiPBDL0
Dorsal part of the middle one third of the parabrachial nucleusipsiPBDmiotD3
Parabrachial nucleus superior lateralipsiPBSL0
Gigantocellular reticular nucleusipsiGi1
Lateral reticular nucleusipsiLRt1
Lateral reticular nucleus lateral partipsiLRtL1
Subnucleus reticularis dorsalisipsiSRD-0.5
Subnucleus reticularis ventralis medullae oblongataeipsiSRV-0.5
Medullary reticular nucleus dorsal partipsiMdDd-0.5
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd1
Ambiguus nucleusipsiAmb0.5
Principal sensory trigeminal nucleus dorsolateral partipsiPr5DL-0.5
Spinal vestibular nucleusipsiSpVe-0.5
Vestibular nucleiipsiVnc1
Nucleus of the solitary tractipsiSol1
Nucleus of the solitary tract caudal partipsiSolca-0.5
Nucleus of the solitary tract lateral partipsiSolL2
Nucleus of the solitary tract medial partipsiSolM2
Raphe pallidus nucleusipsiRPa1
Rostral ventrolateral medullaipsiRVLM1
Cuneate nucleusipsiCu-0.5
Gracile nucleus principal partipsiGr-0.5
Paragigantocellular reticular nucleusipsiPGi1
Rostral part of the ventromedial medulla oblongataipsiRMeObvm1
Medial septal nucleusipsiMS-0.5
HypothalamusipsiHYPO1
Dorsal regionipsiDHR-0.5
Lateral hypothalamic areaipsiLH2
Medial division of the hypothalamusipsiMdH2
Posterior hypothalamic areaipsiPHA1
ThalamusipsiT1
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleusipsiPC2
Ventrolateral thalamic nucleusipsiVL1
Ventrobasal complexipsiVB-0.5
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Ventral posteromedial thalamic nucleusipsiVPM-0.5
Intralaminar nucleiipsiILN2
Lateral posterior thalamic nucleusipsiLP2
Laterodorsal thalamic nucleusipsiLD2
Posterior groupipsiPTG1
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC-0.5
Basal gangliaipsiBG-0.5
Globus pallidusipsiGP-0.5
Ventral pallidumipsiVP-0.5
Accumbens nucleusipsiAc1
Infralimbic cortexipsiIL-0.5
Medial orbital cortexipsiMO-0.5
Septal regionipsiSER1
Lateral septal nucleusipsiLS-0.5
Cervical segment 1ipsiCS13
Lateral cervical nucleus C1ipsiLatCC1-0.5
Ventral horn C1ipsiVHC11
Cervical segment 2ipsiCS23
Lateral cervical nucleus C2ipsiLatCC2-0.5
Ventral horn C2ipsiVHC21
Cervical segment 3ipsiCS33
Lateral cervical nucleus C3ipsiLatCC3-0.5
Ventral horn C3ipsiVHC31
Cervical segment 4ipsiCS43
Lateral cervical nucleus C4ipsiLatCC4-0.5
Cervical segment 5ipsiCS53
Cervical segment 6ipsiCS63
Cervical segment 7ipsiCS73
Cervical segment 8ipsiCS83
Thoracal segment 1ipsiT13
Thoracal segment 2ipsiT23
Thoracal segment 3ipsiT33
Thoracal segment 4ipsiT43
Thoracal segment 5ipsiT53
Thoracal segment 6ipsiT63
Thoracal segment 7ipsiT73
Thoracal segment 8ipsiT83
Thoracal segment 9ipsiT93
Thoracal segment 10ipsiT103
Thoracal segment 11ipsiT113
Thoracal segment 12ipsiT123
Thoracal segment 13ipsiT133
Lumbar segment 1ipsiL13
Lumbar segment 2ipsiL23
Lumbar segment 3ipsiL33
Lumbar segment 4ipsiL43
Lumbar segment 5ipsiL53
Interneuron groups of layer 9 L5ipsiiGL9L5-0.5
Motoneuron groups of layer 9 L5ipsiMGL9L5-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Lumbar segment 6ipsiL63
Interneuron groups of layer 9 L6ipsiiGL9L6-0.5
Motoneuron groups of layer 9 L6ipsiMGL9L6-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Sacral segment 1ipsiSa13
Interneuron groups of layer 9 S1ipsiiGL9S1-0.5
Motoneuron groups of layer 9 S1ipsiMGL9S1-0.5
Sacral segment 2ipsiSa23
Interneuron groups of layer 9 S2ipsiiGL9S2-0.5
Motoneuron groups of layer 9 S2ipsiMGL9S2-0.5
Sacral segment 3ipsiSa33
Interneuron groups of layer 9 S3ipsiiGL9S3-0.5
Motoneuron groups of layer 9 S3ipsiMGL9S3-0.5
Sacral segment 4ipsiSa43
MesencephaloncontraMEC3
Central graycontraCG-0.5
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG2
