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Rat connectome



Spinal cord layer 7 L5 left


Abbreviation
SCL7L5
Color       
Superior regionsIntermediate zone L5

SynonymsAbbr.Language
Spinal cord layer 7 L5SCL7L5Eng

SubregionsSide
Posterior biceps interneurons of spinal cord layer 7 L5left
Quadriceps interneurons of spinal cord layer 7 L5left
Spinal cord layer 7 L5 medial portionleft
Spinal cord layer 7 L5 dorsal portionleft

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC3
Periaqueductal grayipsiPAG3
Dorsal periaqueductal grayipsiDPAG1
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray lateroventral partipsiPAGLV0.5
Ventrolateral periaqueductal grayipsiVLPAG2
Dorsal tegmental nucleus lateral partipsiDLTN-0.5
CerebellumipsiCERE-0.5
Posterior lobe of the cerebellumipsiCERCPL1
Ansiform lobule crus 1ipsiCrus13
Simple lobuleipsiSim3
Anterior lobeipsiAnL3
Paravermal region of anterior lobeipsiPVAnL3
Anterior interposed nucleusipsiAIN-0.5
Pontine nucleiipsiPn-0.5
Pontine nuclei caudal partipsiBPNc-0.5
Reticular systemipsiRF3
Magnocellular reticular nucleusipsiNRMC-0.5
Medial reticular formationipsiRFm3
Ventral part of the medial reticular formationipsiRFmV-0.5
Medial pontomedullary reticular formationipsiMPomRF-0.5
Pontine reticular nucleus oral partipsiPnO1
Cuneiforme nucleusipsiCnF3
Parabrachial nucleusipsiPB3
Lateral parabrachial nucleusipsiLPB0.5
Lateral parabrachial nucleus internal partipsiLPBI3
Lateral parabrachial nucleus lateral partipsiLPBL1
Parabrachial nucleus central lateral partipsiPBCeL0
Parabrachial nucleus dorsolateral partipsiPBDL0
Dorsal part of the middle one third of the parabrachial nucleusipsiPBDmiotD3
Parabrachial nucleus superior lateralipsiPBSL0
Caudal bulbar reticular formationipsiCBRF-0.5
Gigantocellular reticular nucleusipsiGi3
Lateral reticular nucleusipsiLRt3
Caudal part to the midportion of the lateral reticular nucleusipsiCaLRtMp-0.5
Caudal third of the caudomedial part of the lateral reticular nucleusipsiLRtcmCt-0.5
Lateral reticular nucleus lateral partipsiLRtL1
Lateral reticular nucleus magnocellular partipsiLRtMC2
Lateral reticular nucleus parvicellular partipsiLRtPC2
Lateral reticular nucleus rostral partipsiLRtr1
Medullary reticular nucleusipsiMdD3
Subnucleus reticularis dorsalisipsiSRD1
Subnucleus reticularis ventralis medullae oblongataeipsiSRV-0.5
Medullary reticular nucleus dorsal partipsiMdDd1
Parvicellular reticular nucleusipsiPCRt3
Ambiguus nucleusipsiAmb0.5
Spinal vestibular nucleusipsiSpVe-0.5
Vestibular nucleiipsiVnc1
Nucleus of the solitary tractipsiSol3
Nucleus of the solitary tract commissural partipsiSolC-0.5
Nucleus of the solitary tract lateral partipsiSolL2
Nucleus of the solitary tract medial partipsiSolM2
Rostral ventrolateral medullaipsiRVLM1
Dorsal column nucleiipsiDCN-0.5
Cuneate nucleusipsiCu1
GracileipsiGra-0.5
Gracile nucleus principal partipsiGr-0.5
Inferior olive dorsal nucleusipsiIOD1
Inferior olive dorsal nucleus rostral partipsiIODR3
Paragigantocellular reticular nucleusipsiPGi3
Lateral paragigantocellular nucleusipsiLPGi-0.5
ThalamusipsiT3
Central medial thalamic nucleusipsiCM2
Centrolateral thalamic nucleusipsiCL2
Paracentral thalamic nucleusipsiPC2
Posterior thalamic nuclear groupipsiPo2
