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Rat connectome



Paraventricular hypothalamic nucleus magnocellular division left


Abbreviation
PaMag
Color       
Superior regionsParaventricular hypothalamic nucleus

SynonymsAbbr.Language
Paraventricular hypothalamic nucleus magnocellular divisionPaMag 
Magnocellular division of paraventricular hypothalamic nucleus Eng
Hypothalamic paraventricular nucleus magnocellular partPaMEng
Magnocellular areas of paraventricular hypothalamic nucleus Eng

SubregionsSide
Paraventricular hypothalamic nucleus caudal part of the magnocellular divisionleft
Paraventricular hypothalamic nucleus magnocellular division between PaLM and PaAMmleft
Paraventricular hypothalamic nucleus magnocellular division posterior partleft
Paraventricular hypothalamic nucleus magnocellular division rostral anterior partleft
Paraventricular hypothalamic nucleus magnocellular lateral partleft
Paraventricular hypothalamic nucleus magnocellular vasopressin and oxytocin neuronsleft
Paraventricular hypothalamic nucleus magnocellular division medial partleft
Paraventricular hypothalamic nucleus anterior magnocellular divisionleft

Output to

NameSideAbbr.WeightDetails
Central gray mesencephalic partipsiCGM2
Nuclei of the lateral lemniscusipsiNLL1
Substantia nigra compact partipsiSNC-0.5
Interfascicular nucleusipsiIF1
Pedunculopontine tegmental nucleusipsiPPTg1
Edinger Westphal nucleusipsiEW1
Locus coeruleusipsiLC3
Dorsal reticular formationipsiDRF-0.5
Parabrachial nucleusipsiPB1
Parabrachial nucleus external divison lateral partipsiPBeDL2
Medial parabrachial nucleus external partipsiMPBE2
Lateral reticular nucleusipsiLRt0
Subcoeruleus nucleusipsiSubC3
Ambiguus nucleusipsiAmb0.5
Area postremaipsiAP0
Spinal trigeminal nucleusipsiSp5nc1
Nucleus of the solitary tractipsiSol1
Nucleus of the solitary tract commissural partipsiSolC0.5
Nucleus of the solitary tract medial partipsiSolM0.5
Nucleus of the solitary tract adjacent to the nucleus nervi vagiipsiSola103
Dorsal motor nucleus of vagusipsi103
Dorsal raphe nucleusipsiDR1
Rostral linear nucleus of the rapheipsiRLi1
Median raphe nucleusipsiMnR1
Raphe magnus nucleusipsiRMg1
Raphe pallidus nucleusipsiRPa1
Raphe pallidus nucleus rostral partipsiRParo0.5
Ventral lateral medulla oblongataipsiMVL0.5
GracileipsiGra-0.5
Lateral paragigantocellular nucleusipsiLPGi1
Median eminenceipsiME4
Internal zone of the median eminenceipsiiZME-0.5
Magnocellular subdivision of median eminenceipsiMagME-0.5
Median eminence external layeripsiMEeL-0.5
Neurohemal zone of the median eminenceipsinzME-0.5
Median eminence middle portion subependymal layeripsiMEmise-0.5
Circumventricular organsipsiCIRC-0.5
Medial division of the hypothalamusipsiMdH1
Ventromedial hypothalamic nucleusipsiVMH-0.5
Mediobasal hypothalamus anterior partipsiMeHypoAnt0.5
Mediobasal hypothalamus posterior partipsiMeHypoP1
Arcuate nucleusipsiArc3
Paraventricular hypothalamic nucleusipsiPa1
Suprachiasmatic nucleusipsiSCh3
Dorsochiasmatic area medial partipsiDRChme2.5
Lateral habenular nucleus medial partipsiLHbM3
