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Rat connectome



Spinal cord layer 5 L6 left


Abbreviation
SCL5L6
Color       
Superior regionsDeep dorsal horn L6

SynonymsAbbr.Language
Spinal cord layer 5 L6SCL5L6Eng

SubregionsSide
Intermediate portion of spinal cord layer 5 L6left
Lateral reticular extension of spinal cord layer 5 L6left
Spinal cord layer 5 lateral part L6left
Spinal cord layer 5 medial part L6left
Spinal cord layer 5 dorsal half L6left
Spinal cord layer 5 ventral part L6left

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC1
Central gray medial partipsiCGMe-0.5
Periaqueductal grayipsiPAG-0.5
Lateral periaqueductal grayipsiLPAG1.5
Periaqueductal gray dorsal partipsiPAGd0.5
Periaqueductal gray lateroventral partipsiPAGLV0.5
Ventrolateral periaqueductal grayipsiVLPAG1.5
Inferior colliculusipsiICOL-0.5
Laterodorsal tegmental nucleusipsiLDTg-0.5
Dorsal tegmental nucleus lateral partipsiDLTN-0.5
Posterior lobe of the cerebellumipsiCERCPL1
Ansiform lobule crus 1ipsiCrus11
Simple lobuleipsiSim1
Anterior lobeipsiAnL2
Paravermal region of anterior lobeipsiPVAnL1
Barringtons nucleusipsiBar1
Reticular systemipsiRF1
Magnocellular reticular nucleusipsiNRMC-0.5
Ventral part of the medial reticular formationipsiRFmV-0.5
Medial pontomedullary reticular formationipsiMPomRF-0.5
Pontine reticular nucleus oral partipsiPnO1
Pontine reticular nucleus oral part dorsolateral partipsiPnODL1
Cuneiforme nucleusipsiCnF1.5
Parabrachial nucleusipsiPB3
Lateral parabrachial nucleusipsiLPB1
Lateral parabrachial nucleus lateral partipsiLPBL1
Parabrachial nucleus central lateral partipsiPBCeL1
Parabrachial nucleus dorsolateral partipsiPBDL1
Dorsal part of the middle one third of the parabrachial nucleusipsiPBDmiotD3
Parabrachial nucleus superior lateralipsiPBSL1
Caudal bulbar reticular formationipsiCBRF-0.5
Gigantocellular reticular nucleusipsiGi1
Lateral reticular nucleusipsiLRt1
Lateral reticular nucleus lateral partipsiLRtL1
Lateral reticular nucleus magnocellular partipsiLRtMC1
Lateral reticular nucleus parvicellular partipsiLRtPC1
Lateral reticular nucleus rostral partipsiLRtr1
Medullary reticular nucleusipsiMdD-0.5
Subnucleus reticularis dorsalisipsiSRD1
Subnucleus reticularis ventralis medullae oblongataeipsiSRV-0.5
Medullary reticular nucleus dorsal partipsiMdDd3
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd1
Parvicellular reticular nucleusipsiPCRt-0.5
Ambiguus nucleusipsiAmb0.5
Principal sensory trigeminal nucleus dorsolateral partipsiPr5DL-0.5
Spinal vestibular nucleusipsiSpVe-0.5
Vestibular nucleiipsiVnc1
Nucleus of the solitary tractipsiSol1
Nucleus of the solitary tract caudal partipsiSolca-0.5
Nucleus of the solitary tract commissural partipsiSolC-0.5
Nucleus of the solitary tract lateral partipsiSolL3
Nucleus of the solitary tract medial partipsiSolM2
Rostral ventrolateral medullaipsiRVLM1
Dorsal column nucleiipsiDCN3
Cuneate nucleusipsiCu1
Gracile nucleus principal partipsiGr-0.5