Ventrobasal complexipsiVB3
Ventral posterolateral thalamic nucleusipsiVPL2
Ventral posteromedial thalamic nucleusipsiVPM2
Intralaminar nucleiipsiILN2
Lateral thalamic nuclear groupipsiLTNG1
Lateral posterior thalamic nucleusipsiLP2
Laterodorsal thalamic nucleusipsiLD2
Reticular thalamic nucleus lateral partipsiRtL0
Ventral spinocerebellar tractipsivsc-2
Accumbens nucleusipsiAc1
Anterior commissureipsiac-2
Septal regionipsiSER1
Cervical segment 1ipsiCS13
Ventral horn C1ipsiVHC11
Cervical segment 2ipsiCS23
Ventral horn C2ipsiVHC21
Cervical segment 3ipsiCS33
Ventral horn C3ipsiVHC31
Cervical segment 4ipsiCS43
Cervical segment 5ipsiCS53
Cervical segment 6ipsiCS63
Area X C6ipsiSCL10C6-0.5
Spinal cord layer 7 C6ipsiSCL7C63
Spinal cord layer 8 C6ipsiSCL8C63
Cervical segment 7ipsiCS73
Area X C7ipsiSCL10C7-0.5
Spinal cord layer 7 C7ipsiSCL7C73
Spinal cord layer 8 C7ipsiSCL8C73
Spinal cord layer 9 C7ipsiSCL9C7-0.5
Cervical segment 8ipsiCS83
Thoracal segment 1ipsiT13
Thoracal segment 2ipsiT23
Thoracal segment 3ipsiT33
Thoracal segment 4ipsiT43
Thoracal segment 5ipsiT53
Thoracal segment 6ipsiT63
Thoracal segment 7ipsiT73
Thoracal segment 8ipsiT83
Thoracal segment 9ipsiT93
Area X T9ipsiSCL10T9-0.5
Spinal cord layer 7 T9ipsiSCL7T93
Spinal cord layer 8 T9ipsiSCL8T93
Thoracal segment 10ipsiT103
Thoracal segment 11ipsiT113
Thoracal segment 12ipsiT123
Thoracal segment 13ipsiT133
Lumbar segment 1ipsiL13
Lateral motoneuron groups of layer 9 L1ipsiMGL9L1L-0.5
Lumbar segment 2ipsiL23
Lumbar segment 3ipsiL33
Spinal cord border between layer 10 and layer 7 L3ipsiSCLb10L7L3-0.5
Interneuron groups of layer 9 L3ipsiiGL9L3-0.5
Motoneuron groups of layer 9 L3ipsiMGL9L3-0.5
Lateral motoneuron groups of layer 9 L3ipsiMGL9L3L-0.5
Spinal cord layer 9 L3ipsiSCL9L33
Lumbar segment 4ipsiL43
Area X L4ipsiSCL10L43
Spinal cord border between layer 10 and layer 7 L4ipsiSCLb10L7L4-0.5
Spinal cord layer 8 L4ipsiSCL8L43
Interneuron groups of layer 9 L4ipsiiGL9L4-0.5
Motoneuron groups of layer 9 L4ipsiMGL9L4-0.5
Lumbar segment 5ipsiL53
Interneuron groups of layer 9 L5ipsiiGL9L5-0.5
Motoneuron groups of layer 9 L5ipsiMGL9L5-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Lumbar segment 6ipsiL63
Interneuron groups of layer 9 L6ipsiiGL9L6-0.5
Motoneuron groups of layer 9 L6ipsiMGL9L6-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Sacral segment 1ipsiSa13
Interneuron groups of layer 9 S1ipsiiGL9S1-0.5
Motoneuron groups of layer 9 S1ipsiMGL9S1-0.5
Sacral segment 2ipsiSa23
Sacral segment 3ipsiSa33
Sacral segment 4ipsiSa43
Coccygeal segment 1ipsiCo13
Coccygeal segment 2ipsiCo23
MesencephaloncontraMEC3
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG2
Dorsal periaqueductal graycontraDPAG3
Lateral periaqueductal graycontraLPAG3
Periaqueductal gray dorsal partcontraPAGd1
Periaqueductal gray laterodorsal partcontraPAGLD1
Periaqueductal gray lateroventral partcontraPAGLV1
Ventrolateral periaqueductal graycontraVLPAG3
Medial pontine nucleuscontraMPoN2
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Superior colliculus deep layerscontraSCd-0.5
Medial part of the peduncular pontine nucleuscontraPPNM2
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Simple lobulecontraSim-0.5