Pituitary glandipsiPIT3
Intermediate lobe of pituitaryipsiIPit3
Posterior lobe of pituitaryipsiPPit4
Bed nucleus of the stria terminalis caudal part caudoventral regionipsiBSTCacv2
Bed nucleus of the stria terminalis caudal part perifornical regionipsiBSTCapf2
Bed nucleus of the stria terminalis lateral divisionipsiBSTL3
Bed nucleus of the stria terminalis medial divisionipsiBSTM3
Field CA2 of hippocampus ventral partipsiCA2V-0.5
Lateral septal nucleus rostral partipsiLSr-0.5
Spinal cordipsiMES0.5
Intermediolateral cell column C1ipsiIMLC10
Area X C1ipsiSCL10C10
Spinal cord layer 5 C1ipsiSCL5C10
Spinal cord layer 1 C1ipsiSCL1C11
Cervical segment 2ipsiCS2-0.5
Intermediolateral cell column C2ipsiIMLC20
Area X C2ipsiSCL10C20
Spinal cord layer 5 C2ipsiSCL5C20
Spinal cord layer 1 C2ipsiSCL1C21
Intermediolateral cell column C3ipsiIMLC30
Area X C3ipsiSCL10C30
Spinal cord layer 5 C3ipsiSCL5C30
Spinal cord layer 1 C3ipsiSCL1C31
Intermediolateral cell column C4ipsiIMLC40
Area X C4ipsiSCL10C40
Spinal cord layer 5 C4ipsiSCL5C40
Spinal cord layer 1 C4ipsiSCL1C41
Intermediolateral cell column C5ipsiIMLC50
Area X C5ipsiSCL10C50
Spinal cord layer 5 C5ipsiSCL5C50
Spinal cord layer 1 C5ipsiSCL1C51
Intermediolateral cell column C6ipsiIMLC60
Area X C6ipsiSCL10C60
Spinal cord layer 5 C6ipsiSCL5C60
Spinal cord layer 1 C6ipsiSCL1C61
Intermediolateral cell column C7ipsiIMLC70
Area X C7ipsiSCL10C70
Spinal cord layer 5 C7ipsiSCL5C70
Spinal cord layer 1 C7ipsiSCL1C71
Intermediolateral cell column C8ipsiIMLC80
Area X C8ipsiSCL10C80
Spinal cord layer 5 C8ipsiSCL5C80
Spinal cord layer 1 C8ipsiSCL1C81
Thoracal segment 1ipsiT11
Intermediolateral cell column T1ipsiIMLT10
Spinal cord layers T1ipsiSCLT12
Area X T1ipsiSCL10T10
Spinal cord layer 5 T1ipsiSCL5T10
Spinal cord layer 1 T1ipsiSCL1T11
Thoracal segment 2ipsiT21
Intermediolateral cell column T2ipsiIMLT20
Spinal cord layers T2ipsiSCLT21
Area X T2ipsiSCL10T20
Spinal cord layer 5 T2ipsiSCL5T20
Spinal cord layer 1 T2ipsiSCL1T21
Thoracal segment 3ipsiT31
Intermediolateral cell column T3ipsiIMLT30
Area X T3ipsiSCL10T30
Spinal cord layer 5 T3ipsiSCL5T30
Spinal cord layer 1 T3ipsiSCL1T31
Thoracal segment 4ipsiT41
Intermediolateral cell column T4ipsiIMLT40
Area X T4ipsiSCL10T40
Spinal cord layer 5 T4ipsiSCL5T40
Spinal cord layer 1 T4ipsiSCL1T41
Thoracal segment 5ipsiT51
Intermediolateral cell column T5ipsiIMLT50
Area X T5ipsiSCL10T50
Spinal cord layer 5 T5ipsiSCL5T50
Spinal cord layer 1 T5ipsiSCL1T51
Thoracal segment 6ipsiT61
Intermediolateral cell column T6ipsiIMLT60
Area X T6ipsiSCL10T60
Spinal cord layer 5 T6ipsiSCL5T60
Spinal cord layer 1 T6ipsiSCL1T61
Thoracal segment 7ipsiT71
Intermediolateral cell column T7ipsiIMLT70
Area X T7ipsiSCL10T70
Spinal cord layer 5 T7ipsiSCL5T70
Spinal cord layer 1 T7ipsiSCL1T71
Thoracal segment 8ipsiT81
Intermediolateral cell column T8ipsiIMLT80
Area X T8ipsiSCL10T80
Spinal cord layer 5 T8ipsiSCL5T80
Spinal cord layer 1 T8ipsiSCL1T81
Thoracal segment 9ipsiT91
Intermediolateral cell column T9ipsiIMLT90
Area X T9ipsiSCL10T90
Spinal cord layer 5 T9ipsiSCL5T90
