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Rat connectome



Spinal cord layer 3 C7 left


Abbreviation
SCL3C7
Color       
Superior regionsNucleus proprius C7

SynonymsAbbr.Language
Spinal cord layer 3 C7SCL3C7Eng

Output to

NameSideAbbr.WeightDetails
MesencephalonipsiMEC-0.5
Periaqueductal grayipsiPAG0.5
Dorsolateral periaqueductal grayipsiDLPAG1
Lateral periaqueductal grayipsiLPAG1
Periaqueductal gray lateroventral partipsiPAGLV0.5
Cerebellar lobule 4ipsiCERL40
Cerebellar lobule 5ipsiCERL51
Cerebellar lobule 7ipsiCERL71
Cerebellar lobule 7aipsiCERL7a1
Cerebellar lobule 7bipsiCERL7b1
Cerebellar lobule 8ipsiCERL81
Cerebellar lobule 9ipsiCERL91
Cerebellar lobule 6ipsiCERL61
Cerebellar lobule 6aipsiCERL6a1
Cerebellar lobule 6bipsiCERL6b1
Cerebellar lobule 6cipsiCERL6c1
Cerebellar lobule 6dipsiCERL6d1
Pontine medullary junctionipsiPMJ-0.5
Dorsal reticular formationipsiDRF-0.5
Lateral parabrachial nucleusipsiLPB0.5
Lateral parabrachial nucleus internal partipsiLPBI2
Lateral parabrachial nucleus lateral partipsiLPBL1
Parabrachial nucleus central lateral partipsiPBCeL0
Parabrachial nucleus dorsolateral partipsiPBDL0
Parabrachial nucleus superior lateralipsiPBSL0
Gigantocellular reticular nucleusipsiGi2
Lateral reticular nucleusipsiLRt4
Caudal part to the midportion of the lateral reticular nucleusipsiCaLRtMp2
Caudal third of the caudomedial part of the lateral reticular nucleusipsiLRtcmCt2
Lateral reticular nucleus lateral partipsiLRtL3
Subnucleus reticularis dorsalisipsiSRD3
Medullary reticular nucleus dorsal partipsiMdDd3
Nucleus of the solitary tractipsiSol1
Nucleus of the solitary tract commissural partipsiSolC2
Nucleus of the solitary tract dorsomedial partipsiSolDM2
Nucleus of the solitary tract intermediate partipsiSolIM0
Nucleus of the solitary tract lateral partipsiSolL2
Nucleus of the solitary tract medial partipsiSolM2
Caudal ventrolateral medullaipsiCVLM3
Caudal ventrolateral medulla lateral partipsiCVLMl3
Rostral ventrolateral medullaipsiRVLM4
Caudal dorsal reticular medulla oblongataipsiCDRMO-0.5
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA20.5
Dorsal column nucleiipsiDCN2
Cuneate nucleusipsiCu4
Gracile nucleus principal partipsiGr-0.5
Lateral paragigantocellular nucleusipsiLPGi2
Substantia innominata dorsal partipsiSID1
Dorsal regionipsiDHR-0.5
Lateral hypothalamic areaipsiLH1.5
Lateral hypothalamic area anterior partipsiLHAa0.5
Lateral hypothalamic area posterior partipsiLHAp0.5
Medial division of the hypothalamusipsiMdH0.5
Dorsal hypothalamic areaipsiDA1.5
Dorsomedial hypothalamic nucleus [Medial zone]ipsiDM1.5
Posterior hypothalamic areaipsiPHA0.5
Paraventricular hypothalamic nucleusipsiPa1.5
Suprachiasmatic nucleusipsiSCh1.5
Supraoptic nucleus [Supraoptic region]ipsiSO1.5
ThalamusipsiT0.5
Central medial thalamic nucleusipsiCM0.5
Centrolateral thalamic nucleusipsiCL1
Parafascicular thalamic nucleusipsiPF0.5
Lateral group of the dorsal thalamusipsiLAT0
