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Rat connectome



Perifornical hypothalamic area [Preoptic anterior region] left


Abbreviation
PFxPAR
Color       
Superior regionsLateral hypothalamic area [Preoptic anterior region]

SynonymsAbbr.Language
Perifornical hypothalamic area [Preoptic anterior region]PFxPAR 
Area perifornicalis  
Perifornical hypothalamic area [Preoptic anterior region]  
Perifornical hypothalamic area Eng
Nucleus perifornicalis Lat
Perifornical area rostral part Eng
Perifornical nucleus  

SubregionsSide
Anterolateral part of the perifornical hypothalamic area [Preoptic anterior region]left

Output to

NameSideAbbr.WeightDetails
Medial longitudinal fasciculusipsimlf1
Nuclei of the lateral lemniscusipsiNLL0
Perilemniscal nucleus ventral partipsiPLZV0
Sagulum nucleusipsiSag0
Medial paralemniscal nucleusipsiMPL0
Interstitial nucleus of medial longitudinal fasciculusipsiIMLF0
Oculomotor nucleusipsi30.5
Dorsolateral periaqueductal grayipsiDLPAG1
Dorsomedial periaqueductal grayipsiDMPAG0.5
Lateral periaqueductal grayipsiLPAG3
Ventrolateral periaqueductal grayipsiVLPAG3
Red nucleusipsiR2
Inferior colliculusipsiICOL2
Tectospinal tractipsits0.5
Midbrain extrapyramidal areaipsiMEA2
Dorsal peduncular pontine nucleusipsiDPPn1
Subpeduncular tegmental nucleusipsiSPTg0.5
Substantia nigra lateral partipsiSNL2
Laterodorsal tegmental nucleusipsiLDTg1
Ventral tegmental nucleusipsiVTg0.5
Dorsal tegmental nucleus central partipsiDTgC0
Dorsal tegmental nucleus pericentral partipsiDTgP0.5
Pedunculopontine tegmental nucleusipsiPPTg1
Edinger Westphal nucleusipsiEW1
PonsipsiP0.5
A5 noradrenaline cellsipsiA51
A7 noradrenaline cellsipsiA70.5
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC2
Parapyramidal nucleusipsiPPy0.5
Dorsomedial tegmental areaipsiDMTg0.5
Reticulotegmental nucleus of the ponsipsiRtTg0.5
Prepositus nucleusipsiPr0.5
Intermediate reticular nucleusipsiIRt2
Isthmic reticular formationipsiisRT2
Paramedian reticular nucleusipsiPMn0
Deep mesencephalic nucleusipsiDpMe0
Precuneiform areaipsiPCnFa1
Pontine reticular nucleus oral partipsiPnO1
Pontine reticular nucleus paramedian partipsiPRNpm0
Pontine reticular nucleus ventral partipsiPnV1
Pontine reticular nucleus caudal partipsiPNC1
Koelliker Fuse nucleusipsiKF0.5
Lateral parabrachial nucleusipsiLPB2
Parabrachial nucleus medialipsiPBnMe2
Gigantocellular reticular nucleusipsiGi1
Gigantocellular reticular nucleus alpha partipsiGiA1
Gigantocellular reticular nucleus ventral partipsiGiV2
Lateral reticular nucleusipsiLRt0.5
Medial subnucleus reticularis ventralisipsiMSRV1
Medullary reticular nucleus dorsal partipsiMdDd1
Parvicellular reticular nucleusipsiPCRt2
Parvicellular reticular nucleus alpha partipsiPCRtA1
Rhabdoid nucleusipsiRbd0
Sphenoid nucleusipsiSph0
Nucleus of the trapezoid bodyipsiTz0
Subcoeruleus nucleus alpha partipsiSubCA1
Subcoeruleus nucleus dorsal partipsiSubCD2
Subcoeruleus nucleus ventral partipsiSubCV1
Supragenual nucleusipsiSGe0.5
C1 adrenaline cellsipsiC12
C2 adrenaline cellsipsiC20.5
C3 adrenaline cellsipsiC31
Ambiguus nucleusipsiAmb0.5
Boetzinger complexipsiBo0.5
Abducens nucleusipsi60
Facial nucleusipsi70
Perifacial zoneipsiP70.5
Hypoglossal nucleusipsi12S0.5
Mesencephalic trigeminal tractipsime50.5
Supratrigeminal nucleusipsiSu51
Motor trigeminal nucleusipsiMo50.5
Spinal trigeminal nucleusipsiSp5nc0
Peritrigeminal zoneipsiP50.5
Trigeminal solitary transition zoneipsi5Sol1
Trigeminothalamic tractipsitth1
Paratrochlear nucleusipsiPa40.5
Trochlear nucleusipsi40.5
Medial vestibular nucleus magnocellular partipsiMVeMC1
Vestibulomesencephalic tractipsi8tv1