Inferior olive dorsal nucleusipsiIOD1
Paragigantocellular reticular nucleusipsiPGi1
Rostral part of the ventromedial medulla oblongataipsiRMeObvm2
Medial septal nucleusipsiMS-0.5
HypothalamusipsiHYPO1
Dorsal regionipsiDHR-0.5
Lateral hypothalamic areaipsiLH2
Medial division of the hypothalamusipsiMdH2
Posterior hypothalamic areaipsiPHA1
ThalamusipsiT1
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleusipsiPC2
Posterior thalamic nuclear groupipsiPo1
Ventrobasal complexipsiVB2
Ventral posterolateral thalamic nucleusipsiVPL1
Ventral posteromedial thalamic nucleusipsiVPM1
Intralaminar nucleiipsiILN2
Lateral posterior thalamic nucleusipsiLP2
Laterodorsal thalamic nucleusipsiLD2
Posterior groupipsiPTG-0.5
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC-0.5
Basal gangliaipsiBG-0.5
Globus pallidusipsiGP-0.5
Ventral pallidumipsiVP-0.5
Accumbens nucleusipsiAc1
Infralimbic cortexipsiIL-0.5
Medial orbital cortexipsiMO-0.5
Septal regionipsiSER1
Lateral septal nucleusipsiLS-0.5
Ventral funiculusipsivf-2
Cervical segment 1ipsiCS13
Lateral cervical nucleus C1ipsiLatCC1-0.5
Ventral horn C1ipsiVHC11
Cervical segment 2ipsiCS23
Lateral cervical nucleus C2ipsiLatCC2-0.5
Ventral horn C2ipsiVHC21
Cervical segment 3ipsiCS33
Lateral cervical nucleus C3ipsiLatCC3-0.5
Ventral horn C3ipsiVHC31
Cervical segment 4ipsiCS43
Lateral cervical nucleus C4ipsiLatCC4-0.5
Cervical segment 5ipsiCS53
Cervical segment 6ipsiCS63
Area X C6ipsiSCL10C6-0.5
Cervical segment 7ipsiCS73
Area X C7ipsiSCL10C7-0.5
Cervical segment 8ipsiCS83
Thoracal segment 1ipsiT13
Thoracal segment 2ipsiT23
Thoracal segment 3ipsiT33
Thoracal segment 4ipsiT43
Mid thoracal segmentsipsiTSegM-2
Thoracal segment 5ipsiT53
Thoracal segment 6ipsiT63
Thoracal segment 7ipsiT73
Thoracal segment 8ipsiT83
Thoracal segment 9ipsiT93
Area X T9ipsiSCL10T9-0.5
Thoracal segment 10ipsiT103
Thoracal segment 11ipsiT113
Thoracal segment 12ipsiT123
Thoracal segment 13ipsiT133
Lumbar segment 1ipsiL13
Lumbar segment 2ipsiL23
Lumbar segment 3ipsiL33
Dorsal root ganglion L3ipsiDRGL3-0.5
Lumbar segment 4ipsiL43
Dorsal root ganglion L4ipsiDRGL4-0.5
Interneuron groups of layer 9 L4ipsiiGL9L4-0.5
Motoneuron groups of layer 9 L4ipsiMGL9L4-0.5
Lumbar segment 5ipsiL53
Dorsal root ganglion L5ipsiDRGL5-0.5
Interneuron groups of layer 9 L5ipsiiGL9L5-0.5
Motoneuron groups of layer 9 L5ipsiMGL9L5-0.5
Lumbar segment 6ipsiL63
Dorsal root ganglion L6ipsiDRGL6-0.5
Interneuron groups of layer 9 L6ipsiiGL9L6-0.5
Motoneuron groups of layer 9 L6ipsiMGL9L6-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Sacral segment 1ipsiSa13
Interneuron groups of layer 9 S1ipsiiGL9S1-0.5
Motoneuron groups of layer 9 S1ipsiMGL9S1-0.5
Sacral segment 2ipsiSa23
Interneuron groups of layer 9 S2ipsiiGL9S2-0.5
Motoneuron groups of layer 9 S2ipsiMGL9S2-0.5
Sacral segment 3ipsiSa33
Sacral segment 4ipsiSa43
Coccygeal segment 1ipsiCo13
Coccygeal segment 2ipsiCo23
MesencephaloncontraMEC3
Central graycontraCG-0.5
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG2
