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Rat connectome



Lateral hypothalamic area dorsal part left


Abbreviation
LHd
Color       
Superior regionsLateral hypothalamic area

SynonymsAbbr.Language
Lateral hypothalamic area dorsal partLHdEng
Hypothalamic lateral zone dorsal partLHAdEng
Dorsal part of lateral hypothalamic area Eng

SubregionsSide
Lateral hypothalamic area dorsal part caudal levelleft

Output to

NameSideAbbr.WeightDetails
Central gray dorsal partipsiCGD-0.5
Medial longitudinal fasciculusipsimlf0.5
Nuclei of the lateral lemniscusipsiNLL0
Perilemniscal nucleus ventral partipsiPLZV0.5
Sagulum nucleusipsiSag0
Medial paralemniscal nucleusipsiMPL0
Interstitial nucleus of medial longitudinal fasciculusipsiIMLF0
Oculomotor nucleusipsi30
Dorsolateral periaqueductal grayipsiDLPAG1
Dorsomedial periaqueductal grayipsiDMPAG0.5
Lateral periaqueductal grayipsiLPAG1
Ventrolateral periaqueductal grayipsiVLPAG1
Tectospinal tractipsits1
Dorsal peduncular pontine nucleusipsiDPPn0
Subpeduncular tegmental nucleusipsiSPTg0
Laterodorsal tegmental nucleusipsiLDTg0.5
Ventral tegmental nucleusipsiVTg1
Dorsal tegmental nucleus central partipsiDTgC0
Dorsal tegmental nucleus pericentral partipsiDTgP0.5
Pedunculopontine tegmental nucleusipsiPPTg0
Edinger Westphal nucleusipsiEW1
PonsipsiP0
A5 noradrenaline cellsipsiA50.5
A7 noradrenaline cellsipsiA70
Barringtons nucleusipsiBar0
Locus coeruleusipsiLC1
Parapyramidal nucleusipsiPPy0.5
Dorsomedial tegmental areaipsiDMTg1
Reticulotegmental nucleus of the ponsipsiRtTg0.5
Prepositus nucleusipsiPr0.5
Intermediate reticular nucleusipsiIRt1
Intermediate reticular nucleus alpha partipsiIRtA3
Isthmic reticular formationipsiisRT1
Paramedian reticular nucleusipsiPMn0
Preparasubthalamic nucleusipsiPST-0.5
Deep mesencephalic nucleusipsiDpMe0
Precuneiform areaipsiPCnFa0
Pontine reticular nucleus oral partipsiPnO1
Pontine reticular nucleus paramedian partipsiPRNpm0.5
Pontine reticular nucleus ventral partipsiPnV0.5
Pontine reticular nucleus caudal partipsiPNC0
Koelliker Fuse nucleusipsiKF0
Lateral parabrachial nucleusipsiLPB2.5
Parabrachial nucleus medialipsiPBnMe2.5
Gigantocellular reticular nucleusipsiGi1
Gigantocellular reticular nucleus alpha partipsiGiA0.5
Gigantocellular reticular nucleus ventral partipsiGiV1
Lateral reticular nucleusipsiLRt0.5
Medial subnucleus reticularis ventralisipsiMSRV0.5
Medullary reticular nucleus dorsal partipsiMdDd0.5
Parvicellular reticular nucleusipsiPCRt1
Parvicellular reticular nucleus alpha partipsiPCRtA0
Rhabdoid nucleusipsiRbd1
Sphenoid nucleusipsiSph1
Nucleus of the trapezoid bodyipsiTz0
Subcoeruleus nucleus alpha partipsiSubCA1
Subcoeruleus nucleus dorsal partipsiSubCD0.5
Subcoeruleus nucleus ventral partipsiSubCV0.5
Supragenual nucleusipsiSGe0
C1 adrenaline cellsipsiC11
C2 adrenaline cellsipsiC20.5
C3 adrenaline cellsipsiC30
Ambiguus nucleusipsiAmb0.5
Boetzinger complexipsiBo0
Abducens nucleusipsi60.5
Facial nucleusipsi70
Perifacial zoneipsiP71
Hypoglossal nucleusipsi12S0.5
Mesencephalic trigeminal tractipsime50.5
Supratrigeminal nucleusipsiSu50.5
Motor trigeminal nucleusipsiMo50.5
Spinal trigeminal nucleusipsiSp5nc0
Peritrigeminal zoneipsiP50
Trigeminal solitary transition zoneipsi5Sol1
Trigeminothalamic tractipsitth0
Paratrochlear nucleusipsiPa40
Trochlear nucleusipsi40.5
Medial vestibular nucleus magnocellular partipsiMVeMC0
