University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Medial accumbens shell left


Abbreviation
AcbShm
Color       
Superior regionsAccumbens nucleus shell

SynonymsAbbr.Language
Medial part of accumbens shell Eng
Medial accumbens shellAcbShmEng

SubregionsSide
Medial accumbens shell lateral partleft
Medial accumbens shell posterodorsal regionleft
Medial accumbens shell ventrolateral partleft

Output to

NameSideAbbr.WeightDetails
Central gray lateral partipsiCGL-0.5
Ventrolateral periaqueductal grayipsiVLPAG1
Paracollicular tegmentumipsiPCTg-0.5
Substantia nigra A9ipsiSN2
Substantia nigra compact partipsiSNC3
Substantia nigra compact part dorsal tieripsiSNCD-0.5
Substantia nigra compact part medial tieripsiSNCM-0.5
Dorsal part of substantia nigra compact part medial tieripsiSNCMDo-0.5
Substantia nigra reticular partipsiSNR0
Ventral tegmental area A10ipsiVTA4
Ventral tegmental area A10 lateral partipsiVTAL-0.5
Ventral tegmental area A10 medial partipsiVTAM2
Ventral tegmental area A10 middle thirdipsiVTAmit-0.5
Retrorubral nucleusipsiRR-0.5
Middle part of the retrorubral fieldipsiRRmi1
Ventrolateral tegmental areaipsiVLTg-0.5
Dorsomedial tegmental areaipsiDMTg-0.5
Lateral preoptic areaipsiLPO-0.5
Juxtaparaventricular part [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPV-0.5
A8 dopamine cells retrorubral group lateral partipsiRRFL0
A8 dopamine cells retrorubral group medial partipsiRRFm3
Ventral pallidum dorsolateral partipsiVPdl-0.5
Ventral pallidum dorsomedial partipsiVPdm-0.5
Ventral pallidum medial partipsiVPm2
Ventral pallidum rostromedial partipsiVPrm3
Ventral pallidum ventral partipsiVPV-0.5
Ventral pallidum ventromedial partipsiVPvm-0.5
Interpeduncular nucleusipsiIP2
Ventral tegmental area A10 middle thirdcontraVTAmit-0.5

