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Rat connectome



Medial part of the caudal perifornical area left


Abbreviation
PeFCM
Color       
Superior regionsPerifornical nucleus caudal part

SynonymsAbbr.Language
Medial part of the caudal perifornical areaPeFCMEng

Output to

NameSideAbbr.WeightDetails
Medial longitudinal fasciculusipsimlf2
Nuclei of the lateral lemniscusipsiNLL0
Perilemniscal nucleus ventral partipsiPLZV0.5
Sagulum nucleusipsiSag0
Medial paralemniscal nucleusipsiMPL0.5
Interstitial nucleus of medial longitudinal fasciculusipsiIMLF0
Oculomotor nucleusipsi30.5
Dorsolateral periaqueductal grayipsiDLPAG2
Dorsomedial periaqueductal grayipsiDMPAG1
Lateral periaqueductal grayipsiLPAG3
Ventrolateral periaqueductal grayipsiVLPAG3
Tectospinal tractipsits0.5
Dorsal peduncular pontine nucleusipsiDPPn1
Subpeduncular tegmental nucleusipsiSPTg1
Laterodorsal tegmental nucleusipsiLDTg2
Ventral tegmental nucleusipsiVTg1
Dorsal tegmental nucleus central partipsiDTgC0.5
Dorsal tegmental nucleus pericentral partipsiDTgP1
Pedunculopontine tegmental nucleusipsiPPTg1
Edinger Westphal nucleusipsiEW1
PonsipsiP0.5
A5 noradrenaline cellsipsiA51
A7 noradrenaline cellsipsiA70.5
Barringtons nucleusipsiBar1
Locus coeruleusipsiLC2
Parapyramidal nucleusipsiPPy0.5
Dorsomedial tegmental areaipsiDMTg1
Reticulotegmental nucleus of the ponsipsiRtTg1
Prepositus nucleusipsiPr0.5
Intermediate reticular nucleusipsiIRt1
Isthmic reticular formationipsiisRT2
Paramedian reticular nucleusipsiPMn0.5
Deep mesencephalic nucleusipsiDpMe0
Precuneiform areaipsiPCnFa2
Pontine reticular nucleus oral partipsiPnO2
Pontine reticular nucleus paramedian partipsiPRNpm0
Pontine reticular nucleus ventral partipsiPnV1
Pontine reticular nucleus caudal partipsiPNC1
Koelliker Fuse nucleusipsiKF0.5
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi1
Gigantocellular reticular nucleus alpha partipsiGiA1
Gigantocellular reticular nucleus ventral partipsiGiV1
Lateral reticular nucleusipsiLRt0.5
Medial subnucleus reticularis ventralisipsiMSRV0.5
Medullary reticular nucleus dorsal partipsiMdDd1
Parvicellular reticular nucleusipsiPCRt0
Parvicellular reticular nucleus alpha partipsiPCRtA1
Rhabdoid nucleusipsiRbd0.5
Sphenoid nucleusipsiSph0.5
Nucleus of the trapezoid bodyipsiTz0.5
Subcoeruleus nucleus alpha partipsiSubCA1
Subcoeruleus nucleus dorsal partipsiSubCD2
Subcoeruleus nucleus ventral partipsiSubCV1
Supragenual nucleusipsiSGe0
C1 adrenaline cellsipsiC10.5
C2 adrenaline cellsipsiC21
C3 adrenaline cellsipsiC30.5
Ambiguus nucleusipsiAmb0
Boetzinger complexipsiBo0
Abducens nucleusipsi60.5
Facial nucleusipsi70
Perifacial zoneipsiP71
Hypoglossal nucleusipsi12S0.5
Mesencephalic trigeminal tractipsime50
Supratrigeminal nucleusipsiSu51
Motor trigeminal nucleusipsiMo50.5
Spinal trigeminal nucleusipsiSp5nc0
Peritrigeminal zoneipsiP50.5
Trigeminal solitary transition zoneipsi5Sol0.5
Trigeminothalamic tractipsitth1
Paratrochlear nucleusipsiPa41
Trochlear nucleusipsi41
Medial vestibular nucleus magnocellular partipsiMVeMC0.5