Vestibulospinal tractipsivesp0.5
Nucleus of the solitary tractipsiSol1
Nucleus of the solitary tract commissural partipsiSolC-0.5
Parasolitary nucleusipsiPSol0
Solitary tractipsisol0.5
Dorsal motor nucleus of vagusipsi101
Dorsal raphe nucleusipsiDR2
Median raphe nucleusipsiMnR3
Pontine raphe nucleusipsiPnR0
Raphe magnus nucleusipsiRMg2
Raphe obscurus nucleusipsiROb1
Raphe pallidus nucleusipsiRPa1
Paramedial raphe nucleusipsiRApam0.5
A1 noradrenergic cells rostral partipsiA1R1
A2 noradrenergic cellsipsiA21
Epifascicular nucleusipsiEF1
Linear nucleus of the medullaipsiLi0.5
Nucleus of RolleripsiRo0.5
Inferior oliveipsiIO0.5
Juxtaolivary nucleusipsiJxO0
Caudal periolivary nucleusipsiCPO0
Lateral superior oliveipsiLSO1
Dorsal paragigantocellular nucleusipsiDPGi0.5
Lateral paragigantocellular nucleusipsiLPGi0.5
Lateral paragigantocellular nucleus alpha partipsiLPBGiA0.5
Lateral paragigantocellular nucleus external partipsiLPBGiE0.5
Pre Boetzinger complexipsiPrBo0.5
Retroambiguus nucleusipsiRAmb0
Rostral ventral respiratory groupipsiRVRG0.5
Inferior salivatory nucleusipsiIS1
Superior salivatory nucleusipsiSuS1
Ventromedial hypothalamic nucleusipsiVMH-0.5
Paraventricular hypothalamic nucleusipsiPa-0.5
Nucleus X [Special group]ipsiNcX0
Superior cerebral peduncleipsisucp2
Medial lemniscusipsiml0.5
Ventral spinocerebellar tractipsivsc0.5
Accessory basal nucleusipsiAB-1
Lateral amygdaloid nucleusipsiLA-1
Field CA1 of hippocampus caudal partipsiCA1ca1
Lateral septal nucleusipsiLS-0.5
Central cervical nucleusipsiMESccn0.5
Pyramidal tractipsipy0.5
Rubrospinal tractipsirs1
Thoracal segment 1ipsiT1-0.5
Thoracal segment 2ipsiT2-0.5
Thoracal segment 3ipsiT3-0.5
Thoracal segment 4ipsiT4-0.5
Thoracal segment 5ipsiT5-0.5
Thoracal segment 6ipsiT6-0.5
Thoracal segment 7ipsiT7-0.5
Thoracal segment 8ipsiT8-0.5
Thoracal segment 9ipsiT9-0.5
Thoracal segment 10ipsiT10-0.5
Thoracal segment 11ipsiT11-0.5
Thoracal segment 12ipsiT12-0.5
Thoracal segment 13ipsiT13-0.5
Medial longitudinal fasciculuscontramlf-0.5
Nuclei of the lateral lemniscuscontraNLL0
Perilemniscal nucleus ventral partcontraPLZV0
Sagulum nucleuscontraSag0
Medial paralemniscal nucleuscontraMPL0
Interstitial nucleus of medial longitudinal fasciculuscontraIMLF0
Oculomotor nucleuscontra3-0.5
Dorsolateral periaqueductal graycontraDLPAG-0.5
Dorsomedial periaqueductal graycontraDMPAG-0.5
Lateral periaqueductal graycontraLPAG-0.5
Ventrolateral periaqueductal graycontraVLPAG-0.5
Red nucleuscontraR0
Inferior colliculuscontraICOL1
Tectospinal tractcontrats-0.5
Dorsal peduncular pontine nucleuscontraDPPn-0.5
Subpeduncular tegmental nucleuscontraSPTg-0.5
Substantia nigra lateral partcontraSNL0.5
Laterodorsal tegmental nucleuscontraLDTg-0.5
Ventral tegmental nucleuscontraVTg-0.5
Dorsal tegmental nucleus central partcontraDTgC0
Dorsal tegmental nucleus pericentral partcontraDTgP-0.5
Pedunculopontine tegmental nucleuscontraPPTg-0.5
Edinger Westphal nucleuscontraEW-0.5
PonscontraP-0.5
A5 noradrenaline cellscontraA5-0.5
A7 noradrenaline cellscontraA7-0.5
Barringtons nucleuscontraBar-0.5
Locus coeruleuscontraLC-0.5
Parapyramidal nucleuscontraPPy-0.5
Dorsomedial tegmental areacontraDMTg-0.5
Reticulotegmental nucleus of the ponscontraRtTg-0.5
Prepositus nucleuscontraPr-0.5
Intermediate reticular nucleuscontraIRt-0.5
Isthmic reticular formationcontraisRT-0.5
Paramedian reticular nucleuscontraPMn0
Deep mesencephalic nucleuscontraDpMe0
Precuneiform areacontraPCnFa-0.5
Pontine reticular nucleus oral partcontraPnO-0.5
Pontine reticular nucleus paramedian partcontraPRNpm0
Pontine reticular nucleus ventral partcontraPnV-0.5