Vestibulomesencephalic tractipsi8tv0.5
Vestibulospinal tractipsivesp0
Nucleus of the solitary tractipsiSol0.5
Nucleus of the solitary tract caudal partipsiSolca1.5
Parasolitary nucleusipsiPSol0
Solitary tractipsisol0.5
Dorsal motor nucleus of vagusipsi101.5
Dorsal raphe nucleusipsiDR1
Median raphe nucleusipsiMnR0
Pontine raphe nucleusipsiPnR0.5
Raphe magnus nucleusipsiRMg0.5
Raphe obscurus nucleusipsiROb0.5
Raphe pallidus nucleusipsiRPa1
Paramedial raphe nucleusipsiRApam0.5
A1 noradrenergic cells rostral partipsiA1R0
A2 noradrenergic cellsipsiA20.5
Epifascicular nucleusipsiEF0
Linear nucleus of the medullaipsiLi0
Nucleus of RolleripsiRo0
Inferior oliveipsiIO0
Juxtaolivary nucleusipsiJxO0
Caudal periolivary nucleusipsiCPO0
Lateral superior oliveipsiLSO0
Dorsal paragigantocellular nucleusipsiDPGi0.5
Lateral paragigantocellular nucleusipsiLPGi2
Lateral paragigantocellular nucleus alpha partipsiLPBGiA0
Lateral paragigantocellular nucleus external partipsiLPBGiE1
Pre Boetzinger complexipsiPrBo0.5
Retroambiguus nucleusipsiRAmb0
Rostral ventral respiratory groupipsiRVRG1
Inferior salivatory nucleusipsiIS0
Superior salivatory nucleusipsiSuS1
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC1
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0.5
Lateral hypothalamic area dorsal partipsiLHd-0.5
Lateral hypothalamic area juxtadorsomedial regionipsiJDM2
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd1
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv1
Paraventricular hypothalamic nucleusipsiPa2
Nucleus X [Special group]ipsiNcX0.5
Central medial thalamic nucleusipsiCM-0.5
Paraventricular thalamic nucleus anterior partipsiPVA-0.5
Superior cerebral peduncleipsisucp0.5
Medial lemniscusipsiml0.5
Ventral spinocerebellar tractipsivsc0
Field CA1 of hippocampus caudal partipsiCA1ca0
Central cervical nucleusipsiMESccn0.5
Pyramidal tractipsipy1
Rubrospinal tractipsirs0
Cervical segment 2ipsiCS23
Thoracal segment 8ipsiT83
Lumbar segment 1ipsiL13
Lumbar segment 6ipsiL63
Sacral segment 1ipsiSa11
Sacral segment 4ipsiSa43
Medial longitudinal fasciculuscontramlf-0.5
Nuclei of the lateral lemniscuscontraNLL0
Perilemniscal nucleus ventral partcontraPLZV-0.5
Sagulum nucleuscontraSag0
Medial paralemniscal nucleuscontraMPL0
Interstitial nucleus of medial longitudinal fasciculuscontraIMLF0
Oculomotor nucleuscontra30
Dorsolateral periaqueductal graycontraDLPAG-0.5
Dorsomedial periaqueductal graycontraDMPAG-0.5
Lateral periaqueductal graycontraLPAG-0.5
Ventrolateral periaqueductal graycontraVLPAG-0.5
Tectospinal tractcontrats-0.5
Dorsal peduncular pontine nucleuscontraDPPn0
Subpeduncular tegmental nucleuscontraSPTg0
Laterodorsal tegmental nucleuscontraLDTg-0.5
Ventral tegmental nucleuscontraVTg-0.5
Dorsal tegmental nucleus central partcontraDTgC0
Dorsal tegmental nucleus pericentral partcontraDTgP-0.5
Pedunculopontine tegmental nucleuscontraPPTg0
Edinger Westphal nucleuscontraEW-0.5
PonscontraP0
A5 noradrenaline cellscontraA5-0.5
A7 noradrenaline cellscontraA70
Barringtons nucleuscontraBar0
Locus coeruleuscontraLC-0.5
Parapyramidal nucleuscontraPPy-0.5
Dorsomedial tegmental areacontraDMTg-0.5
Reticulotegmental nucleus of the ponscontraRtTg-0.5
Prepositus nucleuscontraPr-0.5
Intermediate reticular nucleuscontraIRt-0.5
Isthmic reticular formationcontraisRT-0.5