Anterior lobecontraAnL-0.5
Anterior interposed nucleuscontraAIN-0.5
Superior cerebellar pedunclecontrasucep-2
Central part of the peduncular part of the pontine nucleuscontraPePoC1
Medial ventral pontine regioncontraBPNvM2
Pontine nuclei dorsal partcontraDBPn1
Central part of the ventral part of the pontine nucleuscontraBPNvC1
Reticular systemcontraRF3
Magnocellular reticular nucleuscontraNRMC-0.5
Medial reticular formationcontraRFm-0.5
Ventral part of the medial reticular formationcontraRFmV-0.5
Pontine reticular nucleus oral partcontraPnO3
Cuneiforme nucleuscontraCnF2
Parabrachial nucleuscontraPB3
Lateral parabrachial nucleuscontraLPB0.5
Lateral parabrachial nucleus lateral partcontraLPBL1
Parabrachial nucleus central lateral partcontraPBCeL1
Parabrachial nucleus dorsolateral partcontraPBDL1
Parabrachial nucleus superior lateralcontraPBSL1
Gigantocellular reticular nucleuscontraGi3
Gigantocellular reticular nucleus lateral partcontraGirL3
Lateral reticular nucleuscontraLRt3
Caudal part to the midportion of the lateral reticular nucleuscontraCaLRtMp-0.5
Caudomedial part of the lateral reticular nucleuscontraLRtcm-0.5
Caudal third of the caudomedial part of the lateral reticular nucleuscontraLRtcmCt-0.5
Lateral reticular nucleus lateral partcontraLRtL1
Lateral reticular nucleus rostral partcontraLRtr2
Medullary reticular nucleuscontraMdD3
Subnucleus reticularis dorsaliscontraSRD1
Subnucleus reticularis ventralis medullae oblongataecontraSRV-0.5
Medullary reticular nucleus dorsal partcontraMdDd1
Parvicellular reticular nucleuscontraPCRt3
Spinal vestibular nucleuscontraSpVe-0.5
Vestibular nucleicontraVnc3
Nucleus of the solitary tractcontraSol3
Nucleus of the solitary tract lateral partcontraSolL2
Nucleus of the solitary tract medial partcontraSolM2
Dorsal column nucleicontraDCN-0.5
Cuneate nucleuscontraCu3
Inferior olive dorsal nucleuscontraIOD3
Paragigantocellular reticular nucleuscontraPGi3
Lateral paragigantocellular nucleuscontraLPGi-0.5
Paragigantocellular reticular nucleus medial partcontraPGiM-0.5
ThalamuscontraT3
Anteroventral thalamic nucleuscontraAV-0.5
Central medial thalamic nucleuscontraCM2.5
Centrolateral thalamic nucleuscontraCL2.5
Paracentral thalamic nucleuscontraPC2.5
Lateral group of the dorsal thalamuscontraLAT1.5
Lateral anterior nucleus of the dorsal thalamuscontraLAAT-0.5
Posterior thalamic nuclear groupcontraPo2
Posterior thalamic nuclear group medial partcontraPoMe-0.5
Mediodorsal thalamic nucleuscontraMD-0.5
Submedius thalamic nucleuscontraSub-0.5
Ventrolateral thalamic nucleuscontraVL-0.5
Ventrobasal complexcontraVB-0.5
Ventral posterolateral thalamic nucleuscontraVPL2
Ventral posteromedial thalamic nucleuscontraVPM2
Ventrobasal complex anterior partcontraVBa-0.5
Ventromedial thalamic nucleuscontraVM-0.5
Intralaminar nucleicontraILN2.5
Intralaminar nuclei lateral partcontraILNL-0.5
Lateral thalamic nuclear groupcontraLTNG3
Lateral posterior thalamic nucleuscontraLP2.5
Laterodorsal thalamic nucleuscontraLD2.5
Posterior groupcontraPTG-0.5
Pretectal regioncontraPRT-0.5
Anterior pretectal nucleuscontraAPT-0.5
Lateral funiculuscontralf-2
Accumbens nucleuscontraAc3
Anterior commissurecontraac-2
Septal regioncontraSER2
Cervical segment 1contraCS11.5
