University of Rostock

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Rat connectome



Femoral bone marrow right


Abbreviation
OrgSkFemM
Color       
Superior regionsFemoral bone

SynonymsAbbr.Language
Femoral bone marrowOrgSkFemMEng

Input from

NameSideAbbr.WeightDetails
Nucleus of DarkschewitschcontraDk1
Periaqueductal graycontraPAG3
Red nucleuscontraR1
Substantia nigra A9contraSN1
Laterodorsal tegmental nucleuscontraLDTg1
Ventral tegmental nucleuscontraVTg1
Pedunculopontine tegmental nucleuscontraPPTg1
A5 noradrenaline cellscontraA52
A7 noradrenaline cellscontraA72
Locus coeruleuscontraLC3
Parapyramidal nucleuscontraPPy1
Deep mesencephalic nucleuscontraDpMe1
Pontine reticular nucleuscontraPRN1
Parabrachial nucleuscontraPB1
Gigantocellular reticular nucleuscontraGi2
Subcoeruleus nucleuscontraSubC2
C3 adrenaline cellscontraC31
Ambiguus nucleuscontraAmb1
Nucleus of the solitary tractcontraSol1
Raphe nucleicontraRAN2
Ventral lateral medulla oblongatacontraMVL2
Lateral paragigantocellular nucleuscontraLPGi2
Paraventricular hypothalamic nucleus parvicellular division dorsal partcontraPaPcD-0.5
Paraventricular hypothalamic nucleus magnocellular divisioncontraPaMag-0.5
Paraventricular hypothalamic nucleus parvocellular division dorsomedial capsular partcontraPavPodmc-0.5
Paraventricular hypothalamic nucleus parvocellular division ventral partcontraPavPoV-0.5
Paraventricular thalamic nucleus anterior partcontraPVA-0.5
Paraventricular thalamic nucleus posterior partcontraPVP-0.5
Cervical segmentscontraCSeg1
Thoracal segmentscontraTSeg3
Intermediolateral cell column T8contraIMLT8-0.5
Intermediolateral cell column T9contraIMLT9-0.5
Intermediolateral cell column T10contraIMLT10-0.5
Intermediolateral cell column T11contraIMLT11-0.5
Intermediolateral cell column T12contraIMLT12-0.5
Intermediolateral cell column T13contraIMLT13-0.5
Lumbar segmentscontraLSeg2
Intermediolateral cell column L1contraIMLL1-0.5
Sacral segmentscontraSSeg1
Nucleus of DarkschewitschipsiDk1
Periaqueductal grayipsiPAG3
Red nucleusipsiR1
Substantia nigra A9ipsiSN1
Laterodorsal tegmental nucleusipsiLDTg1
Ventral tegmental nucleusipsiVTg1
Pedunculopontine tegmental nucleusipsiPPTg1
A5 noradrenaline cellsipsiA52
A7 noradrenaline cellsipsiA72
Locus coeruleusipsiLC3
Parapyramidal nucleusipsiPPy1
Deep mesencephalic nucleusipsiDpMe1
Pontine reticular nucleusipsiPRN1
Parabrachial nucleusipsiPB1
Gigantocellular reticular nucleusipsiGi2
Subcoeruleus nucleusipsiSubC2
C3 adrenaline cellsipsiC31
Ambiguus nucleusipsiAmb1
Area postremaipsiAP1
Nucleus of the solitary tractipsiSol1
Raphe nucleiipsiRAN2
Ventral lateral medulla oblongataipsiMVL2
Dorsal paragigantocellular nucleusipsiDPGi2
Lateral paragigantocellular nucleusipsiLPGi2
Diagonal band of BrocaipsiDBB2
Substantia innominataipsiSI1
Lateral preoptic areaipsiLPO2
Medial preoptic areaipsiMPA2
Medial preoptic nucleusipsiMPO2
Median preoptic nucleusipsiMnPO1
Dorsal tuberomammillary nucleusipsiDTM1