Pontine reticular nucleus caudal partcontraPNC-0.5
Koelliker Fuse nucleuscontraKF-0.5
Lateral parabrachial nucleuscontraLPB-0.5
Parabrachial nucleus medialcontraPBnMe-0.5
Gigantocellular reticular nucleuscontraGi-0.5
Gigantocellular reticular nucleus alpha partcontraGiA-0.5
Gigantocellular reticular nucleus ventral partcontraGiV-0.5
Lateral reticular nucleuscontraLRt-0.5
Medial subnucleus reticularis ventraliscontraMSRV-0.5
Medullary reticular nucleus dorsal partcontraMdDd-0.5
Parvicellular reticular nucleuscontraPCRt-0.5
Parvicellular reticular nucleus alpha partcontraPCRtA-0.5
Rhabdoid nucleuscontraRbd0
Sphenoid nucleuscontraSph0
Nucleus of the trapezoid bodycontraTz0
Subcoeruleus nucleus alpha partcontraSubCA-0.5
Subcoeruleus nucleus dorsal partcontraSubCD-0.5
Subcoeruleus nucleus ventral partcontraSubCV-0.5
Supragenual nucleuscontraSGe-0.5
C1 adrenaline cellscontraC1-0.5
C2 adrenaline cellscontraC2-0.5
C3 adrenaline cellscontraC3-0.5
Ambiguus nucleuscontraAmb-0.5
Boetzinger complexcontraBo-0.5
Abducens nucleuscontra60
Facial nucleuscontra70
Perifacial zonecontraP7-0.5
Hypoglossal nucleuscontra12S-0.5
Mesencephalic trigeminal tractcontrame5-0.5
Supratrigeminal nucleuscontraSu5-0.5
Motor trigeminal nucleuscontraMo5-0.5
Spinal trigeminal nucleuscontraSp5nc0
Peritrigeminal zonecontraP5-0.5
Trigeminal solitary transition zonecontra5Sol-0.5
Trigeminothalamic tractcontratth-0.5
Paratrochlear nucleuscontraPa4-0.5
Trochlear nucleuscontra4-0.5
Medial vestibular nucleus magnocellular partcontraMVeMC-0.5
Vestibulomesencephalic tractcontra8tv-0.5
Vestibulospinal tractcontravesp-0.5
Nucleus of the solitary tractcontraSol-0.5
Parasolitary nucleuscontraPSol0
Solitary tractcontrasol-0.5
Dorsal motor nucleus of vaguscontra10-0.5
Dorsal raphe nucleuscontraDR-0.5
Median raphe nucleuscontraMnR-0.5
Pontine raphe nucleuscontraPnR0
Raphe magnus nucleuscontraRMg-0.5
Raphe obscurus nucleuscontraROb-0.5
Raphe pallidus nucleuscontraRPa-0.5
Paramedial raphe nucleuscontraRApam-0.5
A1 noradrenergic cells rostral partcontraA1R-0.5
A2 noradrenergic cellscontraA2-0.5
Epifascicular nucleuscontraEF-0.5
Linear nucleus of the medullacontraLi-0.5
Nucleus of RollercontraRo-0.5
Inferior olivecontraIO-0.5
Juxtaolivary nucleuscontraJxO0
Caudal periolivary nucleuscontraCPO0
Lateral superior olivecontraLSO-0.5
Dorsal paragigantocellular nucleuscontraDPGi-0.5
Lateral paragigantocellular nucleuscontraLPGi-0.5
Lateral paragigantocellular nucleus alpha partcontraLPBGiA-0.5
Lateral paragigantocellular nucleus external partcontraLPBGiE-0.5
Pre Boetzinger complexcontraPrBo-0.5
Retroambiguus nucleuscontraRAmb0
Rostral ventral respiratory groupcontraRVRG-0.5
Inferior salivatory nucleuscontraIS-0.5
Superior salivatory nucleuscontraSuS-0.5
Nucleus X [Special group]contraNcX0
Superior cerebral pedunclecontrasucp-0.5
Medial lemniscuscontraml-0.5
Ventral spinocerebellar tractcontravsc-0.5
Field CA1 of hippocampus caudal partcontraCA1ca-0.5
Central cervical nucleuscontraMESccn-0.5
Pyramidal tractcontrapy-0.5
Rubrospinal tractcontrars-0.5
Thoracal segment 1contraT1-0.5
Thoracal segment 2contraT2-0.5
Thoracal segment 3contraT3-0.5
Thoracal segment 4contraT4-0.5
Thoracal segment 5contraT5-0.5
Thoracal segment 6contraT6-0.5
Thoracal segment 7contraT7-0.5
Thoracal segment 8contraT8-0.5
Thoracal segment 9contraT9-0.5
Thoracal segment 10contraT10-0.5
Thoracal segment 11contraT11-0.5
Thoracal segment 12contraT12-0.5
Thoracal segment 13contraT13-0.5
Facial nerveipsi7fn0.5
Facial nervecontra7fn-0.5
Lower gingivaipsiOrgOCLg-10
Lower gingivacontraOrgOCLg-10
Ventral stomach wallipsiOrgsStomVWS-0.5
Lower lipipsiOrgLoLi-10

