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Rat connectome



Dorsal horn S1 right


Abbreviation
DHS1
Color       
Superior regionsSpinal cord layers S1

SynonymsAbbr.Language
Dorsal horn S1DHS1Eng

SubregionsSide
Deep dorsal horn S1right
Nucleus proprius S1right
Superficial dorsal horn S1right
Dorsal commissure of the dorsal horn S1right
Dorsolateral column of S1right
Dorsomedial column of the dorsal horn S1right

Output to

NameSideAbbr.WeightDetails
Central graycontraCG-0.5
Tegmental areacontraTGA-0.5
Ansiform lobule crus 1contraCrus1-0.5
Simple lobulecontraSim-0.5
Paravermal region of anterior lobecontraPVAnL-0.5
Cuneiforme nucleuscontraCnF-0.5
Caudal part to the midportion of the lateral reticular nucleuscontraCaLRtMp0
Caudal third of the caudomedial part of the lateral reticular nucleuscontraLRtcmCt0
Lateral reticular nucleus magnocellular partcontraLRtMC1
Lateral reticular nucleus parvicellular partcontraLRtPC2
Lateral reticular nucleus subtrigeminal partcontraLRtS50
HypothalamuscontraHYPO-0.5
ThalamuscontraT3
Central amygdaloid nucleuscontraCe0.5
Central grayipsiCG-0.5
Central gray dorsal partipsiCGD-0.5
Central gray dorsoventral partipsiCGDV-0.5
Central gray mediolateral partipsiCGMeL-0.5
Nucleus of DarkschewitschipsiDk-0.5
Area surrounding the oculomotor complexipsiASOCS-0.5
Red nucleusipsiR-1
Inferior colliculusipsiICOL-0.5
Intercollicular nucleusipsiInCo-0.5
Commissure of the superior colliculusipsicsc-2
Superior colliculus intermediate layersipsiSCi-0.5
Superior colliculus deep layersipsiSCd-0.5
Mesencephalic reticular formationipsiMRF1
Parabrachial nucleus dorsal partipsiPBD-0.5
Caudal part to the midportion of the lateral reticular nucleusipsiCaLRtMp0
Caudal third of the caudomedial part of the lateral reticular nucleusipsiLRtcmCt0
Lateral reticular nucleus magnocellular partipsiLRtMC1
Lateral reticular nucleus parvicellular partipsiLRtPC2
Lateral reticular nucleus subtrigeminal partipsiLRtS50
Nucleus of the solitary tractipsiSol-0.5
Cuneate nucleusipsiCu-0.5
Gracile nucleus principal partipsiGr-0.5
HypothalamusipsiHYPO-0.5
Lateral hypothalamic areaipsiLH-0.5
Posterior hypothalamic areaipsiPHA-0.5
Ventrolateral thalamic nucleusipsiVL-0.5
Zona incertaipsiZI-0.5
Lateral funiculusipsilf-2
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC-0.5
Central amygdaloid nucleus anterior partipsiCeAn-0.5
Basal gangliaipsiBG-0.5
Infralimbic cortexipsiIL-0.5
Medial orbital cortexipsiMO-0.5
Posterior commissureipsipc-2
Medial geniculate nucleus medial partipsiMGM-0.5
Ventrolateral funiculusipsivLF-2
Spinomesencephalic tractipsismT-2
Cervical enlargement dorsal hornipsiCSegEd-0.5
Sciatic nerveipsisci-2
ColonipsiOrgsColonS0.5
Bulbospongiosus muscleipsiMuscbsp-10
ProstateipsiOrgProst-10
Seminal vesicleipsiOrgRepSV-10
Urinary bladderipsiOrgUrBLa-0.5
Trigone of the urinary bladderipsiOrgUrBLaT-10