Paramedian reticular nucleuscontraPMn0
Deep mesencephalic nucleuscontraDpMe0
Precuneiform areacontraPCnFa0
Pontine reticular nucleus oral partcontraPnO-0.5
Pontine reticular nucleus paramedian partcontraPRNpm-0.5
Pontine reticular nucleus ventral partcontraPnV-0.5
Pontine reticular nucleus caudal partcontraPNC0
Koelliker Fuse nucleuscontraKF0
Lateral parabrachial nucleuscontraLPB-0.5
Parabrachial nucleus medialcontraPBnMe-0.5
Gigantocellular reticular nucleuscontraGi-0.5
Gigantocellular reticular nucleus alpha partcontraGiA-0.5
Gigantocellular reticular nucleus ventral partcontraGiV-0.5
Lateral reticular nucleuscontraLRt-0.5
Medial subnucleus reticularis ventraliscontraMSRV-0.5
Medullary reticular nucleus dorsal partcontraMdDd-0.5
Parvicellular reticular nucleuscontraPCRt-0.5
Parvicellular reticular nucleus alpha partcontraPCRtA0
Rhabdoid nucleuscontraRbd-0.5
Sphenoid nucleuscontraSph-0.5
Nucleus of the trapezoid bodycontraTz0
Subcoeruleus nucleus alpha partcontraSubCA-0.5
Subcoeruleus nucleus dorsal partcontraSubCD-0.5
Subcoeruleus nucleus ventral partcontraSubCV-0.5
Supragenual nucleuscontraSGe0
C1 adrenaline cellscontraC1-0.5
C2 adrenaline cellscontraC2-0.5
C3 adrenaline cellscontraC30
Ambiguus nucleuscontraAmb-0.5
Boetzinger complexcontraBo0
Abducens nucleuscontra6-0.5
Facial nucleuscontra70
Perifacial zonecontraP7-0.5
Hypoglossal nucleuscontra12S-0.5
Mesencephalic trigeminal tractcontrame5-0.5
Supratrigeminal nucleuscontraSu5-0.5
Motor trigeminal nucleuscontraMo5-0.5
Spinal trigeminal nucleuscontraSp5nc0
Peritrigeminal zonecontraP50
Trigeminal solitary transition zonecontra5Sol-0.5
Trigeminothalamic tractcontratth0
Paratrochlear nucleuscontraPa40
Trochlear nucleuscontra4-0.5
Medial vestibular nucleus magnocellular partcontraMVeMC0
Vestibulomesencephalic tractcontra8tv-0.5
Vestibulospinal tractcontravesp0
Nucleus of the solitary tractcontraSol-0.5
Parasolitary nucleuscontraPSol0
Solitary tractcontrasol-0.5
Dorsal motor nucleus of vaguscontra10-0.5
Dorsal raphe nucleuscontraDR-0.5
Median raphe nucleuscontraMnR0
Pontine raphe nucleuscontraPnR-0.5
Raphe magnus nucleuscontraRMg-0.5
Raphe obscurus nucleuscontraROb-0.5
Raphe pallidus nucleuscontraRPa-0.5
Paramedial raphe nucleuscontraRApam-0.5
A1 noradrenergic cells rostral partcontraA1R0
A2 noradrenergic cellscontraA2-0.5
Epifascicular nucleuscontraEF0
Linear nucleus of the medullacontraLi0
Nucleus of RollercontraRo0
Inferior olivecontraIO0
Juxtaolivary nucleuscontraJxO0
Caudal periolivary nucleuscontraCPO0
Lateral superior olivecontraLSO0
Dorsal paragigantocellular nucleuscontraDPGi-0.5
Lateral paragigantocellular nucleuscontraLPGi-0.5
Lateral paragigantocellular nucleus alpha partcontraLPBGiA0
Lateral paragigantocellular nucleus external partcontraLPBGiE-0.5
Pre Boetzinger complexcontraPrBo-0.5
Retroambiguus nucleuscontraRAmb0
Rostral ventral respiratory groupcontraRVRG-0.5
Inferior salivatory nucleuscontraIS0
Superior salivatory nucleuscontraSuS-0.5
Nucleus X [Special group]contraNcX-0.5
Superior cerebral pedunclecontrasucp-0.5
Medial lemniscuscontraml-0.5
Ventral spinocerebellar tractcontravsc0
Field CA1 of hippocampus caudal partcontraCA1ca0
Central cervical nucleuscontraMESccn-0.5
Pyramidal tractcontrapy-0.5
Rubrospinal tractcontrars0
Facial nerveipsi7fn0
Facial nervecontra7fn0
MyocardiumipsiOrgsCorMyo-0.5
MyocardiumcontraOrgsCorMyo-0.5

