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Rat connectome



Spinal cord layer 5 L5 left


Abbreviation
SCL5L5
Color       
Superior regionsDeep dorsal horn L5

SynonymsAbbr.Language
Spinal cord layer 5 L5SCL5L5Eng

SubregionsSide
Intermediate portion of spinal cord layer 5 L5left
Lateral reticular extension of spinal cord layer 5 L5left
Spinal cord layer 5 lateral part L5left
Spinal cord layer 5 medial part L5left
Spinal cord layer 5 L5 mediolateral extentleft
Spinal cord layer 5 ventral part L5left

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC1
Central gray medial partipsiCGMe-0.5
Periaqueductal grayipsiPAG-0.5
Dorsal periaqueductal grayipsiDPAG1
Dorsolateral periaqueductal grayipsiDLPAG1
Lateral periaqueductal grayipsiLPAG1.5
Periaqueductal gray dorsal partipsiPAGd0.5
Periaqueductal gray lateroventral partipsiPAGLV0.5
Ventrolateral periaqueductal grayipsiVLPAG2
Inferior colliculusipsiICOL-0.5
Dorsal tegmental nucleus lateral partipsiDLTN-0.5
Posterior lobe of the cerebellumipsiCERCPL1
Ansiform lobule crus 1ipsiCrus10.5
Simple lobuleipsiSim0.5
Anterior lobeipsiAnL3
Paravermal region of anterior lobeipsiPVAnL0.5
Reticular systemipsiRF1
Magnocellular reticular nucleusipsiNRMC-0.5
Ventral part of the medial reticular formationipsiRFmV-0.5
Medial pontomedullary reticular formationipsiMPomRF-0.5
Pontine reticular nucleus oral partipsiPnO1
Cuneiforme nucleusipsiCnF1.5
Parabrachial nucleusipsiPB3
Lateral parabrachial nucleusipsiLPB1
Lateral parabrachial nucleus internal partipsiLPBI3
Lateral parabrachial nucleus lateral partipsiLPBL1
Parabrachial nucleus central lateral partipsiPBCeL1
Parabrachial nucleus dorsolateral partipsiPBDL1
Dorsal part of the middle one third of the parabrachial nucleusipsiPBDmiotD3
Parabrachial nucleus superior lateralipsiPBSL1
Caudal bulbar reticular formationipsiCBRF-0.5
Gigantocellular reticular nucleusipsiGi1
Lateral reticular nucleusipsiLRt1
Lateral reticular nucleus lateral partipsiLRtL1
Lateral reticular nucleus magnocellular partipsiLRtMC1
Lateral reticular nucleus parvicellular partipsiLRtPC1
Lateral reticular nucleus rostral partipsiLRtr1
Medullary reticular nucleusipsiMdD-0.5
Subnucleus reticularis dorsalisipsiSRD1
Subnucleus reticularis ventralis medullae oblongataeipsiSRV-0.5
Medullary reticular nucleus dorsal partipsiMdDd3
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd1
Parvicellular reticular nucleusipsiPCRt-0.5
Ambiguus nucleusipsiAmb0.5
Principal sensory trigeminal nucleus dorsolateral partipsiPr5DL-0.5
Spinal vestibular nucleusipsiSpVe-0.5
Vestibular nucleiipsiVnc1
Nucleus of the solitary tractipsiSol1
Nucleus of the solitary tract caudal partipsiSolca-0.5
Nucleus of the solitary tract commissural partipsiSolC-0.5
Nucleus of the solitary tract lateral partipsiSolL3
Nucleus of the solitary tract medial partipsiSolM2
Rostral ventrolateral medullaipsiRVLM1
Dorsal column nucleiipsiDCN3
Cuneate nucleusipsiCu1
GracileipsiGra0
Gracile nucleus principal partipsiGr-0.5
Inferior olive dorsal nucleusipsiIOD1
Inferior olive dorsal nucleus rostral partipsiIODR-0.5
Paragigantocellular reticular nucleusipsiPGi1
