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Rat connectome



Periventricular gray matter left


Abbreviation
PVG
Color       
Superior regionsMesencephalon

SynonymsAbbr.Language
Periventricular grey Eng
Periventricular gray substance Eng
Periventricular gray  
Periventricular gray matterPVGEng

SubregionsSide
Periventricular gray substance ventrolateral partleft
Ventral portion of the periventricular grayleft
Lateral part of the ventricular grayleft
Rostral medullary periventricular grayleft
Periventricular gray anterior partleft

Output to

NameSideAbbr.WeightDetails
Rostral interstitial nucleus of medial longitudinal fasciculusipsiRI0
Dorsolateral periaqueductal grayipsiDLPAG1
Ventral periaqueductal grayipsiVPAG2
Periventricular gray matteripsiPVG1
Ventral tegmental area A10ipsiVTA2
Dorsal tegmental nucleusipsiDTg1
Gigantocellular reticular nucleusipsiGi1
Gigantocellular reticular nucleus ventral partipsiGiV1
Dorsal raphe nucleusipsiDR3
Median raphe nucleusipsiMnR2
Pontine raphe nucleusipsiPnR0
Raphe magnus nucleusipsiRMg2
Raphe obscurus nucleusipsiROb1
Raphe pallidus nucleusipsiRPa1
Nucleus interfascicularis hypoglossiipsiNIFH-0.5
Olivary nucleusipsiON-0.5
Inferior oliveipsiIO4
Basal forebrainipsiBAF0.5
Diagonal band of BrocaipsiDBB2
Nucleus of the horizontal limb of the diagonal bandipsiHDB3
Nucleus of the vertical limb of the diagonal bandipsiVDB3
Medial septal nucleusipsiMS3
Substantia innominata anterior partipsiSIA2
Substantia innominata posterior partipsiSIP3
Magnocellular preoptic nucleusipsiMCPO3
Medial preoptic nucleusipsiMPO2
Lateral hypothalamic areaipsiLH1
Anterior hypothalamic nucleusipsiAHn1
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1.5
Posterior hypothalamic nucleusipsiPH1
Medial basal hypothalamusipsiMBH3
Ventromedial hypothalamic nucleusipsiVMH0
Arcuate nucleusipsiArc0
Paraventricular nucleus of the hypothalamus magnocellular division medial magnocellular partipsiPaAMm1
Paraventricular hypothalamic nucleus lateral magnocellular part [Periventricular zone anterior region]ipsiPaLM1
Paraventricular hypothalamic nucleus medial parvicellular part [Periventricular zone anterior region]ipsiPaMP1
Paraventricular hypothalamic nucleus anterior parvicellular part [Periventricular zone anterior region]ipsiPaAP1
Paraventricular hypothalamic nucleusipsiPa-0.5
Paraventricular hypothalamic nucleus dorsomedial capipsiPadmc1
Paraventricular hypothalamic nucleus magnocellular division between PaLM and PaAMmipsiPaMagb1
Paraventricular hypothalamic nucleus parvocellular division posterior partipsiPavPoP1
Ventral perinuclear paraventricular hypothalamic areaipsiPPaV1
Suprachiasmatic nucleusipsiSCh2
Supraoptic nucleus dorsal partipsiSOd-0.5
Supraoptic nucleus ventral part [Supraoptic region]ipsiSOV1
Lateral mammillary nucleusipsiLM0
Medial mammillary nucleusipsiMMn0
Supramammillar nucleus lateral partipsiSuML0
Supramammillar nucleus medial partipsiSuMM0
Anterodorsal thalamic nucleusipsiAD1
Anteromedial thalamic nucleusipsiAM0
Anteroventral thalamic nucleusipsiAV0
Central medial thalamic nucleusipsiCM-0.5
Midline in the central medial thalamic nucleusipsiCMmi-0.5
Centre median nucleusipsiCeMe0
Centrolateral thalamic nucleusipsiCL0
Paracentral thalamic nucleusipsiPC0
Parafascicular thalamic nucleusipsiPF1.5
Rhomboid thalamic nucleusipsiRh1.5
Mediodorsal thalamic nucleusipsiMD-0.5
Intermediodorsal thalamic nucleusipsiIMD-0.5
Mediodorsal thalamic nucleus lateral partipsiMDL1.5
Mediodorsal thalamic nucleus medial partipsiMDM0
Submedius thalamic nucleusipsiSub0
Paratenial thalamic nucleusipsiPT0
Paraventricular thalamic nucleusipsiPV1
Reuniens thalamic nucleusipsiRe1
Subfascicular nucleusipsiSFN1.5
Ventrolateral thalamic nucleusipsiVL0
Ventrobasal complexipsiVB0
Ventromedial thalamic nucleusipsiVM0
Parafascicular centre-median complexipsiPFCM1
Lateral posterior thalamic nucleusipsiLP0
Laterodorsal thalamic nucleusipsiLD0
Posteromedial thalamic nucleusipsiPMTN1
Reticular thalamic nucleusipsiRt0
Subparafascicular thalamic nucleusipsiSPF0
Zona incertaipsiZI3
Forel field H1ipsiFFH10
Forel field H2ipsiFFH20
Lateral habenular nucleusipsiLHb-0.5
Medial habenular nucleusipsiMHb0
Pretectal regionipsiPRT1.5
Basolateral amygdaloid nucleusipsiBL1
Lateral amygdaloid nucleusipsiLA-0.5
Bed nucleus of the stria terminalisipsiBST0.5
Bed nucleus of the stria terminalis intraamygdaloid divisionipsiBSTIA2.5
Bed nucleus of the stria terminalis lateral division ventral partipsiBSTLV-0.5
Central amygdaloid nucleusipsiCe0.5
Central amygdaloid nucleus ventral partipsiCeV-0.5
Interstitial nucleus of the posterior limb of the anterior commissureipsiIPAC0.5
Sublenticular extended amygdalaipsiSLEA2
Medial amygdaloid nucleusipsiMe-0.5
Globus pallidusipsiGP1
Accumbens nucleus shellipsiAcbSh0.5
Subthalamic nucleusipsiSTh1
Nucleus of the posterior commissureipsiPCom1
Dorsal geniculate nucleus lateral partipsiDLGl0
Intergeniculate leafipsiIGL0
Ventral lateral geniculate nucleusipsiVLG0
Medial geniculate nucleusipsiMG0
Olfactory bulb A16ipsiMOB3
Septal regionipsiSER-0.5
Lateral septal nucleus rostral partipsiLSr1
Caudal septumipsiCSER-0.5
Thoracal segment 1ipsiT13
Thoracal segment 2ipsiT23
Intermediolateral cell column T2ipsiIMLT2-0.5
Thoracal segment 3ipsiT33
Intermediolateral cell column T3ipsiIMLT3-0.5
Thoracal segment 4ipsiT43
Intermediolateral cell column T7ipsiIMLT7-0.5
Intermediolateral cell column T8ipsiIMLT8-0.5
Intermediolateral cell column T9ipsiIMLT9-0.5
Intermediolateral cell column T11ipsiIMLT11-0.5
Intermediolateral cell column T12ipsiIMLT12-0.5
Intermediolateral cell column T13ipsiIMLT13-0.5
Intermediolateral cell column L1ipsiIMLL1-0.5
Spinal trigeminal nucleus interpolar partcontraSp5I-0.5
Basal forebraincontraBAF0.5
Medial preoptic nucleuscontraMPO-0.5
Lateral hypothalamic areacontraLH-0.5
Supraoptic nucleus dorsal partcontraSOd-0.5
Supraoptic nucleus ventral part [Supraoptic region]contraSOV-0.5
Basolateral amygdaloid nucleuscontraBL1
Precommissural nucleuscontraPrC3
Submandibular glandipsiOrgsSubg-10
Posterior cricoarytenoid muscleipsiMuscPCA-0.5
Submandibular glandcontraOrgsSubg-10

