University of Rostock

Department of Anatomy

Neuroscience Group

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Rat connectome



Area X S1 left


Abbreviation
SCL10S1
Color       
Superior regionsSpinal cord layers S1

SynonymsAbbr.Language
Area X S1SCL10S1Eng
Rexed X S1SCL10S1Eng
Rexed 10 S1SCL10S1Eng
Lamina 10 S1SCL10S1Eng
Lamina X S1SCL10S1Eng
Spinal cord layer 10 S1SCL10S1Eng

SubregionsSide
Area X S1 dorsal partleft
Area X S1 ventral partleft
Dorsal grey commissure S1left

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC3
Central grayipsiCG-0.5
Periaqueductal grayipsiPAG0.5
Dorsal periaqueductal grayipsiDPAG1
Dorsolateral periaqueductal grayipsiDLPAG1
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray lateroventral partipsiPAGLV0.5
Ventrolateral periaqueductal grayipsiVLPAG0.5
Tegmental areaipsiTGA-0.5
Laterodorsal tegmental nucleusipsiLDTg-0.5
Anterior lobeipsiAnL1
Locus coeruleusipsiLC-0.5
Reticular systemipsiRF3
Cuneiforme nucleusipsiCnF-0.5
Parabrachial nucleusipsiPB2
Koelliker Fuse nucleusipsiKF-0.5
Lateral parabrachial nucleusipsiLPB3
Lateral parabrachial nucleus lateral partipsiLPBL0
Parabrachial nucleus central lateral partipsiPBCeL0
Parabrachial nucleus dorsolateral partipsiPBDL0
Parabrachial nucleus superior lateralipsiPBSL0
Gigantocellular reticular nucleusipsiGi-0.5
Lateral reticular nucleusipsiLRt3
Subnucleus reticularis dorsalisipsiSRD-0.5
Subnucleus reticularis ventralis medullae oblongataeipsiSRV-0.5
Subcoeruleus nucleusipsiSubC-0.5
Principal sensory trigeminal nucleus dorsolateral partipsiPr5DL-0.5
Nucleus of the solitary tractipsiSol3
Nucleus of the solitary tract caudal partipsiSolca-0.5
Nucleus of the solitary tract lateral partipsiSolL1
Nucleus of the solitary tract medial partipsiSolM1
Raphe pallidus nucleusipsiRPa1
A1 noradrenergic cellsipsiA13
Dorsal column nucleiipsiDCN-0.5
Cuneate nucleusipsiCu-0.5
GracileipsiGra1
Gracile nucleus principal partipsiGr-0.5
Lateral paragigantocellular nucleusipsiLPGi-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm2
Nucleus of the vertical limb of the diagonal bandipsiVDB-0.5
Medial septal nucleusipsiMS-0.5
HypothalamusipsiHYPO1
Preoptic anterior regionipsiPAreg2
Lateral hypothalamic areaipsiLH1.5
Medial division of the hypothalamusipsiMdH1
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1.5
Posterior hypothalamic areaipsiPHA1
Paraventricular hypothalamic nucleusipsiPa1.5
Suprachiasmatic nucleusipsiSCh1.5
Supraoptic nucleus [Supraoptic region]ipsiSO1.5
ThalamusipsiT3
Central medial thalamic nucleusipsiCM1
Centrolateral thalamic nucleusipsiCL1
Paracentral thalamic nucleusipsiPC1
Lateral group of the dorsal thalamusipsiLAT0
Ventrobasal complexipsiVB1
Ventral posterolateral thalamic nucleusipsiVPL-0.5
Ventral posteromedial thalamic nucleusipsiVPM-0.5
Intralaminar nucleiipsiILN1
Lateral posterior thalamic nucleusipsiLP1
Laterodorsal thalamic nucleusipsiLD1
Medial thalamic zoneipsiMTZ0
Posterior groupipsiPTG1
Dorsal columnipsidoco-2
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC-0.5
Central amygdaloid nucleusipsiCe0.5
Central amygdaloid nucleus anterior partipsiCeAn-0.5
Basal gangliaipsiBG-0.5
Globus pallidusipsiGP-0.5
Ventral pallidumipsiVP-0.5
Accumbens nucleusipsiAc1
Infralimbic cortexipsiIL-0.5
Medial orbital cortexipsiMO-0.5
Septal regionipsiSER1
Lateral septal nucleusipsiLS-0.5