Lateral periaqueductal graycontraLPAG1
Periaqueductal gray dorsal partcontraPAGd1
Periaqueductal gray laterodorsal partcontraPAGLD1
Periaqueductal gray lateroventral partcontraPAGLV1
Periaqueductal gray medial partcontraPAGm1
Ventrolateral periaqueductal graycontraVLPAG2
Red nucleuscontraR-0.5
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Superior colliculus deep layerscontraSCd-0.5
Tegmental areacontraTGA-0.5
Laterodorsal tegmental nucleuscontraLDTg-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
CerebellumcontraCERE-0.5
Ansiform lobule crus 1contraCrus11
Simple lobulecontraSim1
Anterior lobecontraAnL1
Paravermal region of anterior lobecontraPVAnL1
Barringtons nucleuscontraBar0.5
Reticular systemcontraRF3
Magnocellular reticular nucleuscontraNRMC-0.5
Ventral part of the medial reticular formationcontraRFmV-0.5
Pontine reticular nucleus oral partcontraPnO3
Pontine reticular nucleus oral part dorsolateral partcontraPnODL0.5
Cuneiforme nucleuscontraCnF2
Parabrachial nucleuscontraPB3
Lateral parabrachial nucleuscontraLPB0.5
Lateral parabrachial nucleus internal partcontraLPBI-0.5
Lateral parabrachial nucleus lateral partcontraLPBL1
Parabrachial nucleus central lateral partcontraPBCeL0
Parabrachial nucleus dorsolateral partcontraPBDL0
Parabrachial nucleus superior lateralcontraPBSL0
Gigantocellular reticular nucleuscontraGi3
Gigantocellular reticular nucleus lateral partcontraGirL3
Lateral reticular nucleuscontraLRt3
Caudolateral part of the lateral reticular nucleuscontraLRtCL1
Lateral reticular nucleus lateral partcontraLRtL2
Medullary reticular nucleuscontraMdD-0.5
Subnucleus reticularis dorsaliscontraSRD1
Subnucleus reticularis ventralis medullae oblongataecontraSRV-0.5
Medullary reticular nucleus dorsal partcontraMdDd0.5
Parvicellular reticular nucleuscontraPCRt-0.5
Principal sensory trigeminal nucleus dorsolateral partcontraPr5DL-0.5
Spinal vestibular nucleuscontraSpVe-0.5
Vestibular nucleicontraVnc3
Nucleus of the solitary tractcontraSol3
Nucleus of the solitary tract lateral partcontraSolL2
Nucleus of the solitary tract medial partcontraSolM2
Caudal ventrolateral medullacontraCVLM1
Dorsal column nucleicontraDCN0.5
Cuneate nucleuscontraCu3
Inferior olive dorsal nucleuscontraIOD3
Paragigantocellular reticular nucleuscontraPGi3
Lateral paragigantocellular nucleuscontraLPGi-0.5
Paragigantocellular reticular nucleus medial partcontraPGiM-0.5
Rostral part of the ventromedial medulla oblongatacontraRMeObvm2
Medial septal nucleuscontraMS-0.5
HypothalamuscontraHYPO3
Lateral hypothalamic areacontraLH3
Medial division of the hypothalamuscontraMdH3
Posterior hypothalamic areacontraPHA1
ThalamuscontraT3
Central medial thalamic nucleuscontraCM2.5
Centrolateral thalamic nucleuscontraCL2.5
Paracentral thalamic nucleuscontraPC2.5
Lateral group of the dorsal thalamuscontraLAT1.5
Posterior thalamic nuclear groupcontraPo2
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT2
Mediodorsal thalamic nucleuscontraMD2