Vascular organ of the lamina terminalisipsiVOLT2
Lateral hypothalamic areaipsiLH1
Lateral hypothalamic area perifornical partipsiPFx2
Dorsal hypothalamic areaipsiDA1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1
Posterior hypothalamic areaipsiPHA2
Ventromedial hypothalamic nucleusipsiVMH1
Arcuate nucleusipsiArc1
Paraventricular hypothalamic nucleus parvicellular division dorsal partipsiPaPcD3
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag2
Paraventricular hypothalamic nucleus parvocellular division dorsomedial capsular partipsiPavPodmc2
Paraventricular hypothalamic nucleus parvocellular division ventral partipsiPavPoV3
Suprachiasmatic nucleusipsiSCh1
Supraoptic nucleus [Supraoptic region]ipsiSO2
Lateral mammillary nucleusipsiLM1
Premammillary nucleusipsiPMAN1
Retrochiasmatic areaipsiRCh1
Paraventricular thalamic nucleus anterior partipsiPVA2
Paraventricular thalamic nucleus posterior partipsiPVP1
Subfornical organipsiSFO1
Zona incertaipsiZI1
HabenulaipsiHAB1
Lateral funiculusipsilf-0.5
Amygdaloid complexipsiAC1
Bed nucleus of the stria terminalisipsiBST3
HippocampusipsiHIPP2
Entorhinal cortexipsiEnt1
Piriform cortexipsiPir4
Cingulate cortexipsiCg1
Prelimbic cortexipsiPrL1
Infralimbic cortexipsiIL1
Insular cortexipsiICX4
Motoric regionsipsiM1
Sensory regionsipsiSR1
Septal regionipsiSER2
Cervical segmentsipsiCSeg1
Thoracal segmentsipsiTSeg3
Spinal cord layer 5 T1ipsiSCL5T1-0.5
Spinal cord layer 4 T1ipsiSCL4T1-0.5
Spinal cord layer 1 T1ipsiSCL1T1-0.5
Spinal cord layer 2 T1ipsiSCL2T1-0.5
Spinal cord layer 8 T1ipsiSCL8T1-0.5
Spinal cord layer 9 T1ipsiSCL9T1-0.5
Spinal cord layer 5 T2ipsiSCL5T2-0.5
Spinal cord layer 4 T2ipsiSCL4T2-0.5
Spinal cord layer 1 T2ipsiSCL1T2-0.5
Spinal cord layer 2 T2ipsiSCL2T2-0.5
Spinal cord layer 8 T2ipsiSCL8T2-0.5
Spinal cord layer 9 T2ipsiSCL9T2-0.5
Spinal cord layer 5 T3ipsiSCL5T3-0.5
Spinal cord layer 4 T3ipsiSCL4T3-0.5
Spinal cord layer 1 T3ipsiSCL1T3-0.5
Spinal cord layer 2 T3ipsiSCL2T3-0.5
Spinal cord layer 8 T3ipsiSCL8T3-0.5
Spinal cord layer 9 T3ipsiSCL9T3-0.5
Intermediolateral cell column T4ipsiIMLT4-0.5
Area X T4ipsiSCL10T41
Spinal cord layer 5 T4ipsiSCL5T4-0.5
Spinal cord layer 4 T4ipsiSCL4T4-0.5
Spinal cord layer 1 T4ipsiSCL1T4-0.5
Spinal cord layer 2 T4ipsiSCL2T4-0.5
Spinal cord layer 8 T4ipsiSCL8T4-0.5
Spinal cord layer 9 T4ipsiSCL9T4-0.5
Intermediolateral cell column T5ipsiIMLT5-0.5
Area X T5ipsiSCL10T51
Spinal cord layer 5 T5ipsiSCL5T5-0.5
Spinal cord layer 4 T5ipsiSCL4T5-0.5
Spinal cord layer 1 T5ipsiSCL1T5-0.5
Spinal cord layer 2 T5ipsiSCL2T5-0.5
Spinal cord layer 8 T5ipsiSCL8T5-0.5
Spinal cord layer 9 T5ipsiSCL9T5-0.5
Intermediolateral cell column T6ipsiIMLT6-0.5
Area X T6ipsiSCL10T61
Spinal cord layer 5 T6ipsiSCL5T6-0.5
Spinal cord layer 4 T6ipsiSCL4T6-0.5
Spinal cord layer 1 T6ipsiSCL1T6-0.5
Spinal cord layer 2 T6ipsiSCL2T6-0.5
Spinal cord layer 8 T6ipsiSCL8T6-0.5
Spinal cord layer 9 T6ipsiSCL9T6-0.5
Intermediolateral cell column T7ipsiIMLT7-0.5