Ventral horn C1contraVHC14
Cervical segment 2contraCS21.5
Ventral horn C2contraVHC24
Cervical segment 3contraCS31.5
Ventral horn C3contraVHC34
Cervical segment 4contraCS41.5
Cervical segment 5contraCS51.5
Cervical segment 6contraCS61.5
Area X C6contraSCL10C6-0.5
Spinal cord layer 7 C6contraSCL7C63
Spinal cord layer 8 C6contraSCL8C63
Cervical segment 7contraCS71.5
Area X C7contraSCL10C7-0.5
Spinal cord layer 7 C7contraSCL7C73
Spinal cord layer 8 C7contraSCL8C73
Spinal cord layer 9 C7contraSCL9C7-0.5
Cervical segment 8contraCS81.5
Thoracal segment 1contraT11.5
Thoracal segment 2contraT21.5
Thoracal segment 3contraT31.5
Thoracal segment 4contraT41.5
Thoracal segment 5contraT51.5
Thoracal segment 6contraT61.5
Thoracal segment 7contraT71.5
Thoracal segment 8contraT81.5
Thoracal segment 9contraT91.5
Area X T9contraSCL10T9-0.5
Spinal cord layer 7 T9contraSCL7T93
Spinal cord layer 8 T9contraSCL8T93
Thoracal segment 10contraT101.5
Thoracal segment 11contraT111.5
Thoracal segment 12contraT121.5
Thoracal segment 13contraT131.5
Lumbar segment 1contraL11.5
Lumbar segment 2contraL21.5
Lumbar segment 3contraL31.5
Lumbar segment 4contraL41.5
Area X L4contraSCL10L43
Spinal cord layer 8 L4contraSCL8L43
Lumbar segment 5contraL51.5
Lumbar segment 6contraL61.5
Sacral segment 1contraSa13
Sacral segment 2contraSa23
Sacral segment 3contraSa33
Sacral segment 4contraSa43
Coccygeal segment 1contraCo13
Coccygeal segment 2contraCo23
Pelvic ganglionipsiAutoPeG-0.5
Sciatic nerveipsisci-2
CoripsiOrgsCor-0.5
StomachipsiOrgsStomS-1
Quadriceps femoris muscleipsiMuscQuadF-0.5
Bulbocavernosus muscleipsiMuscBCV-10
Bulbospongiosus muscleipsiMuscbsp2
Ventral bulbospongiosus muscleipsiMuscbspV-10
Dorsal bulbospongiosus muscleipsiMuscbspD-10
Ischiocavernosus muscleipsiMuscicav-10
Triceps surae muscleipsiMuscTriSu-0.5
Bulbospongiosus musclecontraMuscbsp2
Ventral bulbospongiosus musclecontraMuscbspV-10
Dorsal bulbospongiosus musclecontraMuscbspD-10
Ischiocavernosus musclecontraMuscicav-10

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Red nucleusipsiR1
Lateral cerebellar nucleusipsiCERL0.5
Medial cerebellar nucleusipsiMed1
A5 noradrenaline cellsipsiA52
A5 noradrenaline cells caudal partipsiA5C2
A5 noradrenaline cells rostral partipsiA5R2
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca3
Medial reticular formationipsiRFm-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Mesencephalic reticular formationipsiMRF-0.5
Pontine reticular nucleusipsiPRN3
Dorsolateral pontine reticular formationipsiPRNDL1
Pontine reticular nucleus oral partipsiPnO1
Pontine reticular nucleus caudal partipsiPNC1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus medial partipsiGiM-0.5
Gigantocellular reticular nucleus rostral partipsiGiRo-0.5
Gigantocellular reticular nucleus ventrolateral partipsiGiVL3
Subnucleus reticularis dorsalisipsiSRD1
Medullary reticular nucleus dorsal partipsiMdDd1
Subcoeruleus nucleusipsiSubC3
Principal sensory trigeminal nucleusipsiPr5-0.5
Spinal trigeminal nucleus caudal partipsiSp5C-0.5
Spinal trigeminal nucleus interpolar partipsiSp5I-0.5
Ventral part of spinal trigeminal nucleus oral partipsiSp5OV-0.5
Lateral vestibular nucleusipsiLVe0.5
Raphe magnus nucleusipsiRMg3