Posterior thalamic nuclear groupipsiPo2
Posterior thalamic nuclear group triangular partipsiPoT3
Mediodorsal thalamic nucleusipsiMD0.5
Submedius thalamic nucleusipsiSub0.5
Paraventricular thalamic nucleus caudal partipsiPVca0.5
Paraventricular thalamic nucleus ventral partipsiPVV0.5
Reuniens thalamic nucleusipsiRe0.5
Ventrolateral thalamic nucleusipsiVL0
Ventral posterior thalamic nucleus parvicellular partipsiVPPC1
Ventrobasal complexipsiVB1
Ventral posterolateral thalamic nucleusipsiVPL2
Ventromedial thalamic nucleusipsiVM0.5
Medial thalamic zoneipsiMTZ0
Posterior groupipsiPTG1
Subparafascicular thalamic nucleusipsiSPF1
Zona incertaipsiZI0.5
TelencephalonipsiTEL-0.5
Amygdaloid complexipsiAC-0.5
Basolateral amygdaloid nucleusipsiBL0.5
Central amygdaloid nucleusipsiCe0.5
Basal gangliaipsiBG-0.5
Globus pallidusipsiGP1
Accumbens nucleusipsiAc1
Infralimbic cortexipsiIL-0.5
Medial orbital cortexipsiMO-0.5
Septal regionipsiSER1
Cervical segment 1ipsiCS13
Lateral cervical nucleus C1ipsiLatCC1-0.5
Cervical segment 2ipsiCS21
Lateral cervical nucleus C2ipsiLatCC2-0.5
Cervical segment 3ipsiCS31
Lateral cervical nucleus C3ipsiLatCC3-0.5
Cervical segment 4ipsiCS41
Lateral cervical nucleus C4ipsiLatCC4-0.5
Cervical segment 5ipsiCS51
Interneuron groups of layer 9 C5ipsiiGL9C5-0.5
Motoneuron groups of layer 9 C5ipsiMGL9C5-0.5
Cervical segment 6ipsiCS61
Interneuron groups of layer 9 C6ipsiiGL9C6-0.5
Motoneuron groups of layer 9 C6ipsiMGL9C6-0.5
Cervical segment 7ipsiCS71
Interneuron groups of layer 9 C7ipsiiGL9C7-0.5
Motoneuron groups of layer 9 C7ipsiMGL9C7-0.5
Cervical segment 8ipsiCS81
Interneuron groups of layer 9 C8ipsiiGL9C8-0.5
Motoneuron groups of layer 9 C8ipsiMGL9C8-0.5
Thoracal segment 1ipsiT11
Interneuron groups of layer 9 T1ipsiiGL9T1-0.5
Motoneuron groups of layer 9 T1ipsiMGL9T1-0.5
Thoracal segment 2ipsiT23
Spinal cord layers T2ipsiSCLT21
Thoracal segment 3ipsiT31
Thoracal segment 4ipsiT41
Thoracal segment 5ipsiT51
Thoracal segment 6ipsiT61
Thoracal segment 7ipsiT71
Thoracal segment 8ipsiT81
Thoracal segment 9ipsiT91
Thoracal segment 10ipsiT101
Thoracal segment 11ipsiT111
Thoracal segment 12ipsiT121
Thoracal segment 13ipsiT131
Lumbar segment 1ipsiL11
Lumbar segment 2ipsiL21
Lumbar segment 3ipsiL31
Lumbar segment 4ipsiL41
Lumbar segment 5ipsiL51
Spinal nucleus of the bulbocavernosus lumbal segment 5ipsiBCL50
Lumbar segment 6ipsiL61
Spinal nucleus of the bulbocavernosus lumbal segment 6ipsiBCL60
Sacral segment 1ipsiSa11
Sacral segment 2ipsiSa21
Sacral segment 3ipsiSa31
Sacral segment 4ipsiSa41
MesencephaloncontraMEC0.5
Nucleus of DarkschewitschcontraDk-0.5
Oculomotor nucleuscontra3-0.5
Periaqueductal graycontraPAG3
Dorsolateral periaqueductal graycontraDLPAG3
Lateral periaqueductal graycontraLPAG3
Periaqueductal gray dorsal partcontraPAGd1
Periaqueductal gray laterodorsal partcontraPAGLD1
Periaqueductal gray lateroventral partcontraPAGLV1
Ventrolateral periaqueductal graycontraVLPAG2