Input from

NameSideAbbr.WeightDetails
Rostral interstitial nucleus of medial longitudinal fasciculusipsiRI0
Dorsolateral periaqueductal grayipsiDLPAG-0.5
Dorsolateral periaqueductal gray caudal partipsiPAGdlc-3
Ventral periaqueductal grayipsiVPAG2
Ventrolateral periaqueductal grayipsiVLPAG-0.5
Ventrolateral periaqueductal gray caudal partipsiPAGvlc2
Periventricular gray matteripsiPVG1
Dorsal tegmental nucleusipsiDTg1
Lateral cerebellar nucleusipsiCERL-0.5
Locus coeruleusipsiLC-2
Prelocus coeruleus nucleusipsiPLC-2
Mesencephalic reticular formationipsiMRF-0.5
Parabrachial nucleus medialipsiPBnMe-2
Parabrachial nucleus waist partipsiPBW-2
Gigantocellular reticular nucleusipsiGi2
Gigantocellular reticular nucleus alpha partipsiGiA-0.5
Mesencephalic trigeminal nucleusipsiMe5-2
Medial vestibular nucleus dorsal partipsiMVeD-0.5
Ventral inferior vestibular nucleusipsiVIVN-0.5
Nucleus of the solitary tract commissural partipsiSolC-0.5
Dorsal raphe nucleusipsiDR1
Dorsal raphe nucleus caudal partipsiDRC2
Dorsal raphe nucleus rostral partipsiDRr2
Median raphe nucleusipsiMnR-0.5
Pontine raphe nucleusipsiPnR0
Raphe magnus nucleusipsiRMg-0.5
A1 noradrenergic cellsipsiA1-0.5
Cuneate nucleusipsiCu-0.5
Gracile nucleus principal partipsiGr2
Medial preoptic nucleusipsiMPO1
Lateral hypothalamic areaipsiLH2
Anterior hypothalamic nucleusipsiAHn0
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM2
Posterior hypothalamic nucleusipsiPH2
Subparaventricular zone ventral partipsiSuPZv2
Ventromedial hypothalamic nucleusipsiVMH0
Arcuate nucleusipsiArc-0.5
Paraventricular hypothalamic nucleusipsiPa0
Lateral mammillary nucleusipsiLM2
Medial mammillary nucleusipsiMMn0
Supramammillar nucleus lateral partipsiSuML2
Supramammillar nucleus medial partipsiSuMM0
Subfascicular nucleusipsiSFN2
Zona incertaipsiZI2
Forel field H1ipsiFFH10
Forel field H2ipsiFFH20
HabenulaipsiHAB2
Medial terminal nucleus of the accessory optic tractipsiMT1.5
Central amygdaloid nucleus lateral divisionipsiCeL1
Central amygdaloid nucleus medial division rostral partipsiCeMR2
Anterior cingulate cortexipsiACC1.5
Frontal cortex area 2ipsiFr21.5
Medial agranular prefrontal cortexipsiAGm1.5
Nucleus of the posterior commissureipsiPCom2
Precommissural nucleusipsiPrC-2
Intergeniculate leafipsiIGL0
Spinal trigeminal nucleus interpolar partcontraSp5I-0.5
Spinal trigeminal nucleus oral partcontraSp5O-0.5
Medial preoptic nucleuscontraMPO-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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