Ventrobasal complexcontraVB-0.5
Ventral posterolateral thalamic nucleuscontraVPL1
Ventral posteromedial thalamic nucleuscontraVPM1
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Intralaminar nucleicontraILN2.5
Posterior intralaminar thalamic nucleuscontraPIL-0.5
Lateral posterior thalamic nucleuscontraLP2.5
Laterodorsal thalamic nucleuscontraLD2.5
Posterior groupcontraPTG-0.5
Pretectal regioncontraPRT-0.5
Anterior pretectal nucleuscontraAPT-0.5
Posterior pretectal nucleuscontraPPT-0.5
Lateral funiculuscontralf-2
Amygdaloid complexcontraAC-0.5
Globus palliduscontraGP-0.5
Ventral pallidumcontraVP-0.5
Accumbens nucleuscontraAc2
Infralimbic cortexcontraIL-0.5
Medial orbital cortexcontraMO-0.5
Septal regioncontraSER2
Lateral septal nucleuscontraLS-0.5
Ventral horn C1contraVHC11
Ventral horn C2contraVHC21
Ventral horn C3contraVHC31
Area X C6contraSCL10C6-0.5
Area X C7contraSCL10C7-0.5
Area X T9contraSCL10T9-0.5
Sacral segment 1contraSa13
Sacral segment 2contraSa23
Sacral segment 3contraSa33
Sacral segment 4contraSa43
Coccygeal segment 1contraCo13
Coccygeal segment 2contraCo23
Pelvic ganglionipsiAutoPeG-0.5
Sciatic nerveipsisci3
CoripsiOrgsCor-0.5
StomachipsiOrgsStomS-1
Bulbocavernosus muscleipsiMuscBCV1
Bulbospongiosus muscleipsiMuscbsp2
External anal sphincteripsiExAnSp-0.5
Ischiocavernosus muscleipsiMuscicav-0.5
Musculus levator aniipsiMuscLevAn-0.5
Musculus abductor caudae dorsalisipsiMuscAbdCaDo-10
Bulbospongiosus musclecontraMuscbsp2
Musculus abductor caudae dorsaliscontraMuscAbdCaDo-10

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Red nucleusipsiR1
Pedunculopontine tegmental nucleusipsiPPTg3
A5 noradrenaline cellsipsiA52
A5 noradrenaline cells caudal partipsiA5C2
A5 noradrenaline cells rostral partipsiA5R2
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca0.5
Ventrolateral reticular formationipsiVLRF-0.5
Mesencephalic reticular formationipsiMRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Subnucleus reticularis dorsalisipsiSRD1
Medullary reticular nucleus dorsal partipsiMdDd-0.5
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Raphe magnus nucleusipsiRMg3
Caudal ventrolateral medullaipsiCVLM-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm2
Lateral hypothalamic areaipsiLH1
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag0
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo1
A11 dopamine cellsipsiA11-0.5
Zona incertaipsiZI-0.5
Zona incerta medial partipsiZIm-0.5
Zona incerta rostromedial partipsiZIrm0
Somatomotoric regionsipsiSMR-0.5
Lateral agranular prefrontal cortexipsiAGl1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS11
Secondary somatosensory cortexipsiS21
Somatomotoric regions layer 5ipsiSMRL51
Area X C4ipsiSCL10C4-0.5
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Spinal cord layer 4 C4ipsiSCL4C4-0.5
Spinal cord layer 7 C4ipsiSCL7C4-0.5
Spinal cord layer 8 C4ipsiSCL8C4-0.5
Area X C5ipsiSCL10C5-0.5
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Spinal cord layer 4 C5ipsiSCL4C5-0.5