Input from

NameSideAbbr.WeightDetails
Periaqueductal gray rostrolateral partipsiPAGRL-0.5
Substantia innominataipsiSI3
Magnocellular preoptic nucleusipsiMCPO3
Median preoptic nucleusipsiMnPO-0.5
Dorsal median preoptic nucleusipsiMnPOD-0.5
Juxtaparaventricular part caudal [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVC1
Juxtaparaventricular part rostral [Lateral hypothalamic area [Preoptic anterior region]]ipsiJPVR0
Lateral hypothalamic area anterior part [Preoptic anterior region]ipsiLHAapar2
Lateral hypothalamic area posterior part [Preoptic anterior region]ipsiLHApPAR2
Lateral hypothalamic area premammillary subfornical region [Preoptic anterior region]ipsiLHAsfp2
Lateral hypothalamic area dorsal partipsiLHd-0.5
Lateral hypothalamic area juxtadorsomedial regionipsiJDM3
Lateral hypothalamic area motor related juxtaventromedial regionipsiLHAjvm0.5
Lateral hypothalamic area motor related juxtaventromedial region dorsal zoneipsiLHAjvd0.5
Lateral hypothalamic area motor related juxtaventromedial region ventral zoneipsiLHAjvv0
Lateral hypothalamic area subfornical region anterior zoneipsiLHAsfa2
Paraventricular nucleus lateral parvocellular partipsiPaLp2
Paraventricular nucleus medial partipsiPame2
Subfornical organipsiSFO-0.5
Anterior basolateral nucleusipsiBLA-1
Posterior basolateral nucleusipsiBLP-1
Anterior basomedial nucleusipsiBMA1
Posterior basomedial nucleusipsiBMP1
Lateral amygdaloid nucleusipsiLA-1
Central amygdaloid nucleusipsiCe2
Capsule like area surrounding central amygdaloid nucleusipsiCec3
Central amygdaloid nucleus lateral central partipsiCeLce3
Central amygdaloid nucleus intermediate divisionipsiCeI-0.5
Central amygdaloid nucleus medial divisionipsiCeM4
Accumbens nucleusipsiAc-0.5
Parasubthalamic nucleusipsiPSTh-0.5
Dorsal anterior cingulate cortexipsiDACC3
Prelimbic cortexipsiPrL3
Infralimbic cortexipsiIL3
Infralimbic cortex caudal partipsiILCa2
Medial prefrontal cortex dorsoventral partipsimPFCdv-0.5
Medial prefrontal cortex rostrocaudal partipsimPFCrc-0.5
Medial prefrontal cortex rostrocaudal part layer 5ipsimPFCrcL53
Medial prefrontal cortex rostrocaudal part layer 6ipsimPFCrcL61
Medial prefrontal cortex rostral partipsimPFCr1
Lateral orbital cortexipsiLO-0.5
Ventral orbital cortexipsiVO-0.5
Ventral orbital cortex layer 6ipsiVOL6-0.5
Ventrolateral orbital areaipsiVLO-0.5

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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