Dorsal periaqueductal graycontraDPAG3
Lateral periaqueductal graycontraLPAG3
Periaqueductal gray dorsal partcontraPAGd1
Periaqueductal gray laterodorsal partcontraPAGLD1
Periaqueductal gray lateroventral partcontraPAGLV1
Periaqueductal gray medial partcontraPAGm1
Ventrolateral periaqueductal graycontraVLPAG1
Red nucleuscontraR-0.5
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Superior colliculus deep layerscontraSCd-0.5
Tegmental areacontraTGA-0.5
Laterodorsal tegmental nucleuscontraLDTg-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
CerebellumcontraCERE-0.5
Ansiform lobule crus 1contraCrus11
Simple lobulecontraSim1
Anterior lobecontraAnL1
Paravermal region of anterior lobecontraPVAnL1
Barringtons nucleuscontraBar0.5
Reticular systemcontraRF3
Pontine reticular nucleus oral partcontraPnO3
Pontine reticular nucleus oral part dorsolateral partcontraPnODL0.5
Cuneiforme nucleuscontraCnF-0.5
Parabrachial nucleuscontraPB-0.5
Lateral parabrachial nucleuscontraLPB-0.5
Lateral parabrachial nucleus internal partcontraLPBI-0.5
Lateral parabrachial nucleus lateral partcontraLPBL1
Parabrachial nucleus central lateral partcontraPBCeL0
Parabrachial nucleus dorsolateral partcontraPBDL0
Parabrachial nucleus superior lateralcontraPBSL0
Gigantocellular reticular nucleuscontraGi3
Gigantocellular reticular nucleus lateral partcontraGirL3
Lateral reticular nucleuscontraLRt3
Lateral reticular nucleus lateral partcontraLRtL2
Subnucleus reticularis dorsaliscontraSRD-0.5
Subnucleus reticularis ventralis medullae oblongataecontraSRV-0.5
Principal sensory trigeminal nucleus dorsolateral partcontraPr5DL-0.5
Spinal vestibular nucleuscontraSpVe-0.5
Vestibular nucleicontraVnc3
Nucleus of the solitary tractcontraSol3
Nucleus of the solitary tract lateral partcontraSolL2
Nucleus of the solitary tract medial partcontraSolM2
Raphe pallidus nucleuscontraRPa1
Caudal ventrolateral medullacontraCVLM1
Cuneate nucleuscontraCu-0.5
Paragigantocellular reticular nucleuscontraPGi3
Lateral paragigantocellular nucleuscontraLPGi-0.5
Paragigantocellular reticular nucleus medial partcontraPGiM-0.5
Rostral part of the ventromedial medulla oblongatacontraRMeObvm1
Medial septal nucleuscontraMS-0.5
HypothalamuscontraHYPO3
Lateral hypothalamic areacontraLH3
Medial division of the hypothalamuscontraMdH3
Posterior hypothalamic areacontraPHA1
ThalamuscontraT3
Central medial thalamic nucleuscontraCM2.5
Centrolateral thalamic nucleuscontraCL2.5
Paracentral thalamic nucleuscontraPC2.5
Posterior thalamic nuclear groupcontraPo2
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT2
Mediodorsal thalamic nucleuscontraMD2
Ventrolateral thalamic nucleuscontraVL3
Ventrobasal complexcontraVB-0.5
Ventral posterolateral thalamic nucleuscontraVPL-0.5
Ventral posteromedial thalamic nucleuscontraVPM-0.5
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Intralaminar nucleicontraILN2.5
Lateral posterior thalamic nucleuscontraLP2.5
Laterodorsal thalamic nucleuscontraLD2.5
Posterior groupcontraPTG3
Pretectal regioncontraPRT-0.5
Anterior pretectal nucleuscontraAPT-0.5
Posterior pretectal nucleuscontraPPT-0.5
Lateral funiculuscontralf-2
Spinothalamic tractcontrastt-2
Amygdaloid complexcontraAC-0.5
Globus palliduscontraGP-0.5
Ventral pallidumcontraVP-0.5
Accumbens nucleuscontraAc2
Infralimbic cortexcontraIL-0.5
Medial orbital cortexcontraMO-0.5
Septal regioncontraSER2
Lateral septal nucleuscontraLS-0.5
Ventral horn C1contraVHC11
Ventral horn C2contraVHC21
Ventral horn C3contraVHC31
Pelvic ganglionipsiAutoPeG-0.5
CoripsiOrgsCor-0.5
StomachipsiOrgsStomS-1
Bulbocavernosus muscleipsiMuscBCV-10
