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Rat connectome



Spinal cord layer 4 L5 left


Abbreviation
SCL4L5
Color       
Superior regionsNucleus proprius L5

SynonymsAbbr.Language
Spinal cord layer 4 L5SCL4L5Eng

SubregionsSide
Intermediate portion of spinal cord layer 4 L5left
Medial portion spinal cord layer 4 L5left
Central part of SCL4L5 to medial part of SCL5L5left
Central part of SCL4L5 to medial part of SCL6L5left
Central part of the spinal cord layer 4 L5left

Output to

NameSideAbbr.WeightDetails
Periaqueductal grayipsiPAG-0.5
Dorsal periaqueductal grayipsiDPAG1
Dorsolateral periaqueductal grayipsiDLPAG1
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray lateroventral partipsiPAGLV0.5
Ventrolateral periaqueductal grayipsiVLPAG1.5
Ventral part of the medial reticular formationipsiRFmV-0.5
Cuneiforme nucleusipsiCnF1.5
Parabrachial nucleusipsiPB1.5
Lateral parabrachial nucleusipsiLPB1
Lateral parabrachial nucleus internal partipsiLPBI2
Lateral parabrachial nucleus lateral partipsiLPBL0
Parabrachial nucleus central lateral partipsiPBCeL0
Parabrachial nucleus dorsolateral partipsiPBDL0
Parabrachial nucleus superior lateralipsiPBSL0
Caudal bulbar reticular formationipsiCBRF-0.5
Gigantocellular reticular nucleusipsiGi2
Lateral reticular nucleusipsiLRt2
Medullary reticular nucleusipsiMdD-0.5
Subnucleus reticularis dorsalisipsiSRD2
Medullary reticular nucleus dorsal partipsiMdDd3
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd1
Parvicellular reticular nucleusipsiPCRt-0.5
Spinal vestibular nucleusipsiSpVe-0.5
Nucleus of the solitary tractipsiSol4
Nucleus of the solitary tract commissural partipsiSolC-0.5
Nucleus of the solitary tract lateral partipsiSolL3
Nucleus of the solitary tract medial partipsiSolM2
Caudal ventrolateral medullaipsiCVLM1
Rostral ventrolateral medullaipsiRVLM1
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA20.5
Dorsal column nucleiipsiDCN3
Cuneate nucleusipsiCu-0.5
GracileipsiGra-0.5
Gracile nucleus lemniscal neuronsipsiGraLem-0.5
Gracile nucleus principal partipsiGr-0.5
Lateral paragigantocellular nucleusipsiLPGi2
Dorsal regionipsiDHR-0.5
Lateral hypothalamic areaipsiLH1.5
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1.5
Posterior hypothalamic areaipsiPHA-0.5
Paraventricular hypothalamic nucleusipsiPa1.5
Suprachiasmatic nucleusipsiSCh1.5
Supraoptic nucleus [Supraoptic region]ipsiSO1.5
Centrolateral thalamic nucleusipsiCL1
Ventrolateral thalamic nucleusipsiVL1
Ventrobasal complexipsiVB1
Lateral thalamic nuclear groupipsiLTNG1
Posterior groupipsiPTG1
Lateral funiculusipsilf-2
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC-0.5
Basal gangliaipsiBG-0.5
Accumbens nucleusipsiAc1
Infralimbic cortexipsiIL-0.5
Medial orbital cortexipsiMO-0.5
Septal regionipsiSER1
Cervical segment 1ipsiCS13
Lateral cervical nucleus C1ipsiLatCC1-0.5
Ventral horn C1ipsiVHC11
Cervical segment 2ipsiCS23
Lateral cervical nucleus C2ipsiLatCC2-0.5
Ventral horn C2ipsiVHC21
Cervical segment 3ipsiCS33
Lateral cervical nucleus C3ipsiLatCC3-0.5
Ventral horn C3ipsiVHC31
Cervical segment 4ipsiCS43
Lateral cervical nucleus C4ipsiLatCC4-0.5
Cervical segment 5ipsiCS53
Cervical segment 6ipsiCS63
Cervical segment 7ipsiCS73
Cervical segment 8ipsiCS83
Thoracal segment 1ipsiT13
Thoracal segment 2ipsiT23
Thoracal segment 3ipsiT33
Thoracal segment 4ipsiT43
Thoracal segment 5ipsiT53
Thoracal segment 6ipsiT63
Thoracal segment 7ipsiT73
Thoracal segment 8ipsiT83
Thoracal segment 9ipsiT93
Thoracal segment 10ipsiT103
Thoracal segment 11ipsiT113
Thoracal segment 12ipsiT123
Thoracal segment 13ipsiT133
Lumbar segment 1ipsiL13
Lumbar segment 2ipsiL23
Lumbar segment 3ipsiL33
Dorsal root ganglion L3ipsiDRGL3-0.5
Interneuron groups of layer 9 L3ipsiiGL9L3-0.5
Motoneuron groups of layer 9 L3ipsiMGL9L3-0.5
Lumbar segment 4ipsiL43
Dorsal root ganglion L4ipsiDRGL4-0.5
Interneuron groups of layer 9 L4ipsiiGL9L4-0.5
Motoneuron groups of layer 9 L4ipsiMGL9L4-0.5
Lumbar segment 5ipsiL53
Dorsal root ganglion L5ipsiDRGL5-0.5
Interneuron groups of layer 9 L5ipsiiGL9L5-0.5
Motoneuron groups of layer 9 L5ipsiMGL9L5-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL51
Lumbar segment 6ipsiL63
Dorsal root ganglion L6ipsiDRGL6-0.5
Interneuron groups of layer 9 L6ipsiiGL9L6-0.5