Intercollicular nucleuscontraInCo-0.5
Superior colliculuscontraSC-0.5
Superior colliculus intermediate layerscontraSCi-0.5
Superior colliculus deep layerscontraSCd-0.5
Edinger Westphal nucleuscontraEW-0.5
Interstitial nucleus of CajalcontraInC-0.5
Cerebellar lobule 4contraCERL40
Cerebellar lobule 5contraCERL51.5
Cerebellar lobule 7contraCERL71.5
Cerebellar lobule 7acontraCERL7a1.5
Cerebellar lobule 7bcontraCERL7b1.5
Cerebellar lobule 8contraCERL81.5
Cerebellar lobule 9contraCERL91.5
Cerebellar lobule 6contraCERL61.5
Cerebellar lobule 6acontraCERL6a1.5
Cerebellar lobule 6bcontraCERL6b1.5
Cerebellar lobule 6ccontraCERL6c1.5
Cerebellar lobule 6dcontraCERL6d1.5
Deep mesencephalic nucleuscontraDpMe1
Cuneiforme nucleuscontraCnF3
Koelliker Fuse nucleuscontraKF0.5
Lateral parabrachial nucleuscontraLPB3
Lateral parabrachial nucleus crescent partcontraLPBCr2
Lateral parabrachial nucleus dorsolateral partcontraLPBdL3
Lateral parabrachial nucleus external part inner portioncontraLPBEip1
Lateral parabrachial nucleus external part outer portioncontraLPBEop2
Lateral parabrachial nucleus internal partcontraLPBI0
Lateral parabrachial nucleus lateral partcontraLPBL1
Lateral parabrachial nucleus superior partcontraLPBS2
Parabrachial nucleus central lateral partcontraPBCeL1
Parabrachial nucleus dorsolateral partcontraPBDL1
Parabrachial nucleus medialcontraPBnMe0
Medial parabrachial nucleus external partcontraMPBE1
Parabrachial nucleus superior lateralcontraPBSL1
Lateral reticular nucleuscontraLRt3
Lateral reticular nucleus lateral partcontraLRtL2
Subnucleus reticularis dorsaliscontraSRD0.5
Medullary reticular nucleus dorsal partcontraMdDd2
Nucleus of the solitary tractcontraSol3
Nucleus of the solitary tract commissural partcontraSolC1
Nucleus of the solitary tract dorsomedial partcontraSolDM0.5
Nucleus of the solitary tract intermediate partcontraSolIM0
Nucleus of the solitary tract lateral partcontraSolL0.5
Nucleus of the solitary tract medial partcontraSolM0.5
Caudal ventrolateral medullacontraCVLM3
Caudal ventrolateral medulla lateral partcontraCVLMl2
Rostral ventrolateral medullacontraRVLM2
A1 noradrenergic cellscontraA13
A2 noradrenergic cellscontraA22
Dorsal column nucleicontraDCN0.5
Cuneate nucleuscontraCu1
Substantia innominata dorsal partcontraSID1
Lateral hypothalamic areacontraLH3
Lateral hypothalamic area anterior partcontraLHAa0.5
Lateral hypothalamic area posterior partcontraLHAp0.5
Medial division of the hypothalamuscontraMdH1
Dorsal hypothalamic areacontraDA3
Dorsomedial hypothalamic nucleus [Medial zone]contraDM3
Posterior hypothalamic areacontraPHA0.5
Paraventricular hypothalamic nucleuscontraPa3
Suprachiasmatic nucleuscontraSCh3
Supraoptic nucleus [Supraoptic region]contraSO3
ThalamuscontraT3
Central medial thalamic nucleuscontraCM0.5
Centrolateral thalamic nucleuscontraCL3
Parafascicular thalamic nucleuscontraPF0.5
Lateral group of the dorsal thalamuscontraLAT-0.5
