University of Rostock

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Rat connectome



Dorsal raphe nucleus dorsal part left


Abbreviation
DRD
Color       
Superior regionsDorsal raphe nucleus

SynonymsAbbr.Language
Dorsal raphe nucleus dorsal partDRDEng
Dorsal cluster of the dorsal raphe nucleus Eng
Dorsal raphe nucleus dorsal partDRdEng
Dorsal raphe nucleus dorsal division Eng
Dorsal region of the raphe nucleus dorsal part Eng
Caudal ventromedial region subjacent to the Aqueduct Eng

SubregionsSide
Dorsal half of the dorsal raphe nucleusleft
Dorsal raphe nucleus dorsal part non serotoninergic populationleft
Dorsal raphe nucleus dorsal part serotoninergic populationleft
Ventral dorsal parts of dorsal raphe nucleusleft
Dorsal raphe nucleus dorsal dision rostral partleft
Dorsal raphe nucleus dorsal division mid partleft
Dorsal raphe nucleus dorsal division caudal partleft
Dorsal raphe nucleus dorsal coreleft
Shell of dorsal part of the dorsal raphe nucleusleft

Output to

NameSideAbbr.WeightDetails
Dorsolateral periaqueductal grayipsiDLPAG3
Superior colliculus deep layersipsiSCd-0.5
Tegmental areaipsiTGA-0.5
Substantia nigra A9ipsiSN3
Locus coeruleusipsiLC1
Parvicellular reticular nucleusipsiPCRt3
Facial nucleusipsi73
Principal sensory trigeminal nucleusipsiPr53
Spinal trigeminal nucleus caudal partipsiSp5C-0.5
Raphe magnus nucleusipsiRMg-0.5
Rostral ventrolateral medullaipsiRVLM3
Diagonal band of BrocaipsiDBB-0.5
Medial septal nucleusipsiMS3
Preoptic regionipsiPREO1
Vascular organ of the lamina terminalisipsiVOLT-0.5
Ventromedial hypothalamic nucleusipsiVMH1
Anteroventral thalamic nucleusipsiAV2
Central medial thalamic nucleusipsiCM3
Centrolateral thalamic nucleusipsiCL3
Paracentral thalamic nucleus caudal partipsiPC-c1
Paracentral thalamic nucleus rostral partipsiPC-r1
Parafascicular thalamic nucleusipsiPF-0.5
Parafascicular thalamic nucleus lateral partipsiPFL4
Parafascicular thalamic nucleus medial partipsiPFM3
Rhomboid thalamic nucleusipsiRh2
Mediodorsal thalamic nucleusipsiMD3
Intermediodorsal thalamic nucleusipsiIMD2
Submedius thalamic nucleusipsiSub2
Paratenial thalamic nucleusipsiPT3
Paraventricular thalamic nucleus anterior partipsiPVA4
Paraventricular thalamic nucleus medial partipsiPVM3
Paraventricular thalamic nucleus posterior partipsiPVP3
Reuniens thalamic nucleusipsiRe3
Subfornical organipsiSFO-0.5
Ventrolateral thalamic nucleusipsiVL3
Ventral posterior thalamic complexipsiVPT1
Ventral posterior thalamic nucleus parvicellular partipsiVPPC1
Ventral posteromedial thalamic nucleusipsiVPM3
Ventromedial thalamic nucleus caudal partipsiVMc2
Oval paracentral thalamic nucleusipsiOPC2
Reticular thalamic nucleus ventral partipsiRtV1.5
Lateral habenular nucleusipsiLHb3
Amygdaloid complexipsiAC-0.5
Basolateral amygdaloid nucleusipsiBL3
Basolateral amygdaloid nucleus ventral partipsiBLve3
Posterior basolateral nucleusipsiBLP3
Basomedial amygdaloid nucleusipsiBM-0.5
Anterior basomedial nucleusipsiBMA3
Posterior basomedial nucleusipsiBMP3
Central amygdaloid nucleusipsiCe2
Medial amygdaloid nucleusipsiMe0.5
Accumbens nucleusipsiAc-0.5
Accumbens nucleus shellipsiAcbSh-0.5
Dorsomedial shellipsiAcbShdm-10
Caudate putamenipsiCPu3
Subthalamic nucleusipsiSTh1.5
Anterior cingulate cortexipsiACC-0.5
Insular cortexipsiICX-0.5
Somatomotoric regionsipsiSMR3
Motoric regionsipsiM3
Lateral agranular prefrontal cortexipsiAGl2.5
Primary somatosensory cortexipsiS12.5
Visual regionsipsiVR3
Primary visual cortexipsiV11
Ventrolateral orbital areaipsiVLO-0.5