Motoneuron groups of layer 9 L6ipsiMGL9L6-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL61
Sacral segment 1ipsiSa13
Interneuron groups of layer 9 S1ipsiiGL9S1-0.5
Motoneuron groups of layer 9 S1ipsiMGL9S1-0.5
Sacral segment 2ipsiSa23
Sacral segment 3ipsiSa33
Sacral segment 4ipsiSa43
Coccygeal segment 1ipsiCo13
Coccygeal segment 2ipsiCo23
MesencephaloncontraMEC0.5
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG-0.5
Dorsal periaqueductal graycontraDPAG3
Dorsolateral periaqueductal graycontraDLPAG3
Lateral periaqueductal graycontraLPAG3
Periaqueductal gray dorsal partcontraPAGd1
Periaqueductal gray lateroventral partcontraPAGLV1
Ventrolateral periaqueductal graycontraVLPAG2
Red nucleuscontraR-0.5
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Ventral part of the medial reticular formationcontraRFmV-0.5
Deep mesencephalic nucleuscontraDpMe1
Cuneiforme nucleuscontraCnF3
Parabrachial nucleuscontraPB2
Lateral parabrachial nucleuscontraLPB0.5
Lateral parabrachial nucleus lateral partcontraLPBL1
Parabrachial nucleus central lateral partcontraPBCeL1
Parabrachial nucleus dorsolateral partcontraPBDL1
Parabrachial nucleus superior lateralcontraPBSL1
Gigantocellular reticular nucleuscontraGi-0.5
Lateral reticular nucleuscontraLRt3
Caudolateral part of the lateral reticular nucleuscontraLRtCL1
Medullary reticular nucleuscontraMdD-0.5
Medullary reticular nucleus dorsal partcontraMdDd0.5
Parvicellular reticular nucleuscontraPCRt-0.5
Spinal vestibular nucleuscontraSpVe-0.5
Nucleus of the solitary tractcontraSol3
Nucleus of the solitary tract lateral partcontraSolL2
Nucleus of the solitary tract medial partcontraSolM2
Caudal ventrolateral medullacontraCVLM1
A1 noradrenergic cellscontraA13
A2 noradrenergic cellscontraA22
Dorsal column nucleicontraDCN0.5
Cuneate nucleuscontraCu-0.5
Gracile nucleus principal partcontraGr-0.5
Lateral paragigantocellular nucleuscontraLPGi-0.5
Paragigantocellular reticular nucleus medial partcontraPGiM-0.5
Lateral hypothalamic areacontraLH3
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
Centrolateral thalamic nucleuscontraCL3
Lateral group of the dorsal thalamuscontraLAT1.5
Posterior thalamic nuclear groupcontraPo2
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT2
Mediodorsal thalamic nucleuscontraMD2
Ventrolateral thalamic nucleuscontraVL3
Ventrobasal complexcontraVB3
Ventral posterolateral thalamic nucleuscontraVPL-0.5
Ventral posteromedial thalamic nucleuscontraVPM-0.5
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Lateral thalamic nuclear groupcontraLTNG3
Lateral posterior thalamic nucleuscontraLP-0.5
Posterior groupcontraPTG3
Pretectal regioncontraPRT-0.5
Anterior pretectal nucleuscontraAPT-0.5
Posterior pretectal nucleuscontraPPT-0.5
Dorsolateral funiculuscontradlft-2
Spinothalamic tractcontrastt-2
Accumbens nucleuscontraAc2
Septal regioncontraSER2
Cervical segment 1contraCS11
Ventral horn C1contraVHC11
Cervical segment 2contraCS21
Ventral horn C2contraVHC21
Cervical segment 3contraCS31
Ventral horn C3contraVHC31
Cervical segment 4contraCS41
Cervical segment 5contraCS51
Cervical segment 6contraCS61
Cervical segment 7contraCS71
Cervical segment 8contraCS81
Thoracal segment 1contraT11
Thoracal segment 2contraT21
Thoracal segment 3contraT31
Thoracal segment 4contraT41
Thoracal segment 5contraT51
Thoracal segment 6contraT61
Thoracal segment 7contraT71
Thoracal segment 8contraT81
Thoracal segment 9contraT91
Thoracal segment 10contraT101
Thoracal segment 11contraT111
Thoracal segment 12contraT121
Thoracal segment 13contraT131
Lumbar segment 1contraL11
Medial motoneuron groups of layer 9 L1contraMGL9L1m1
Lateral motoneuron groups of layer 9 L1contraMGL9L1L1
Lumbar segment 2contraL21
Lumbar segment 3contraL31
Medial motoneuron groups of layer 9 L3contraMGL9L3m1
Lateral motoneuron groups of layer 9 L3contraMGL9L3L1
Lumbar segment 4contraL41
Lumbar segment 5contraL51
Lumbar segment 6contraL61
Sacral segment 1contraSa13
Sacral segment 2contraSa23
Sacral segment 3contraSa33
Sacral segment 4contraSa43
Coccygeal segment 1contraCo13
Coccygeal segment 2contraCo23
Sciatic nerveipsisci3
CoripsiOrgsCor-0.5
StomachipsiOrgsStomS-1
Hindpaw skinipsiOrgHPS3
Tibialis anterior muscleipsiMuscTA-0.5
Soleus muscleipsiMuscSo-0.5
Bulbospongiosus muscleipsiMuscbsp1
Ischiocavernosus muscleipsiMuscicav-10
Bulbospongiosus musclecontraMuscbsp1