Spinal cord layer 1 T9ipsiSCL1T91
Thoracal segment 10ipsiT101
Intermediolateral cell column T10ipsiIMLT100
Area X T10ipsiSCL10T100
Spinal cord layer 5 T10ipsiSCL5T100
Spinal cord layer 1 T10ipsiSCL1T101
Thoracal segment 11ipsiT111
Intermediolateral cell column T11ipsiIMLT110
Area X T11ipsiSCL10T110
Spinal cord layer 5 T11ipsiSCL5T110
Spinal cord layer 1 T11ipsiSCL1T111
Thoracal segment 12ipsiT121
Intermediolateral cell column T12ipsiIMLT120
Area X T12ipsiSCL10T120
Spinal cord layer 5 T12ipsiSCL5T120
Spinal cord layer 1 T12ipsiSCL1T121
Thoracal segment 13ipsiT131
Intermediolateral cell column T13ipsiIMLT130
Area X T13ipsiSCL10T130
Spinal cord layer 5 T13ipsiSCL5T130
Spinal cord layer 1 T13ipsiSCL1T131
Lumbar segment 1ipsiL11
Intermediolateral cell column L1ipsiIMLL10
Area X L1ipsiSCL10L10
Spinal cord layer 5 L1ipsiSCL5L10
Spinal cord layer 1 L1ipsiSCL1L11
Lumbar segment 2ipsiL21
Intermediolateral cell column L2ipsiIMLL20
Area X L2ipsiSCL10L20
Spinal cord layer 5 L2ipsiSCL5L20
Spinal cord layer 1 L2ipsiSCL1L21
Lumbar segment 3ipsiL31
Intermediolateral cell column L3ipsiIMLL30
Area X L3ipsiSCL10L30
Spinal cord layer 5 L3ipsiSCL5L30
Spinal cord layer 1 L3ipsiSCL1L31
Lumbar segment 4ipsiL41
Intermediolateral cell column L4ipsiIMLL40
Area X L4ipsiSCL10L40
Spinal cord layer 5 L4ipsiSCL5L40
Spinal cord layer 1 L4ipsiSCL1L41
Lumbar segment 5ipsiL51
Intermediolateral cell column L5ipsiIMLL50
Area X L5ipsiSCL10L50
Spinal cord layer 5 L5ipsiSCL5L50
Spinal cord layer 1 L5ipsiSCL1L51
Lumbar segment 6ipsiL61
Intermediolateral cell column L6ipsiIMLL60
Area X L6ipsiSCL10L60
Spinal cord layer 5 L6ipsiSCL5L60
Spinal cord layer 1 L6ipsiSCL1L61
Intermediolateral cell column S1ipsiIMLS10
Area X S1ipsiSCL10S10
Spinal cord layer 5 S1ipsiSCL5S10
Spinal cord layer 1 S1ipsiSCL1S11
Intermediolateral cell column S2ipsiIMLS20
Area X S2ipsiSCL10S20
Spinal cord layer 5 S2ipsiSCL5S20
Spinal cord layer 1 S2ipsiSCL1S21
Intermediolateral cell column S3ipsiIMLS30
Area X S3ipsiSCL10S30
Spinal cord layer 5 S3ipsiSCL5S30
Spinal cord layer 1 S3ipsiSCL1S31
Sacral segment 4ipsiSa4-0.5
Intermediolateral cell column S4ipsiIMLS40
Area X S4ipsiSCL10S40
Spinal cord layer 5 S4ipsiSCL5S40
Spinal cord layer 1 S4ipsiSCL1S41
Intermediolateral cell column Co1ipsiIMLCo10
Intermediolateral cell column Co2ipsiIMLCo20
Intermediolateral cell column Co3ipsiIMLCo30
Nucleus of the solitary tractcontraSol0.5
Nucleus of the solitary tract medial partcontraSolM0.5
Nucleus of the solitary tract adjacent to the nucleus nervi vagicontraSola103
Dorsal motor nucleus of vaguscontra103
Ventral lateral medulla oblongatacontraMVL0.5
Arcuate nucleuscontraArc1
Paraventricular hypothalamic nucleuscontraPa0.5
Bed nucleus of the stria terminalis lateral divisioncontraBSTL-0.5
Bed nucleus of the stria terminalis medial divisioncontraBSTM-0.5
Lateral septal nucleus rostral partcontraLSr-0.5
Genioglossus muscleipsiMuscGenioG-0.5
Femoral bone marrowipsiOrgSkFemM2
OvaryipsiOrgOvar-10
KidneyipsiOrgsKid-0.5
Genioglossus musclecontraMuscGenioG-0.5
Femoral bone marrowcontraOrgSkFemM-0.5
KidneycontraOrgsKid-0.5