Rostral part of the ventromedial medulla oblongataipsiRMeObvm2
Medial septal nucleusipsiMS-0.5
HypothalamusipsiHYPO1
Dorsal regionipsiDHR-0.5
Lateral hypothalamic areaipsiLH2
Medial division of the hypothalamusipsiMdH2
Posterior hypothalamic areaipsiPHA1
ThalamusipsiT1
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleusipsiPC2
Posterior thalamic nuclear groupipsiPo1
Ventrolateral thalamic nucleusipsiVL1
Ventrobasal complexipsiVB2
Ventral posterolateral thalamic nucleusipsiVPL1
Ventral posteromedial thalamic nucleusipsiVPM1
Intralaminar nucleiipsiILN2
Lateral thalamic nuclear groupipsiLTNG1
Lateral posterior thalamic nucleusipsiLP2
Laterodorsal thalamic nucleusipsiLD2
Posterior groupipsiPTG1
Reticular thalamic nucleus lateral partipsiRtL0
Lateral funiculusipsilf-2
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC-0.5
Basal gangliaipsiBG-0.5
Globus pallidusipsiGP-0.5
Ventral pallidumipsiVP-0.5
Accumbens nucleusipsiAc1
Infralimbic cortexipsiIL-0.5
Medial orbital cortexipsiMO-0.5
Septal regionipsiSER1
Lateral septal nucleusipsiLS-0.5
Ventral funiculusipsivf-2
Cervical segment 1ipsiCS13
Lateral cervical nucleus C1ipsiLatCC1-0.5
Ventral horn C1ipsiVHC11
Cervical segment 2ipsiCS23
Lateral cervical nucleus C2ipsiLatCC2-0.5
Ventral horn C2ipsiVHC21
Cervical segment 3ipsiCS33
Lateral cervical nucleus C3ipsiLatCC3-0.5
Ventral horn C3ipsiVHC31
Cervical segment 4ipsiCS43
Lateral cervical nucleus C4ipsiLatCC4-0.5
Cervical segment 5ipsiCS53
Cervical segment 6ipsiCS63
Area X C6ipsiSCL10C6-0.5
Cervical segment 7ipsiCS73
Area X C7ipsiSCL10C7-0.5
Cervical segment 8ipsiCS83
Thoracal segment 1ipsiT13
Thoracal segment 2ipsiT23
Thoracal segment 3ipsiT33
Thoracal segment 4ipsiT43
Thoracal segment 5ipsiT53
Thoracal segment 6ipsiT63
Thoracal segment 7ipsiT73
Thoracal segment 8ipsiT83
Thoracal segment 9ipsiT93
Area X T9ipsiSCL10T9-0.5
Thoracal segment 10ipsiT103
Thoracal segment 11ipsiT113
Thoracal segment 12ipsiT123
Thoracal segment 13ipsiT133
Lumbar segment 1ipsiL13
Lumbar segment 2ipsiL23
Lumbar segment 3ipsiL33
Dorsal root ganglion L3ipsiDRGL3-0.5
Spinal cord border between layer 10 and layer 7 L3ipsiSCLb10L7L3-0.5
Interneuron groups of layer 9 L3ipsiiGL9L3-0.5
Motoneuron groups of layer 9 L3ipsiMGL9L3-0.5
Spinal cord layer 9 L3ipsiSCL9L33
Lumbar segment 4ipsiL43
Dorsal root ganglion L4ipsiDRGL4-0.5
Spinal cord border between layer 10 and layer 7 L4ipsiSCLb10L7L4-0.5
Interneuron groups of layer 9 L4ipsiiGL9L4-0.5
Motoneuron groups of layer 9 L4ipsiMGL9L4-0.5
Lumbar segment 5ipsiL53
Dorsal root ganglion L5ipsiDRGL5-0.5
Interneuron groups of layer 9 L5ipsiiGL9L5-0.5
Motoneuron groups of layer 9 L5ipsiMGL9L5-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Lumbar segment 6ipsiL63
Dorsal root ganglion L6ipsiDRGL6-0.5
Interneuron groups of layer 9 L6ipsiiGL9L6-0.5
Motoneuron groups of layer 9 L6ipsiMGL9L6-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Sacral segment 1ipsiSa13
Interneuron groups of layer 9 S1ipsiiGL9S1-0.5
Motoneuron groups of layer 9 S1ipsiMGL9S1-0.5
Sacral segment 2ipsiSa23
Sacral segment 3ipsiSa33
Sacral segment 4ipsiSa43