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Pedunculopontine tegmental nucleusipsiPPTg3
A5 noradrenaline cellsipsiA52
A5 noradrenaline cells caudal partipsiA5C2
A5 noradrenaline cells rostral partipsiA5R2
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Caudal part of ventral locus coeruleusipsiLCveca0.5
Ventrolateral reticular formationipsiVLRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi1
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd-0.5
Subcoeruleus nucleusipsiSubC3
Raphe magnus nucleusipsiRMg2
Rostral part of the ventromedial medulla oblongataipsiRMeObvm1
Lateral hypothalamic areaipsiLH1
A11 dopamine cellsipsiA11-0.5
Zona incertaipsiZI-0.5
Zona incerta medial partipsiZIm-0.5
Zona incerta rostromedial partipsiZIrm0
Somatomotoric regionsipsiSMR-0.5
Lateral agranular prefrontal cortexipsiAGl3
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Somatomotoric regions layer 5ipsiSMRL51
Area X C4ipsiSCL10C4-0.5
Spinal cord layer 5 C4ipsiSCL5C4-0.5
Spinal cord layer 4 C4ipsiSCL4C4-0.5
Spinal cord layer 7 C4ipsiSCL7C4-0.5
Spinal cord layer 8 C4ipsiSCL8C4-0.5
Area X C5ipsiSCL10C5-0.5
Spinal cord layer 5 C5ipsiSCL5C5-0.5
Spinal cord layer 4 C5ipsiSCL4C5-0.5
Spinal cord layer 7 C5ipsiSCL7C5-0.5
Spinal cord layer 8 C5ipsiSCL8C5-0.5
Area X C6ipsiSCL10C6-0.5
Spinal cord layer 5 C6ipsiSCL5C6-0.5
Spinal cord layer 4 C6ipsiSCL4C6-0.5
Spinal cord layer 7 C6ipsiSCL7C6-0.5
Spinal cord layer 8 C6ipsiSCL8C6-0.5
Area X T13ipsiSCL10T13-0.5
Spinal cord layer 5 T13ipsiSCL5T13-0.5
Spinal cord layer 6 T13ipsiSCL6T13-0.5
Spinal cord layer 3 T13ipsiSCL3T13-0.5
Spinal cord layer 4 T13ipsiSCL4T13-0.5
Spinal cord layer 1 T13ipsiSCL1T13-0.5
Spinal cord layer 2 T13ipsiSCL2T13-0.5
Spinal cord layer 7 T13ipsiSCL7T13-0.5
Spinal cord layer 8 T13ipsiSCL8T13-0.5
Dorsal root ganglion L1ipsiDRGL11
Dorsal root ganglion L2ipsiDRGL21
Spinal cord layer 3 L2ipsiSCL3L23
Spinal cord layer 4 L2ipsiSCL4L23
Spinal cord layer 1 L2ipsiSCL1L23
Spinal cord layer 2 L2ipsiSCL2L23
Dorsal root ganglion L3ipsiDRGL33
Spinal cord layer 3 L3ipsiSCL3L33
Spinal cord layer 4 L3ipsiSCL4L33
Spinal cord layer 1 L3ipsiSCL1L33
Spinal cord layer 2 L3ipsiSCL2L33
Dorsal root ganglion L4ipsiDRGL44
Spinal cord layer 3 L4ipsiSCL3L43
Spinal cord layer 4 L4ipsiSCL4L43
Spinal cord layer 1 L4ipsiSCL1L43