Input from

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG1
Peduncularpontine nucleus caudal levelsipsiPPNCa1
Substantia nigra compact partipsiSNC0
Substantia nigra compact part medial tieripsiSNCM2
Ventral tegmental area A10ipsiVTA3
Ventral tegmental area A10 lateral partipsiVTAL1
Interfascicular nucleusipsiIF3
Ventral tegmental tailipsiVTTa0.5
Parabrachial pigmented nucleusipsiPBP4
Medial parabrachial pigmented nucleusipsiPBPMe3
Paranigral nucleusipsiPN4
Caudal linear nucleus of the rapheipsiCLi3
Retrorubral nucleusipsiRR2
Laterodorsal tegmental nucleusipsiLDTg3
Pedunculopontine tegmental nucleusipsiPPTg1.5
Locus coeruleusipsiLC3
Parabrachial nucleusipsiPB-0.5
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Nucleus of the solitary tractipsiSol1
Dorsal raphe nucleusipsiDR2
Rostral linear nucleus of the rapheipsiRLi3
Median raphe nucleusipsiMnR2
Paramedian raphe nucleusipsiPMnR2
Pontine raphe nucleusipsiPnR2
Raphe magnus nucleusipsiRMg1
Caudal ventrolateral medullaipsiCVLM1
Region of tuber cinereumipsiTCReg1
Lateral hypothalamic area [Region of tuber cinereum]ipsiLHTUC2
Lateral hypothalamic areaipsiLH2
Posterior hypothalamic areaipsiPHA1
Arcuate nucleusipsiArc-0.5
Internuclear areaipsiInA-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Incerto hypothalamic areaipsiicHYPO-0.5
A8 dopamine cells retrorubral groupipsiRRF1
Perifornical nucleusipsiPeF-0.5
Central medial thalamic nucleusipsiCM-0.5
Paracentral thalamic nucleusipsiPC-0.5
Parafascicular thalamic nucleus medial partipsiPFM3
Retroparafascicular nucleusipsiRPF0.5
Mediodorsal thalamic nucleusipsiMD2
Paratenial thalamic nucleusipsiPT3
Paraventricular thalamic nucleusipsiPV1
Paraventricular thalamic nucleus anterior partipsiPVA2
Paraventricular thalamic nucleus rostrodorsal partipsiPVrd3
Paraventricular thalamic nucleus rostrocaudal extentipsiPVrce-0.5
Paraventricular thalamic nucleus dorsomedial aspectipsiPVdm-0.5
Medial segment of the mediolateral thalamic nucleusipsiMeLTmes-0.5
Accessory basal nucleusipsiAB2
Accessory basal nucleus caudal partipsiABcp-0.5
Accessory basal nucleus midrostrocaudal partipsiABmrcp-0.5
Accessory basal nucleus parvicellular divisionipsiABp1
Superficial accessory basal nucleusipsiABs1
Basal nucleus parvicellular partipsiBpc-1
Basal nucleus parvicellular part caudal regionipsiBpcc1
Basolateral amygdaloid nucleusipsiBL-0.5
Basomedial amygdaloid nucleusipsiBM2
Basomedial nucleus intermediate divisionipsiABi1
Basomedial nucleus magnocellular divisionipsiABmc2
Basomedial nucleus parvicellular divisionipsiABpc2
Basomedial nucleus parvicellular division caudal partipsiABpccp2
Caudal basal amygdaloid nucleusipsiBncc3
Superficial division of the basal nucleusipsiABsf1
Amygdalopiriform transition areaipsiAPir-1
Amygdalopiriform transition area anterolateral partipsiAPir_AL3
Amygdalopiriform transition area posteromedial partipsiAPir_PM-1
Amygdalohippocampal areaipsiAHi-0.5
Posteromedial cortical nucleusipsiPMCo-0.5
Intercalated nuclei of the amygdalaipsiI3
Ventral pallidum caudal partipsiVPc3
Ventral pallidum lateral partipsiVPlp3
Ventral pallidum rostromedial partipsiVPrm-0.5
Ventromedial subcommissural ventral pallidumipsiVPscvm3
Ventral pallidum ventromedial partipsiVPvm3
Subthalamic nucleus medial one-thirdipsiSThMot0
Field CA1 of hippocampusipsiCA1-0.5
SubiculumipsiS-0.5
Subiculum stratum pyramidaleipsiSupyr3
Subiculum ventral partipsiSv3
Pyramidal cell layer of the hippocampusipsiPy2
Temporal hippocampusipsiTempHipp3
Lateral entorhinal cortexipsiLEnt3
Medial entorhinal cortexipsiMEnt3
Ventral intermediate entorhinal cortexipsiVIEnt-0.5
Ventrolateral entorhinal cortexipsiVLENT-0.5
Ventrolateral entorhinal cortex layersipsiVLENTL-0.5
Piriform cortexipsiPir2
Rostral piriform cortexipsiPirR0.5
Cingulate cortex area 1 caudal partipsiCg1c0.5
Cingulate cortex area 2 caudal partipsiCg2c0.5
Prelimbic cortex dorsal partipsiPrLd0.5
Prelimbic cortex ventral partipsiPrLv1.5
Infralimbic cortexipsiIL3
Ventral limbic areaipsiVLA1.5
Frontal cortex area 2ipsiFr20.5
Agranular insular cortex posterior partipsiAIP1.5
Dorsal peduncular cortexipsiDP3
Medial prefrontal cortex ventral partipsimPFCV3
Lateral septal nucleus dorsal partipsiLSD3
Lateral septal nucleus intermediate partipsiLSI1
Lateral septal nucleus ventral partipsiLSV1
Pedunculopontine tegmental nucleuscontraPPTg1
Locus coeruleuscontraLC3
Parabrachial nucleuscontraPB-0.5
Lateral parabrachial nucleuscontraLPB1
Parabrachial nucleus medialcontraPBnMe1
Dorsal raphe nucleuscontraDR2
Lateral hypothalamic area [Region of tuber cinereum]contraLHTUC2
Lateral hypothalamic areacontraLH2
Basomedial nucleus intermediate divisioncontraABi1
Medial prefrontal cortex ventral partcontramPFCV2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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