Spinal cord layer 7 C5ipsiSCL7C5-0.5
Spinal cord layer 8 C5ipsiSCL8C5-0.5
Area X C6ipsiSCL10C6-0.5
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 4 C6ipsiSCL4C6-0.5
Spinal cord layer 7 C6ipsiSCL7C6-0.5
Spinal cord layer 8 C6ipsiSCL8C6-0.5
Dorsal root ganglion L1ipsiDRGL10
Dorsal root ganglion L2ipsiDRGL21
Spinal cord layer 3 L2ipsiSCL3L23
Spinal cord layer 4 L2ipsiSCL4L23
Spinal cord layer 1 L2ipsiSCL1L23
Spinal cord layer 2 L2ipsiSCL2L23
Dorsal root ganglion L3ipsiDRGL33
Spinal cord layer 3 L3ipsiSCL3L33
Spinal cord layer 4 L3ipsiSCL4L33
Spinal cord layer 1 L3ipsiSCL1L33
Spinal cord layer 2 L3ipsiSCL2L33
Dorsal root ganglion L4ipsiDRGL43
Spinal cord layer 3 L4ipsiSCL3L43
Spinal cord layer 4 L4ipsiSCL4L43
Spinal cord layer 1 L4ipsiSCL1L43
Spinal cord layer 2 L4ipsiSCL2L43
Dorsal root ganglion L5ipsiDRGL53
Dorsal root ganglion L6ipsiDRGL63
Red nucleuscontraR0.5
Red nucleus magnocellular part caudal regioncontraRMCC-0.5
Intermediate gray layer of the superior colliculuscontraInG-0.5
Pedunculopontine tegmental nucleuscontraPPTg3
A5 noradrenaline cellscontraA50.5
A5 noradrenaline cells caudal partcontraA5C1
A5 noradrenaline cells rostral partcontraA5R1
Caudal part of ventral locus coeruleuscontraLCveca0.5
Mesencephalic reticular formationcontraMRF-0.5
Gigantocellular reticular nucleuscontraGi0.5
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Nucleus interfascicularis hypoglossicontraNIFH1
Lateral paragigantocellular nucleuscontraLPGi-0.5
Zona incerta medial partcontraZIm-0.5
Frontal cortex area 2contraFr23
Parietal association cortexcontraPtA0.5
Insular cortexcontraICX0.5
Prefrontal cortexcontraPFC0.5
Lateral agranular prefrontal cortexcontraAGl3
Medial agranular prefrontal cortexcontraAGm2
Primary somatosensory cortexcontraS13
Secondary somatosensory cortexcontraS23
Somatomotoric regions layer 5contraSMRL51
Secondary visual cortexcontraV20.5
Dorsal root ganglion L6contraDRGL62
Pelvic nervesipsiAutoPN-0.5
Femoral nerveipsifem2
Lateral femoral cutaneous nerveipsifemLC1
Peronal nerveipsiperonal2
Common peronal nerveipsicperonal0
Saphenus nerveipsisaph0
Sural nerveipsisural-0.5
Muscle branch of femoral nerveipsifemm-0.5
Anterior femoral cutaneous nerveipsiafem0
Hamstring nerveipsihamstri3
Pudendal nerveipsipude3
Ventral branch of the pudendal nerveipsipudeVb3
Saphenous nerveipsispn0
Sciatic nerveipsisci-0.5
Tibial nerveipsitibial-0.5
Superior gluteal nerveipsisgluteal1
Obturator nerveipsiobturat2
Lateral plantar nerveipsilpn0
Medial plantar nerveipsimpn0
Pudendal nervecontrapude-0.5
Ventral branch of the pudendal nervecontrapudeVb-0.5
Hindpaw digit 1ipsiOrgHPD1-0.5
Hindpaw digit 2ipsiOrgHPD2-0.5
Hindpaw digit 4ipsiOrgHPD4-0.5
Hindpaw digit 5ipsiOrgHPD5-0.5
Dorsal hindpaw skinipsiOrgHPSD-0.5
Gastrocnemius muscleipsiMuscGC-0.5
Urinary bladderipsiOrgUrBLa-0.5
Urinary bladdercontraOrgUrBLa-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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