Vestibulomesencephalic tractipsi8tv0.5
Vestibulospinal tractipsivesp0.5
Nucleus of the solitary tractipsiSol0.5
Parasolitary nucleusipsiPSol0
Solitary tractipsisol0
Dorsal motor nucleus of vagusipsi101
Dorsal raphe nucleusipsiDR2
Median raphe nucleusipsiMnR1
Pontine raphe nucleusipsiPnR1
Raphe magnus nucleusipsiRMg2
Raphe obscurus nucleusipsiROb1
Raphe pallidus nucleusipsiRPa2
Paramedial raphe nucleusipsiRApam1
A1 noradrenergic cells rostral partipsiA1R0.5
A2 noradrenergic cellsipsiA21
Epifascicular nucleusipsiEF0.5
Linear nucleus of the medullaipsiLi0
Nucleus of RolleripsiRo0.5
Inferior oliveipsiIO0
Juxtaolivary nucleusipsiJxO1
Caudal periolivary nucleusipsiCPO0.5
Lateral superior oliveipsiLSO0
Dorsal paragigantocellular nucleusipsiDPGi0.5
Lateral paragigantocellular nucleusipsiLPGi1
Lateral paragigantocellular nucleus alpha partipsiLPBGiA1
Lateral paragigantocellular nucleus external partipsiLPBGiE1
Pre Boetzinger complexipsiPrBo0.5
Retroambiguus nucleusipsiRAmb0.5
Rostral ventral respiratory groupipsiRVRG0
Inferior salivatory nucleusipsiIS0
Superior salivatory nucleusipsiSuS1
Nucleus X [Special group]ipsiNcX0
Superior cerebral peduncleipsisucp2
Medial lemniscusipsiml1
Ventral spinocerebellar tractipsivsc0
Field CA1 of hippocampus caudal partipsiCA1ca1
Central cervical nucleusipsiMESccn0.5
Pyramidal tractipsipy0
Rubrospinal tractipsirs1
Medial longitudinal fasciculuscontramlf-0.5
Nuclei of the lateral lemniscuscontraNLL0
Perilemniscal nucleus ventral partcontraPLZV-0.5
Sagulum nucleuscontraSag0
Medial paralemniscal nucleuscontraMPL-0.5
Interstitial nucleus of medial longitudinal fasciculuscontraIMLF0
Oculomotor nucleuscontra3-0.5
Dorsolateral periaqueductal graycontraDLPAG-0.5
Dorsomedial periaqueductal graycontraDMPAG-0.5
Lateral periaqueductal graycontraLPAG-0.5
Ventrolateral periaqueductal graycontraVLPAG-0.5
Tectospinal tractcontrats-0.5
Dorsal peduncular pontine nucleuscontraDPPn-0.5
Subpeduncular tegmental nucleuscontraSPTg-0.5
Laterodorsal tegmental nucleuscontraLDTg-0.5
Ventral tegmental nucleuscontraVTg-0.5
Dorsal tegmental nucleus central partcontraDTgC-0.5
Dorsal tegmental nucleus pericentral partcontraDTgP-0.5
Pedunculopontine tegmental nucleuscontraPPTg-0.5
Edinger Westphal nucleuscontraEW-0.5
PonscontraP-0.5
A5 noradrenaline cellscontraA5-0.5
A7 noradrenaline cellscontraA7-0.5
Barringtons nucleuscontraBar-0.5
Locus coeruleuscontraLC-0.5
Parapyramidal nucleuscontraPPy-0.5
Dorsomedial tegmental areacontraDMTg-0.5
Reticulotegmental nucleus of the ponscontraRtTg-0.5
Prepositus nucleuscontraPr-0.5
Intermediate reticular nucleuscontraIRt-0.5
Isthmic reticular formationcontraisRT-0.5
Paramedian reticular nucleuscontraPMn-0.5
Deep mesencephalic nucleuscontraDpMe0
Precuneiform areacontraPCnFa-0.5
Pontine reticular nucleus oral partcontraPnO-0.5
Pontine reticular nucleus paramedian partcontraPRNpm0
Pontine reticular nucleus ventral partcontraPnV-0.5
Pontine reticular nucleus caudal partcontraPNC-0.5
Koelliker Fuse nucleuscontraKF-0.5
Lateral parabrachial nucleuscontraLPB-0.5