Ventral horn C1ipsiVHC10.5
Ventral horn C2ipsiVHC20.5
Ventral horn C3ipsiVHC30.5
Area X C6ipsiSCL10C6-0.5
Area X C7ipsiSCL10C7-0.5
Spinal cord layer 9 C7ipsiSCL9C7-0.5
Area X T9ipsiSCL10T9-0.5
Lumbar segment 1ipsiL1-1
Lumbar segment 3ipsiL3-0.5
Dorsal root ganglion L3ipsiDRGL3-0.5
Dorsal root ganglion L4ipsiDRGL4-0.5
Area X L4ipsiSCL10L41
Spinal cord layer 8 L4ipsiSCL8L41
Dorsal root ganglion L5ipsiDRGL5-0.5
Interneuron groups of layer 9 L5ipsiiGL9L5-0.5
Motoneuron groups of layer 9 L5ipsiMGL9L5-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL53
Dorsal root ganglion L6ipsiDRGL6-0.5
Interneuron groups of layer 9 L6ipsiiGL9L6-0.5
Motoneuron groups of layer 9 L6ipsiMGL9L6-0.5
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL63
Interneuron groups of layer 9 S1ipsiiGL9S1-0.5
Motoneuron groups of layer 9 S1ipsiMGL9S1-0.5
Interneuron groups of layer 9 S2ipsiiGL9S2-0.5
Motoneuron groups of layer 9 S2ipsiMGL9S2-0.5
Interneuron groups of layer 9 S3ipsiiGL9S3-0.5
Motoneuron groups of layer 9 S3ipsiMGL9S3-0.5
MesencephaloncontraMEC3
Central graycontraCG-0.5
Nucleus of DarkschewitschcontraDk-0.5
Periaqueductal graycontraPAG2
Dorsal periaqueductal graycontraDPAG3
Dorsolateral periaqueductal graycontraDLPAG3
Lateral periaqueductal graycontraLPAG3
Periaqueductal gray dorsal partcontraPAGd1
Periaqueductal gray laterodorsal partcontraPAGLD1
Periaqueductal gray lateroventral partcontraPAGLV1
Periaqueductal gray medial partcontraPAGm1
Ventrolateral periaqueductal graycontraVLPAG0.5
Red nucleuscontraR-0.5
Intercollicular nucleuscontraInCo-0.5
Tegmental areacontraTGA-0.5
Laterodorsal tegmental nucleuscontraLDTg-0.5
Edinger Westphal nucleuscontraEW-0.5
Reticular systemcontraRF3
Deep mesencephalic nucleuscontraDpMe1
Cuneiforme nucleuscontraCnF3
Parabrachial nucleuscontraPB-0.5
Lateral parabrachial nucleuscontraLPB3
Lateral parabrachial nucleus lateral partcontraLPBL0
Parabrachial nucleus central lateral partcontraPBCeL0
Parabrachial nucleus dorsolateral partcontraPBDL0
Parabrachial nucleus superior lateralcontraPBSL0
Gigantocellular reticular nucleuscontraGi-0.5
Gigantocellular reticular nucleus lateral partcontraGirL1
Lateral reticular nucleuscontraLRt3
Subnucleus reticularis dorsaliscontraSRD-0.5
Subnucleus reticularis ventralis medullae oblongataecontraSRV-0.5
Principal sensory trigeminal nucleus dorsolateral partcontraPr5DL-0.5
Nucleus of the solitary tractcontraSol3
Nucleus of the solitary tract lateral partcontraSolL1
Nucleus of the solitary tract medial partcontraSolM1
Raphe pallidus nucleuscontraRPa1
A1 noradrenergic cellscontraA13
Cuneate nucleuscontraCu-0.5
Lateral paragigantocellular nucleuscontraLPGi-0.5
Paragigantocellular reticular nucleus medial partcontraPGiM-0.5
Rostral part of the ventromedial medulla oblongatacontraRMeObvm2
Nucleus of the vertical limb of the diagonal bandcontraVDB-0.5
Medial septal nucleuscontraMS-0.5
HypothalamuscontraHYPO3
Preoptic anterior regioncontraPAreg2
Lateral hypothalamic areacontraLH3
Medial division of the hypothalamuscontraMdH1.5
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Posterior hypothalamic areacontraPHA1
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
ThalamuscontraT3
Central medial thalamic nucleuscontraCM1.5
Centrolateral thalamic nucleuscontraCL3
Paracentral thalamic nucleuscontraPC1.5
Lateral group of the dorsal thalamuscontraLAT0