Coccygeal segment 1ipsiCo13
Coccygeal segment 2ipsiCo23
MesencephaloncontraMEC3
Central graycontraCG-0.5
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG2
Dorsal periaqueductal graycontraDPAG3
Dorsolateral periaqueductal graycontraDLPAG3
Lateral periaqueductal graycontraLPAG3
Periaqueductal gray dorsal partcontraPAGd1
Periaqueductal gray laterodorsal partcontraPAGLD1
Periaqueductal gray lateroventral partcontraPAGLV1
Periaqueductal gray medial partcontraPAGm1
Ventrolateral periaqueductal graycontraVLPAG3
Red nucleuscontraR-0.5
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Superior colliculus deep layerscontraSCd-0.5
Tegmental areacontraTGA-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Ansiform lobule crus 1contraCrus10.5
Simple lobulecontraSim0.5
Anterior lobecontraAnL-0.5
Paravermal region of anterior lobecontraPVAnL0.5
Reticular systemcontraRF3
Magnocellular reticular nucleuscontraNRMC-0.5
Ventral part of the medial reticular formationcontraRFmV-0.5
Pontine reticular nucleus oral partcontraPnO3
Cuneiforme nucleuscontraCnF2
Parabrachial nucleuscontraPB3
Lateral parabrachial nucleuscontraLPB0.5
Lateral parabrachial nucleus internal partcontraLPBI-0.5
Lateral parabrachial nucleus lateral partcontraLPBL1
Parabrachial nucleus central lateral partcontraPBCeL0
Parabrachial nucleus dorsolateral partcontraPBDL0
Parabrachial nucleus superior lateralcontraPBSL0
Gigantocellular reticular nucleuscontraGi3
Gigantocellular reticular nucleus lateral partcontraGirL3
Lateral reticular nucleuscontraLRt3
Caudolateral part of the lateral reticular nucleuscontraLRtCL1
Lateral reticular nucleus lateral partcontraLRtL2
Medullary reticular nucleuscontraMdD-0.5
Subnucleus reticularis dorsaliscontraSRD1
Subnucleus reticularis ventralis medullae oblongataecontraSRV-0.5
Medullary reticular nucleus dorsal partcontraMdDd0.5
Parvicellular reticular nucleuscontraPCRt-0.5
Principal sensory trigeminal nucleus dorsolateral partcontraPr5DL-0.5
Spinal vestibular nucleuscontraSpVe-0.5
Vestibular nucleicontraVnc3
Nucleus of the solitary tractcontraSol3
Nucleus of the solitary tract lateral partcontraSolL2
Nucleus of the solitary tract medial partcontraSolM2
Caudal ventrolateral medullacontraCVLM1
Dorsal column nucleicontraDCN0.5
Cuneate nucleuscontraCu3
Inferior olive dorsal nucleuscontraIOD3
Paragigantocellular reticular nucleuscontraPGi3
Lateral paragigantocellular nucleuscontraLPGi-0.5
Paragigantocellular reticular nucleus medial partcontraPGiM-0.5
Rostral part of the ventromedial medulla oblongatacontraRMeObvm2
Medial septal nucleuscontraMS-0.5
HypothalamuscontraHYPO3
Lateral hypothalamic areacontraLH3
Medial division of the hypothalamuscontraMdH3
Posterior hypothalamic areacontraPHA1
ThalamuscontraT3
Central medial thalamic nucleuscontraCM2.5
Centrolateral thalamic nucleuscontraCL3
Paracentral thalamic nucleuscontraPC2.5
Lateral group of the dorsal thalamuscontraLAT1.5
Posterior thalamic nuclear groupcontraPo2
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT2
Mediodorsal thalamic nucleuscontraMD2
Ventrolateral thalamic nucleuscontraVL3