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG3
Ventral tegmental area A10ipsiVTA4
Laterodorsal tegmental nucleusipsiLDTg3
Prelocus coeruleus nucleusipsiPLC3
Nucleus incertus pars compactaipsiNIc1
Parabrachial nucleus medialipsiPBnMe3
Parabrachial nucleus waist partipsiPBW3
Mesencephalic trigeminal nucleusipsiMe53
A1 noradrenergic cellsipsiA12
Magnocellular preoptic nucleusipsiMCPO1
Anterior hypothalamic nucleusipsiAHn-0.5
Posterior hypothalamic nucleus caudal partipsiPHCa3
Posterior hypothalamic nucleus rostral partipsiPHRo3
Paraventricular thalamic nucleusipsiPV1.5
Central amygdaloid nucleusipsiCe-1
Central amygdaloid nucleus lateral division medial partipsiCeLm1
Central amygdaloid nucleus medial divisionipsiCeM1
Dorsal hippocampusipsiHIPPd2
Dentate gyrusipsiDG1.5
Entorhinal cortexipsiEnt2
Prelimbic cortexipsiPrL2
Infralimbic cortexipsiIL2
Parietal association cortexipsiPtA1.5
Interpeduncular nucleusipsiIP1.5
Central graycontraCG1
Ventral tegmental area A10contraVTA1
A1 noradrenergic cellscontraA12
Paraventricular thalamic nucleuscontraPV0
Dentate gyruscontraDG0
Infralimbic cortexcontraIL0
Parietal association cortexcontraPtA0
Interpeduncular nucleuscontraIP0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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