Raphe obscurus nucleusipsiROb-0.5
Raphe pallidus nucleusipsiRPa3
Caudal ventrolateral medullaipsiCVLM-0.5
Lateral paragigantocellular nucleusipsiLPGi1
Rostral part of the ventromedial medulla oblongataipsiRMeObvm2
Lateral hypothalamic areaipsiLH1
Zona incerta rostromedial partipsiZIrm0
Lateral agranular prefrontal cortexipsiAGl1
Medial agranular prefrontal cortexipsiAGm1
Primary somatosensory cortexipsiS11
Secondary somatosensory cortexipsiS21
Somatomotoric regions layer 5ipsiSMRL51
Area X C4ipsiSCL10C4-0.5
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Spinal cord layer 4 C4ipsiSCL4C4-0.5
Spinal cord layer 7 C4ipsiSCL7C4-0.5
Spinal cord layer 8 C4ipsiSCL8C4-0.5
Area X C5ipsiSCL10C5-0.5
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Spinal cord layer 4 C5ipsiSCL4C5-0.5
Spinal cord layer 7 C5ipsiSCL7C5-0.5
Spinal cord layer 8 C5ipsiSCL8C5-0.5
Area X C6ipsiSCL10C6-0.5
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 4 C6ipsiSCL4C6-0.5
Spinal cord layer 7 C6ipsiSCL7C6-0.5
Spinal cord layer 8 C6ipsiSCL8C6-0.5
Area X T13ipsiSCL10T13-0.5
Spinal cord layer 5 T13ipsiSCL5T13-0.5
Spinal cord layer 6 T13ipsiSCL6T13-0.5
Spinal cord layer 3 T13ipsiSCL3T13-0.5
Spinal cord layer 4 T13ipsiSCL4T13-0.5
Spinal cord layer 1 T13ipsiSCL1T13-0.5
Spinal cord layer 2 T13ipsiSCL2T13-0.5
Spinal cord layer 7 T13ipsiSCL7T13-0.5
Spinal cord layer 8 T13ipsiSCL8T13-0.5
Dorsal root ganglion L1ipsiDRGL10
Dorsal root ganglion L2ipsiDRGL22
Dorsal root ganglion L3ipsiDRGL33
Dorsal root ganglion L4ipsiDRGL43
Dorsal root ganglion L5ipsiDRGL53
Dorsal root ganglion L6ipsiDRGL63
Red nucleuscontraR0.5
Red nucleus magnocellular part caudal regioncontraRMCC-0.5
Intermediate gray layer of the superior colliculuscontraInG-0.5
Lateral cerebellar nucleuscontraCERL1
Medial cerebellar nucleuscontraMed3
A5 noradrenaline cellscontraA50.5
A5 noradrenaline cells caudal partcontraA5C1
A5 noradrenaline cells rostral partcontraA5R1
Locus coeruleuscontraLC1
Caudal part of ventral locus coeruleuscontraLCveca0.5
Medial reticular formationcontraRFm-0.5
Mesencephalic reticular formationcontraMRF-0.5
Pontine reticular nucleus oral partcontraPnO0.5
Pontine reticular nucleus caudal partcontraPNC0.5
Gigantocellular reticular nucleuscontraGi0.5
Gigantocellular reticular nucleus alpha partcontraGiA3
Gigantocellular reticular nucleus medial partcontraGiM-0.5
Gigantocellular reticular nucleus ventral partcontraGiV3
Medullary reticular nucleus dorsal partcontraMdDd0.5
Ventral part of spinal trigeminal nucleus oral partcontraSp5OV-0.5
Lateral paragigantocellular nucleuscontraLPGi-0.5
Cerebral cortexcontraCEC3
Lateral agranular prefrontal cortexcontraAGl1
Medial agranular prefrontal cortexcontraAGm1
Primary somatosensory cortexcontraS11
Somatomotoric regions layer 5contraSMRL51
Dorsal root ganglion L5contraDRGL52
Ventromedial nucleus of lumbar segment 5contraVML53
Femoral nerveipsifem2
Peronal nerveipsiperonal2
Muscle branch of femoral nerveipsifemm-0.5
Hamstring nerveipsihamstri3
Sciatic nerveipsisci-0.5
Tibial nerveipsitibial-0.5
Gastrocnemius nerveipsigastrocn-0.5
Superior gluteal nerveipsisgluteal2
Obturator nerveipsiobturat2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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