Ventrobasal complexcontraVB3
Ventral posterolateral thalamic nucleuscontraVPL1
Ventral posteromedial thalamic nucleuscontraVPM1
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Intralaminar nucleicontraILN2.5
Posterior intralaminar thalamic nucleuscontraPIL-0.5
Lateral thalamic nuclear groupcontraLTNG3
Lateral posterior thalamic nucleuscontraLP2.5
Laterodorsal thalamic nucleuscontraLD2.5
Posterior groupcontraPTG3
Pretectal regioncontraPRT-0.5
Anterior pretectal nucleuscontraAPT-0.5
Posterior pretectal nucleuscontraPPT-0.5
Lateral funiculuscontralf-2
Spinothalamic tractcontrastt-2
Amygdaloid complexcontraAC-0.5
Globus palliduscontraGP-0.5
Ventral pallidumcontraVP-0.5
Accumbens nucleuscontraAc2
Infralimbic cortexcontraIL-0.5
Medial orbital cortexcontraMO-0.5
Septal regioncontraSER2
Lateral septal nucleuscontraLS-0.5
Ventral horn C1contraVHC11
Ventral horn C2contraVHC21
Ventral horn C3contraVHC31
Area X C6contraSCL10C6-0.5
Area X C7contraSCL10C7-0.5
Area X T9contraSCL10T9-0.5
Sacral segment 1contraSa13
Sacral segment 2contraSa23
Sacral segment 3contraSa33
Sacral segment 4contraSa43
Coccygeal segment 1contraCo13
Coccygeal segment 2contraCo23
Sciatic nerveipsisci3
CoripsiOrgsCor-0.5
StomachipsiOrgsStomS-1
Tibialis anterior muscleipsiMuscTA-0.5
Soleus muscleipsiMuscSo-0.5
Bulbocavernosus muscleipsiMuscBCV1
Bulbospongiosus muscleipsiMuscbsp2
Ischiocavernosus muscleipsiMuscicav-10
Bulbospongiosus musclecontraMuscbsp2

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Red nucleusipsiR1
Pedunculopontine tegmental nucleusipsiPPTg3
A5 noradrenaline cellsipsiA52
A5 noradrenaline cells caudal partipsiA5C2
A5 noradrenaline cells rostral partipsiA5R2
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca0.5
Ventrolateral reticular formationipsiVLRF-0.5
Mesencephalic reticular formationipsiMRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Subnucleus reticularis dorsalisipsiSRD1
Medullary reticular nucleus dorsal partipsiMdDd-0.5
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Raphe magnus nucleusipsiRMg3
Caudal ventrolateral medullaipsiCVLM-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm2
Lateral hypothalamic areaipsiLH1
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag0
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo1
A11 dopamine cellsipsiA11-0.5
Zona incertaipsiZI-0.5
Zona incerta medial partipsiZIm-0.5
Zona incerta rostromedial partipsiZIrm0
Somatomotoric regionsipsiSMR-0.5
Lateral agranular prefrontal cortexipsiAGl1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS11
Secondary somatosensory cortexipsiS21
Somatomotoric regions layer 5ipsiSMRL51
Area X C4ipsiSCL10C4-0.5
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Spinal cord layer 4 C4ipsiSCL4C4-0.5
Spinal cord layer 7 C4ipsiSCL7C4-0.5
Spinal cord layer 8 C4ipsiSCL8C4-0.5
Area X C5ipsiSCL10C5-0.5
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Spinal cord layer 4 C5ipsiSCL4C5-0.5
Spinal cord layer 7 C5ipsiSCL7C5-0.5
Spinal cord layer 8 C5ipsiSCL8C5-0.5
Area X C6ipsiSCL10C6-0.5
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 4 C6ipsiSCL4C6-0.5