Ventrobasal complexcontraVB3
Ventral posterolateral thalamic nucleuscontraVPL-0.5
Ventral posteromedial thalamic nucleuscontraVPM-0.5
Intralaminar nucleicontraILN1.5
Lateral posterior thalamic nucleuscontraLP1.5
Laterodorsal thalamic nucleuscontraLD1.5
Medial thalamic zonecontraMTZ0
Posterior groupcontraPTG3
Anterior pretectal nucleuscontraAPT-0.5
Posterior pretectal nucleuscontraPPT-0.5
Dorsolateral funiculuscontradlft-2
Amygdaloid complexcontraAC-0.5
Central amygdaloid nucleuscontraCe0.5
Globus palliduscontraGP-0.5
Ventral pallidumcontraVP-0.5
Accumbens nucleuscontraAc3
Infralimbic cortexcontraIL-0.5
Medial orbital cortexcontraMO-0.5
Septal regioncontraSER2
Lateral septal nucleuscontraLS-0.5
Ventral horn C1contraVHC11
Ventral horn C2contraVHC21
Ventral horn C3contraVHC31
Area X C6contraSCL10C6-0.5
Area X C7contraSCL10C7-0.5
Spinal cord layer 9 C7contraSCL9C7-0.5
Area X T9contraSCL10T9-0.5
Lumbar segment 3contraL3-0.5
Area X L4contraSCL10L41
Spinal cord layer 8 L4contraSCL8L41
CoripsiOrgsCor-0.5
StomachipsiOrgsStomS-1
Bulbocavernosus muscleipsiMuscBCV-10
Bulbospongiosus muscleipsiMuscbsp-0.5
External urethral sphincter muscleipsiMuscEUS-0.5
Ischiocavernosus muscleipsiMuscicav-10
Musculus abductor caudae dorsalisipsiMuscAbdCaDo-10
Femoral bone marrowipsiOrgSkFemM-0.5
ClitorisipsiOrgCLi3
CervixipsiOrgUTC-10
Uterine hornipsiOrgUTh-10
Uterus bodyipsiOrgUTB-10
PenisipsiOrgPenis2
Corpus cavernosumipsiOrgCC3
Corpus spongiosumipsiOrgSPG1
ProstateipsiOrgProst-10
Seminal vesicleipsiOrgRepSV-10
Urinary bladderipsiOrgUrBLa-0.5
Urinary bladder baseipsiOrgUrBLaB-0.5
Musculus abductor caudae dorsaliscontraMuscAbdCaDo-10
Corpus cavernosumcontraOrgCC-0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
A5 noradrenaline cellsipsiA52
Locus coeruleusipsiLC3
Locus coeruleus caudal partipsiLCca-0.5
Locus coeruleus ventral partipsiLCv-0.5
Ventrolateral reticular formationipsiVLRF-0.5
Mesencephalic reticular formationipsiMRF-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi2
Subcoeruleus nucleusipsiSubC3
Lateral paragigantocellular nucleusipsiLPGi-0.5
Paragigantocellular reticular nucleus rostral partipsiPGiR-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm2
Lateral hypothalamic areaipsiLH3
Lateral hypothalamic area posterior partipsiLHAp3
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Paraventricular hypothalamic nucleusipsiPa1
Paraventricular hypothalamic nucleus magnocellular divisionipsiPaMag0
Paraventricular hypothalamic nucleus parvocellular divisionipsiPavPo2
A11 dopamine cellsipsiA11-0.5
Zona incertaipsiZI-0.5
Zona incerta rostromedial partipsiZIrm0
Somatomotoric regionsipsiSMR1.5
Dorsal root ganglion L1ipsiDRGL10
Dorsal root ganglion L2ipsiDRGL20
Dorsal root ganglion L3ipsiDRGL30
Dorsal root ganglion L4ipsiDRGL40
Dorsal root ganglion L5ipsiDRGL50
Dorsal root ganglion L6ipsiDRGL60
Dorsal root ganglion S1ipsiDRGS12
Locus coeruleuscontraLC3
Mesencephalic reticular formationcontraMRF-0.5
Cuneiforme nucleuscontraCnF-2
Gigantocellular reticular nucleuscontraGi0.5
Lateral paragigantocellular nucleuscontraLPGi-0.5
Dorsolateral funiculuscontradlft-2
Dorsal root ganglion S1contraDRGS12
Hamstring nerveipsihamstri1
Sciatic nerveipsisci3
Urinary bladderipsiOrgUrBLa-0.5
Urinary bladdercontraOrgUrBLa-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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