Input from

NameSideAbbr.WeightDetails
Paralemniscal nucleuscontraPL-0.5
Periaqueductal graycontraPAG0
Dorsolateral periaqueductal gray caudal partcontraPAGdlc0
Ventrolateral periaqueductal gray caudal partcontraPAGvlc0.5
Ventrolateral periaqueductal gray rostral partcontraPAGvlr0.5
Pedunculopontine tegmental nucleuscontraPPTg1
Locus coeruleuscontraLC1
Gigantocellular reticular nucleuscontraGi1
Lateral paragigantocellular nucleuscontraLPGi1
A11 dopamine cellscontraA110.5
Parafascicular thalamic nucleus prerubral partcontraPFPR0.5
Central cervical nucleus C1contraCeCvC13
Lateral cervical nucleus C1contraLatCC11
Lateral spinal nucleus C1contraLSpC11
Area X C1contraSCL10C12
Spinal cord layer 5 C1contraSCL5C12
Spinal cord layer 3 C1contraSCL3C10.5
Spinal cord layer 4 C1contraSCL4C10.5
Ventral horn C1contraVHC13
Central cervical nucleus C2contraCeCvC23
Lateral cervical nucleus C2contraLatCC21
Lateral spinal nucleus C2contraLSpC21
Area X C2contraSCL10C22
Spinal cord layer 5 C2contraSCL5C22
Spinal cord layer 3 C2contraSCL3C20.5
Spinal cord layer 4 C2contraSCL4C20.5
Ventral horn C2contraVHC23
Central cervical nucleus C3contraCeCvC33
Lateral cervical nucleus C3contraLatCC31
Lateral spinal nucleus C3contraLSpC31
Ventral horn C3contraVHC33
Periaqueductal grayipsiPAG0
Dorsolateral periaqueductal gray caudal partipsiPAGdlc0
Ventrolateral periaqueductal gray caudal partipsiPAGvlc0
Ventrolateral periaqueductal gray rostral partipsiPAGvlr0
Red nucleusipsiR3
Red nucleus ventrolateral partipsiRveL1
Ventrolateral tegmental areaipsiVLTg2
Pedunculopontine tegmental nucleusipsiPPTg1
A5 noradrenaline cellsipsiA5-0.5
Locus coeruleusipsiLC2
Parabrachial nucleus dorsal partipsiPBD-0.5
Gigantocellular reticular nucleusipsiGi2
Subcoeruleus nucleusipsiSubC1
Raphe magnus nucleusipsiRMg3
Paragigantocellular reticular nucleusipsiPGi1
Lateral paragigantocellular nucleusipsiLPGi2
Lateral hypothalamic areaipsiLH1
A11 dopamine cellsipsiA111
Parafascicular thalamic nucleus prerubral partipsiPFPR1
Central cervical nucleus C1ipsiCeCvC13
Lateral cervical nucleus C1ipsiLatCC11
Lateral spinal nucleus C1ipsiLSpC11
Area X C1ipsiSCL10C12
Spinal cord layer 5 C1ipsiSCL5C12
Spinal cord layer 3 C1ipsiSCL3C10.5
Spinal cord layer 4 C1ipsiSCL4C10.5
Ventral horn C1ipsiVHC13
Central cervical nucleus C2ipsiCeCvC23
Lateral cervical nucleus C2ipsiLatCC21
Lateral spinal nucleus C2ipsiLSpC21
Area X C2ipsiSCL10C22
Spinal cord layer 5 C2ipsiSCL5C22
Spinal cord layer 3 C2ipsiSCL3C20.5
Spinal cord layer 4 C2ipsiSCL4C20.5
Ventral horn C2ipsiVHC23
Central cervical nucleus C3ipsiCeCvC33
Lateral cervical nucleus C3ipsiLatCC31
Lateral spinal nucleus C3ipsiLSpC31
Ventral horn C3ipsiVHC33
Dorsal root ganglion L4ipsiDRGL4-0.5
Dorsal root ganglion L5ipsiDRGL5-0.5
Peronal nervecontraperonal0.5
Tibial nervecontratibial0.5
Sciatic nerveipsisci-0.5
Dorsal penile nerveipsidpn-0.5
Detrusor muscle of the urinary bladderipsiOrgUrBLaDe-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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