Input from

NameSideAbbr.WeightDetails
Locus coeruleusipsiLC0.5
Locus coeruleus middle partipsiLCmi-0.5
Pericoerulear regionipsiPCR0.5
Parabrachial nucleusipsiPB1
Parabrachial nucleus external divison lateral partipsiPBeDL-0.5
Medial parabrachial nucleus external partipsiMPBE-0.5
Lateral reticular nucleusipsiLRt1
Medullary reticular nucleusipsiMdD1
Subcoeruleus nucleusipsiSubC-0.5
C1 adrenaline cellsipsiC11
C2 adrenaline cellsipsiC21
C3 adrenaline cellsipsiC31
Area postremaipsiAP1
Nucleus of the solitary tractipsiSol3
Caudal nucleus of the solitary tract medial partipsiSolcame2
Nucleus of the solitary tract commissural partipsiSolC1
Nucleus of the solitary tract medial partipsiSolM2
Ventral lateral medulla oblongataipsiMVL3
Caudal ventrolateral medullaipsiCVLM1
A1 noradrenergic cellsipsiA13
A2 noradrenergic cellsipsiA22.5
Lateral paragigantocellular nucleusipsiLPGi1
Diagonal band of BrocaipsiDBB-0.5
Substantia innominataipsiSI1
Lateral preoptic areaipsiLPO1
Medial preoptic areaipsiMPA1
Medial preoptic area dorsolateral partipsiMPADL2
Medial preoptic nucleusipsiMPO3
Median preoptic nucleusipsiMnPO2
Ventral part of the median preoptic nucleusipsiMnPOV-0.5
Vascular organ of the lamina terminalisipsiVOLT2
Dorsomedial hypothalamic nucleusipsiDMHy2
Caudal part of the dorsomedial hypothalamic nucleusipsiDMHyC1
Anterior hypothalamic areaipsiAHA1
Anteroventral periventricular nucleus [Anterior hypothalamic area]ipsiAVPe1
Anterior hypothalamic nucleusipsiAHn-2
Dorsal hypothalamic area ventral partipsiDAv-0.5
Nucleus circularisipsiNC-0.5
Parastriatal nucleusipsiPS4
Subparaventricular zone ventral partipsiSuPZv2
Subparaventricular zone dorsomedial partipsiSuPZdm2
Ventromedial hypothalamic nucleusipsiVMH1
Arcuate nucleusipsiArc1
Arcuate nucleus medial partipsiArcM3
Arcuate nucleus ventrolateral partipsiArcVL-0.5
Arcuate nucleus ventromedial partipsiArcVM-0.5
Arcuate nucleus dorsomedial partipsiArcdm-0.5
Paraventricular nucleus of the hypothalamus magnocellular division anterior magnocellular partipsiPaAMa-0.5
Paraventricular hypothalamic nucleusipsiPa2
Periventricular hypothalamic nucleusipsiPe-0.5
Preoptic periventricular nucleusipsiPePO-2
Suprachiasmatic nucleusipsiSCh0.5
Supraoptic nucleus [Supraoptic region]ipsiSO-0.5
Premammillary nucleus dorsal partipsiPMD-0.5
Premammillary nucleus ventral partipsiPMV-0.5
Perifornical nucleusipsiPeF1
Retrochiasmatic areaipsiRCh2
Dorsochiasmatic areaipsiDRCh1
Paraventricular thalamic nucleusipsiPV-0.5
Subfornical organipsiSFO2
Dorsolateral part of the subfornical organipsiSFODL-0.5
Basolateral amygdaloid nucleusipsiBL0
Bed nucleus of the stria terminalisipsiBST1
Bed nucleus of the stria terminalis anterior divisionipsiBSTA2
Bed nucleus of the stria terminalis fusiform partipsiFu1
Bed nucleus of the stria terminalis dorsomedial partipsiBSTDoM1
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV3
Bed nucleus of the stria terminalis ventral tipipsiBNSTvt2
Central amygdaloid nucleusipsiCe3
Medial amygdaloid nucleusipsiMe1
Medial amygdaloid nucleus anterior partipsiMeAn1
Medial amygdaloid nucleus posterior partipsiMePo-0.5
Subiculum ventral partipsiSv3
Lateral septal nucleus ventral partipsiLSV1
Locus coeruleuscontraLC1
C1 adrenaline cellscontraC1-0.5
Nucleus of the solitary tractcontraSol1
Nucleus of the solitary tract medial partcontraSolM-0.5
Ventral lateral medulla oblongatacontraMVL0.5
Caudal ventrolateral medullacontraCVLM-0.5
A1 noradrenergic cellscontraA1-0.5
A2 noradrenergic cellscontraA2-0.5
Dorsomedial hypothalamic nucleuscontraDMHy0
Caudal part of the dorsomedial hypothalamic nucleuscontraDMHyC1
Ventromedial subfornical organcontraSFOVM-0.5
Bed nucleus of the stria terminaliscontraBST0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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