Spinal cord layer 2 L4ipsiSCL2L43
Dorsal root ganglion L5ipsiDRGL54
Dorsal root ganglion L6ipsiDRGL63
Pedunculopontine tegmental nucleuscontraPPTg3
A5 noradrenaline cellscontraA50.5
A5 noradrenaline cells caudal partcontraA5C1
A5 noradrenaline cells rostral partcontraA5R1
A7 noradrenaline cellscontraA70.5
Locus coeruleuscontraLC3
Caudal part of ventral locus coeruleuscontraLCveca0.5
Cuneiforme nucleuscontraCnF-2
Gigantocellular reticular nucleuscontraGi0.5
Nucleus interfascicularis hypoglossicontraNIFH1
Zona incerta medial partcontraZIm-0.5
Dorsolateral funiculuscontradlft-2
Frontal cortex area 2contraFr23
Parietal association cortexcontraPtA0.5
Insular cortexcontraICX0.5
Prefrontal cortexcontraPFC0.5
Lateral agranular prefrontal cortexcontraAGl3
Hindlimb motor cortexcontraHMCx3
Medial agranular prefrontal cortexcontraAGm3
Primary somatosensory cortexcontraS13
Secondary somatosensory cortexcontraS23
Somatomotoric regions layer 5contraSMRL51
Secondary visual cortexcontraV20.5
Spinal cord layer 3 L2contraSCL3L20.5
Spinal cord layer 4 L2contraSCL4L20.5
Spinal cord layer 2 L2contraSCL2L20.5
Spinal cord layer 3 L3contraSCL3L30.5
Spinal cord layer 4 L3contraSCL4L30.5
Spinal cord layer 2 L3contraSCL2L30.5
Spinal cord layer 3 L4contraSCL3L40.5
Spinal cord layer 4 L4contraSCL4L40.5
Spinal cord layer 2 L4contraSCL2L40.5
Dorsal root ganglion L5contraDRGL52
Femoral nerveipsifem1
Lateral femoral cutaneous nerveipsifemLC2
Peronal nerveipsiperonal3
Common peronal nerveipsicperonal-0.5
Saphenus nerveipsisaph1
Sural nerveipsisural-0.5
Anterior femoral cutaneous nerveipsiafem1
Hamstring nerveipsihamstri3
Pudendal nerveipsipude3
Ventral branch of the pudendal nerveipsipudeVb3
Saphenous nerveipsispn-0.5
Sciatic nerveipsisci3
Tibial nerveipsitibial-0.5
Obturator nerveipsiobturat2
Lateral plantar nerveipsilpn-0.5
Medial plantar nerveipsimpn-0.5
Pudendal nervecontrapude-0.5
Ventral branch of the pudendal nervecontrapudeVb-0.5
Hindpaw digitsipsiOrgHPD3
Hindpaw digit 1ipsiOrgHPD1-0.5
Hindpaw digit 2ipsiOrgHPD2-0.5
Hindpaw digit 4ipsiOrgHPD4-0.5
Hindpaw digit 5ipsiOrgHPD5-0.5
Hindpaw skinipsiOrgHPS3
Dorsal hindpaw skinipsiOrgHPSD-0.5
Biceps femoris muscleipsiMuscBF-0.5
Soleus muscleipsiMuscSo-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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