Spinal cord layer 7 C6ipsiSCL7C6-0.5
Spinal cord layer 8 C6ipsiSCL8C6-0.5
Area X T13ipsiSCL10T13-0.5
Spinal cord layer 5 T13ipsiSCL5T13-0.5
Spinal cord layer 6 T13ipsiSCL6T13-0.5
Spinal cord layer 3 T13ipsiSCL3T13-0.5
Spinal cord layer 4 T13ipsiSCL4T13-0.5
Spinal cord layer 1 T13ipsiSCL1T13-0.5
Spinal cord layer 2 T13ipsiSCL2T13-0.5
Spinal cord layer 7 T13ipsiSCL7T13-0.5
Spinal cord layer 8 T13ipsiSCL8T13-0.5
Dorsal root ganglion L1ipsiDRGL10
Dorsal root ganglion L2ipsiDRGL22
Spinal cord layer 3 L2ipsiSCL3L23
Spinal cord layer 4 L2ipsiSCL4L23
Spinal cord layer 1 L2ipsiSCL1L23
Spinal cord layer 2 L2ipsiSCL2L23
Dorsal root ganglion L3ipsiDRGL33
Spinal cord layer 3 L3ipsiSCL3L33
Spinal cord layer 4 L3ipsiSCL4L33
Spinal cord layer 1 L3ipsiSCL1L33
Spinal cord layer 2 L3ipsiSCL2L33
Dorsal root ganglion L4ipsiDRGL43
Spinal cord layer 3 L4ipsiSCL3L43
Spinal cord layer 4 L4ipsiSCL4L43
Spinal cord layer 1 L4ipsiSCL1L43
Spinal cord layer 2 L4ipsiSCL2L43
Dorsal root ganglion L5ipsiDRGL53
Dorsal root ganglion L6ipsiDRGL63
Red nucleuscontraR0.5
Red nucleus magnocellular part caudal regioncontraRMCC-0.5
Intermediate gray layer of the superior colliculuscontraInG-0.5
Pedunculopontine tegmental nucleuscontraPPTg3
A5 noradrenaline cellscontraA50.5
A5 noradrenaline cells caudal partcontraA5C1
A5 noradrenaline cells rostral partcontraA5R1
Caudal part of ventral locus coeruleuscontraLCveca0.5
Mesencephalic reticular formationcontraMRF-0.5
Gigantocellular reticular nucleuscontraGi0.5
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Nucleus interfascicularis hypoglossicontraNIFH1
Lateral paragigantocellular nucleuscontraLPGi-0.5
Zona incerta medial partcontraZIm-0.5
Frontal cortex area 2contraFr23
Parietal association cortexcontraPtA0.5
Insular cortexcontraICX0.5
Prefrontal cortexcontraPFC0.5
Lateral agranular prefrontal cortexcontraAGl3
Medial agranular prefrontal cortexcontraAGm2
Primary somatosensory cortexcontraS13
Secondary somatosensory cortexcontraS23
Somatomotoric regions layer 5contraSMRL51
Secondary visual cortexcontraV20.5
Dorsal root ganglion L5contraDRGL52
Femoral nerveipsifem3
Lateral femoral cutaneous nerveipsifemLC-0.5
Peronal nerveipsiperonal2
Common peronal nerveipsicperonal-0.5
Deep peronal nerveipsiperonald-0.5
Saphenus nerveipsisaph0
Sural nerveipsisural-0.5
Muscle branch of femoral nerveipsifemm-0.5
Anterior femoral cutaneous nerveipsiafem0
Hamstring nerveipsihamstri3
Pudendal nerveipsipude3
Ventral branch of the pudendal nerveipsipudeVb3
Saphenous nerveipsispn-0.5
Sciatic nerveipsisci3
Tibial nerveipsitibial-0.5
Superior gluteal nerveipsisgluteal2
Obturator nerveipsiobturat3
Lateral plantar nerveipsilpn-0.5
Medial plantar nerveipsimpn-0.5
Pudendal nervecontrapude-0.5
Ventral branch of the pudendal nervecontrapudeVb-0.5
Hindpaw digitsipsiOrgHPD3
Hindpaw digit 1ipsiOrgHPD1-0.5
Hindpaw digit 2ipsiOrgHPD2-0.5
Hindpaw digit 4ipsiOrgHPD4-0.5
Hindpaw digit 5ipsiOrgHPD5-0.5
Hindpaw skinipsiOrgHPS1
Dorsal hindpaw skinipsiOrgHPSD-0.5
Soleus muscleipsiMuscSo-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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