Area X T7ipsiSCL10T71
Spinal cord layer 5 T7ipsiSCL5T7-0.5
Spinal cord layer 1 T7ipsiSCL1T7-0.5
Spinal cord layer 4 T7ipsiSCL4T7-0.5
Spinal cord layer 2 T7ipsiSCL2T7-0.5
Spinal cord layer 8 T7ipsiSCL8T7-0.5
Spinal cord layer 9 T7ipsiSCL9T7-0.5
Intermediolateral cell column T8ipsiIMLT80.5
Area X T8ipsiSCL10T81
Spinal cord layer 5 T8ipsiSCL5T8-0.5
Spinal cord layer 4 T8ipsiSCL4T8-0.5
Spinal cord layer 1 T8ipsiSCL1T8-0.5
Spinal cord layer 2 T8ipsiSCL2T8-0.5
Spinal cord layer 8 T8ipsiSCL8T8-0.5
Spinal cord layer 9 T8ipsiSCL9T8-0.5
Intermediolateral cell column T9ipsiIMLT90.5
Area X T9ipsiSCL10T91
Spinal cord layer 5 T9ipsiSCL5T9-0.5
Spinal cord layer 4 T9ipsiSCL4T9-0.5
Spinal cord layer 1 T9ipsiSCL1T9-0.5
Spinal cord layer 2 T9ipsiSCL2T9-0.5
Spinal cord layer 8 T9ipsiSCL8T9-0.5
Spinal cord layer 9 T9ipsiSCL9T9-0.5
Intermediolateral cell column T10ipsiIMLT103
Area X T10ipsiSCL10T101
Spinal cord layer 5 T10ipsiSCL5T10-0.5
Spinal cord layer 4 T10ipsiSCL4T10-0.5
Spinal cord layer 1 T10ipsiSCL1T10-0.5
Spinal cord layer 2 T10ipsiSCL2T10-0.5
Spinal cord layer 8 T10ipsiSCL8T10-0.5
Spinal cord layer 9 T10ipsiSCL9T10-0.5
Intermediolateral cell column T11ipsiIMLT113
Area X T11ipsiSCL10T111
Spinal cord layer 5 T11ipsiSCL5T11-0.5
Spinal cord layer 4 T11ipsiSCL4T11-0.5
Spinal cord layer 1 T11ipsiSCL1T11-0.5
Spinal cord layer 2 T11ipsiSCL2T11-0.5
Spinal cord layer 8 T11ipsiSCL8T11-0.5
Spinal cord layer 9 T11ipsiSCL9T11-0.5
Intermediolateral cell column T12ipsiIMLT123
Area X T12ipsiSCL10T121
Spinal cord layer 5 T12ipsiSCL5T12-0.5
Spinal cord layer 4 T12ipsiSCL4T12-0.5
Spinal cord layer 1 T12ipsiSCL1T12-0.5
Spinal cord layer 2 T12ipsiSCL2T12-0.5
Spinal cord layer 8 T12ipsiSCL8T12-0.5
Spinal cord layer 9 T12ipsiSCL9T12-0.5
Intermediolateral cell column T13ipsiIMLT133
Area X T13ipsiSCL10T131
Spinal cord layer 5 T13ipsiSCL5T13-0.5
Spinal cord layer 4 T13ipsiSCL4T13-0.5
Spinal cord layer 1 T13ipsiSCL1T13-0.5
Spinal cord layer 2 T13ipsiSCL2T13-0.5
Spinal cord layer 8 T13ipsiSCL8T13-0.5
Spinal cord layer 9 T13ipsiSCL9T13-0.5
Lumbar segmentsipsiLSeg2
Intermediolateral cell column L1ipsiIMLL13
Area X L1ipsiSCL10L11
Area X L2ipsiSCL10L2-0.5
Area X L3ipsiSCL10L3-0.5
Area X L4ipsiSCL10L4-0.5
Area X L5ipsiSCL10L5-0.5
Area X L6ipsiSCL10L6-0.5
Sacral segmentsipsiSSeg1
Sacral parasympathetic nucleus S1ipsiSPSyS1-0.5
Area X S1ipsiSCL10S1-0.5
Sacral parasympathetic nucleus S2ipsiSPSyS2-0.5
Area X S2ipsiSCL10S2-0.5
Sacral parasympathetic nucleus S3ipsiSPSyS3-0.5
Area X S3ipsiSCL10S3-0.5
Sacral parasympathetic nucleus S4ipsiSPSyS4-0.5
Area X S4ipsiSCL10S4-0.5
Thoracic sympathetic ganglion at level T 10ipsiAutoTSG101
Thoracic sympathetic ganglion at level T 11ipsiAutoPaGTsym111
Thoracic sympathetic ganglion at level T 12ipsiAutoPaGTsym121
Thoracic sympathetic ganglion at level T 13ipsiAutoPaGTsym131
Lumbar sympathetic gangliaipsiAutoLSG1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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