Parabrachial nucleus medialcontraPBnMe-0.5
Gigantocellular reticular nucleuscontraGi-0.5
Gigantocellular reticular nucleus alpha partcontraGiA-0.5
Gigantocellular reticular nucleus ventral partcontraGiV-0.5
Lateral reticular nucleuscontraLRt-0.5
Medial subnucleus reticularis ventraliscontraMSRV-0.5
Medullary reticular nucleus dorsal partcontraMdDd-0.5
Parvicellular reticular nucleuscontraPCRt0
Parvicellular reticular nucleus alpha partcontraPCRtA-0.5
Rhabdoid nucleuscontraRbd-0.5
Sphenoid nucleuscontraSph-0.5
Nucleus of the trapezoid bodycontraTz-0.5
Subcoeruleus nucleus alpha partcontraSubCA-0.5
Subcoeruleus nucleus dorsal partcontraSubCD-0.5
Subcoeruleus nucleus ventral partcontraSubCV-0.5
Supragenual nucleuscontraSGe0
C1 adrenaline cellscontraC1-0.5
C2 adrenaline cellscontraC2-0.5
C3 adrenaline cellscontraC3-0.5
Ambiguus nucleuscontraAmb0
Boetzinger complexcontraBo0
Abducens nucleuscontra6-0.5
Facial nucleuscontra70
Perifacial zonecontraP7-0.5
Hypoglossal nucleuscontra12S-0.5
Mesencephalic trigeminal tractcontrame50
Supratrigeminal nucleuscontraSu5-0.5
Motor trigeminal nucleuscontraMo5-0.5
Spinal trigeminal nucleuscontraSp5nc0
Peritrigeminal zonecontraP5-0.5
Trigeminal solitary transition zonecontra5Sol-0.5
Trigeminothalamic tractcontratth-0.5
Paratrochlear nucleuscontraPa4-0.5
Trochlear nucleuscontra4-0.5
Medial vestibular nucleus magnocellular partcontraMVeMC-0.5
Vestibulomesencephalic tractcontra8tv-0.5
Vestibulospinal tractcontravesp-0.5
Nucleus of the solitary tractcontraSol-0.5
Parasolitary nucleuscontraPSol0
Solitary tractcontrasol0
Dorsal motor nucleus of vaguscontra10-0.5
Dorsal raphe nucleuscontraDR-0.5
Median raphe nucleuscontraMnR-0.5
Pontine raphe nucleuscontraPnR-0.5
Raphe magnus nucleuscontraRMg-0.5
Raphe obscurus nucleuscontraROb-0.5
Raphe pallidus nucleuscontraRPa-0.5
Paramedial raphe nucleuscontraRApam-0.5
A1 noradrenergic cells rostral partcontraA1R-0.5
A2 noradrenergic cellscontraA2-0.5
Epifascicular nucleuscontraEF-0.5
Linear nucleus of the medullacontraLi0
Nucleus of RollercontraRo-0.5
Inferior olivecontraIO0
Juxtaolivary nucleuscontraJxO-0.5
Caudal periolivary nucleuscontraCPO-0.5
Lateral superior olivecontraLSO0
Dorsal paragigantocellular nucleuscontraDPGi-0.5
Lateral paragigantocellular nucleuscontraLPGi-0.5
Lateral paragigantocellular nucleus alpha partcontraLPBGiA-0.5
Lateral paragigantocellular nucleus external partcontraLPBGiE-0.5
Pre Boetzinger complexcontraPrBo-0.5
Retroambiguus nucleuscontraRAmb-0.5
Rostral ventral respiratory groupcontraRVRG0
Inferior salivatory nucleuscontraIS0
Superior salivatory nucleuscontraSuS-0.5
Nucleus X [Special group]contraNcX0
Superior cerebral pedunclecontrasucp-0.5
Medial lemniscuscontraml-0.5
Ventral spinocerebellar tractcontravsc0
Field CA1 of hippocampus caudal partcontraCA1ca-0.5
Central cervical nucleuscontraMESccn-0.5
Pyramidal tractcontrapy0
Rubrospinal tractcontrars-0.5
Facial nerveipsi7fn0
Facial nervecontra7fn0

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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