Lateral septal nucleusipsiLS0.5
Lateral septal nucleus dorsal partipsiLSD1
Intermediolateral septal areaipsiSERimL2
Ependyma of rostral 3d ventricleipsi3VRe-0.5
Lateral ventricle ependymal wallipsiLVew-0.5
Parvicellular reticular nucleuscontraPCRt3
Facial nucleuscontra71
Principal sensory trigeminal nucleuscontraPr51
Rostral subambigual region of the rostral ventrolateral medullacontraRsARVLM3
Preoptic regioncontraPREO0.5
Ventromedial hypothalamic nucleuscontraVMH0.5
Central medial thalamic nucleuscontraCM-0.5
Parafascicular thalamic nucleuscontraPF-0.5
Ventrolateral thalamic nucleuscontraVL1.5
Ventral posteromedial thalamic nucleuscontraVPM1.5
Accumbens nucleuscontraAc-0.5
Accumbens nucleus shellcontraAcbSh-0.5
Caudate putamencontraCPu-0.5
Lateral septal nucleuscontraLS0.5
Stellate ganglionipsiAutoSteG0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG4
Central gray dorsal partipsiCGD1
Central gray lateral partipsiCGL3
Central gray lateral ventral partipsiCGVD4
Central gray ventral areaipsiCGva4
Central grey caudal areaipsicCG3
Central gray dorsolateral partipsiCGDL2
Lateral periaqueductal grayipsiLPAG1
Superior colliculusipsiSC3
Dorsal tegmental bundleipsidtg-2
Peduncularpontine nucleusipsiPPN2
Substantia nigra compact partipsiSNC3
Substantia nigra lateral partipsiSNL0.5
Substantia nigra reticular partipsiSNR4
Ventral tegmental area A10ipsiVTA3
Laterodorsal tegmental nucleusipsiLDTg3
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC1
Dorsomedial tegmental areaipsiDMTg0.5
Prepositus nucleusipsiPr0.5
Mesencephalic reticular formationipsiMRF4
Pontine reticular nucleus oral partipsiPnO3
Pontine reticular nucleus ventral partipsiPnV1
Pontine reticular nucleus caudal partipsiPNC1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB4
Parabrachial nucleus medialipsiPBnMe2
Gigantocellular reticular nucleusipsiGi1
Gigantocellular reticular nucleus alpha partipsiGiA1
Gigantocellular reticular nucleus ventral partipsiGiV0.5
Medullary reticular nucleusipsiMdD1
Parvicellular reticular nucleusipsiPCRt1
Parvicellular reticular nucleus alpha partipsiPCRtA1
Subcoeruleus nucleus dorsal partipsiSubCD3
Subcoeruleus nucleus ventral partipsiSubCV1
Undefined pontine nucleusipsiPundef_L3
Nucleus of the solitary tract caudal partipsiSolca3
Dorsal raphe nucleus caudal partipsiDRC3
Dorsal raphe nucleus rostral partipsiDRr2
Dorsal raphe nucleus around siteipsiDRas4
Linear nucleus of the rapheipsiLIR1
Median raphe nucleusipsiMnR1
Paramedian raphe nucleusipsiPMnR3
Raphe magnus nucleusipsiRMg1
Raphe pallidus nucleusipsiRPa0.5
Dorsal paragigantocellular nucleusipsiDPGi2
Lateral paragigantocellular nucleusipsiLPGi2
Preoptic regionipsiPREO3
HypothalamusipsiHYPO3
Ventromedial hypothalamic nucleus central partipsiVMHC1
Ventromedial hypothalamic nucleus ventrolateral partipsiVMHVL1
Supramammillar nucleusipsiSuM2
Subbrachial nucleusipsiSubB1
Supraoculomotor capipsiSu3C1
Lateral habenular nucleusipsiLHb2
Lateral habenular nucleus lateral part magnocellular subnucleusipsiLHbLMc2
Lateral habenular nucleus medial partipsiLHbM2
Central tegmental fasciculusipsictf-2
Medial amygdaloid nucleusipsiMe2
Motoric regionsipsiM1
Medial prefrontal cortexipsimPFC4
Sensory regionsipsiSR1
Lateral orbital cortexipsiLO1.5
Medial orbital cortexipsiMO1.5
Ventromedial hypothalamic nucleus central partcontraVMHC1
Ventromedial hypothalamic nucleus ventrolateral partcontraVMHVL1

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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