Bulbospongiosus muscleipsiMuscbsp2
Ischiocavernosus muscleipsiMuscicav-10
Musculus levator aniipsiMuscLevAn-0.5
Musculus abductor caudae dorsalisipsiMuscAbdCaDo-10
Bulbospongiosus musclecontraMuscbsp2
Musculus abductor caudae dorsaliscontraMuscAbdCaDo-10

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Red nucleusipsiR1
A5 noradrenaline cellsipsiA52
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca0.5
Ventrolateral reticular formationipsiVLRF-0.5
Mesencephalic reticular formationipsiMRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Medullary reticular nucleus dorsal partipsiMdDd-0.5
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Lateral paragigantocellular nucleusipsiLPGi-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm0
Lateral hypothalamic areaipsiLH1
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag0
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo1
A11 dopamine cellsipsiA11-0.5
Zona incertaipsiZI-0.5
Zona incerta rostromedial partipsiZIrm0
Somatomotoric regionsipsiSMR-0.5
Somatomotoric regions layer 5ipsiSMRL51
Area X C4ipsiSCL10C4-0.5
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Spinal cord layer 4 C4ipsiSCL4C4-0.5
Spinal cord layer 7 C4ipsiSCL7C4-0.5
Spinal cord layer 8 C4ipsiSCL8C4-0.5
Area X C5ipsiSCL10C5-0.5
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Spinal cord layer 4 C5ipsiSCL4C5-0.5
Spinal cord layer 7 C5ipsiSCL7C5-0.5
Spinal cord layer 8 C5ipsiSCL8C5-0.5
Area X C6ipsiSCL10C6-0.5
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 4 C6ipsiSCL4C6-0.5
Spinal cord layer 7 C6ipsiSCL7C6-0.5
Spinal cord layer 8 C6ipsiSCL8C6-0.5
Dorsal root ganglion L1ipsiDRGL10
Dorsal root ganglion L2ipsiDRGL20
Spinal cord layer 3 L2ipsiSCL3L23
Spinal cord layer 4 L2ipsiSCL4L23
Spinal cord layer 1 L2ipsiSCL1L23
Spinal cord layer 2 L2ipsiSCL2L23
Dorsal root ganglion L3ipsiDRGL30
Spinal cord layer 3 L3ipsiSCL3L33
Spinal cord layer 4 L3ipsiSCL4L33
Spinal cord layer 1 L3ipsiSCL1L33
Spinal cord layer 2 L3ipsiSCL2L33
Dorsal root ganglion L4ipsiDRGL4-0.5
Spinal cord layer 3 L4ipsiSCL3L43
Spinal cord layer 4 L4ipsiSCL4L43
Spinal cord layer 1 L4ipsiSCL1L43
Spinal cord layer 2 L4ipsiSCL2L43
Dorsal root ganglion L5ipsiDRGL52
Dorsal root ganglion L6ipsiDRGL61
Dorsal root ganglion S1ipsiDRGS12
Red nucleuscontraR0.5
Red nucleus magnocellular part caudal regioncontraRMCC-0.5
Intermediate gray layer of the superior colliculuscontraInG-0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Mesencephalic reticular formationcontraMRF-0.5
Gigantocellular reticular nucleuscontraGi0.5
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Lateral paragigantocellular nucleuscontraLPGi-0.5
Frontal cortex area 2contraFr23
Parietal association cortexcontraPtA0.5
Insular cortexcontraICX0.5
Prefrontal cortexcontraPFC0.5
Lateral agranular prefrontal cortexcontraAGl3
Primary somatosensory cortexcontraS13
Secondary somatosensory cortexcontraS23
Somatomotoric regions layer 5contraSMRL51
Secondary visual cortexcontraV20.5
Dorsal root ganglion S1contraDRGS12
Pelvic nervesipsiAutoPN-0.5
Lateral femoral cutaneous nerveipsifemLC0
Peronal nerveipsiperonal1
Sural nerveipsisural-0.5
Muscle branch of femoral nerveipsifemm-0.5
Hamstring nerveipsihamstri1
Pudendal nerveipsipude3
Ventral branch of the pudendal nerveipsipudeVb3
Sciatic nerveipsisci-0.5
Tibial nerveipsitibial-0.5
Pudendal nervecontrapude-0.5
Ventral branch of the pudendal nervecontrapudeVb-0.5
Gastrocnemius muscleipsiMuscGC-0.5
Urinary bladderipsiOrgUrBLa-0.5
Urinary bladdercontraOrgUrBLa-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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