Posterior thalamic nuclear groupcontraPo2
Medial part of posterior thalamic nuclear groupcontraPoM-0.5
Posterior thalamic nuclear group triangular partcontraPoT3
Mediodorsal thalamic nucleuscontraMD2
Submedius thalamic nucleuscontraSub0.5
Paraventricular thalamic nucleus caudal partcontraPVca0.5
Paraventricular thalamic nucleus ventral partcontraPVV0.5
Reuniens thalamic nucleuscontraRe0.5
Ventral posterior thalamic nucleus parvicellular partcontraVPPC1
Ventrobasal complexcontraVB3
Ventral posterolateral thalamic nucleuscontraVPL2
Ventral posteromedial thalamic nucleuscontraVPM-0.5
Ventromedial thalamic nucleuscontraVM0.5
Ventral posterolateral thalamic nucleus parvicellular partcontraVPLpc-0.5
Lateral posterior thalamic nucleuscontraLP-0.5
Medial thalamic zonecontraMTZ-0.5
Posterior groupcontraPTG3
Subparafascicular thalamic nucleuscontraSPF1
Zona incertacontraZI0.5
Pretectal regioncontraPRT-0.5
Anterior pretectal nucleuscontraAPT-0.5
Dorsolateral funiculuscontradlft-2
Lateral funiculuscontralf-2
Basolateral amygdaloid nucleuscontraBL0.5
Central amygdaloid nucleuscontraCe0.5
Globus palliduscontraGP1
Accumbens nucleuscontraAc2
Septal regioncontraSER2
Cervical segment 1contraCS11
Cervical segment 2contraCS21
Cervical segment 3contraCS31
Cervical segment 4contraCS41
Cervical segment 5contraCS51
Cervical segment 6contraCS61
Cervical segment 7contraCS71
Cervical segment 8contraCS81
Thoracal segment 1contraT11
Thoracal segment 2contraT21
Spinal cord layers T2contraSCLT22
Thoracal segment 3contraT31
Thoracal segment 4contraT41
Thoracal segment 5contraT51
Thoracal segment 6contraT61
Thoracal segment 7contraT71
Thoracal segment 8contraT81
Thoracal segment 9contraT91
Thoracal segment 10contraT101
Thoracal segment 11contraT111
Thoracal segment 12contraT121
Thoracal segment 13contraT131
Lumbar segment 1contraL11
Lumbar segment 2contraL21
Lumbar segment 3contraL31
Lumbar segment 4contraL41
Lumbar segment 5contraL51
Lumbar segment 6contraL61
Sacral segment 1contraSa11
Sacral segment 2contraSa21
Sacral segment 3contraSa31
Sacral segment 4contraSa41
Median nerveipsimen-0.5
Tibial nerveipsitibial-0.5
Ulnar nerveipsiuln-0.5

Input from

NameSideAbbr.WeightDetails
Central grayipsiCG1
Red nucleusipsiR2.5
Red nucleus caudal partipsiRnCa3
Red nucleus magnocellular partipsiRMC3
Red nucleus rostral partipsiRnRo3
Ventrolateral tegmental areaipsiVLTg2
Pedunculopontine tegmental nucleusipsiPPTg3
Interstitial nucleus of CajalipsiInC1.5
A4 noradrenaline cellsipsiA40
A5 noradrenaline cellsipsiA53
A7 noradrenaline cellsipsiA73
Locus coeruleusipsiLC3
Locus coeruleus ventral partipsiLCv1
Caudal part of ventral locus coeruleusipsiLCveca0.5
Parapyramidal nucleusipsiPPy3
Magnocellular reticular nucleusipsiNRMC-0.5
Rostroventrolateral reticular nucleusipsiRVL1
Ventral reticular formationipsiVRF2
Ventrolateral reticular formationipsiVLRF-0.5
Deep mesencephalic nucleusipsiDpMe-0.5
Dorsolateral pontine reticular formationipsiPRNDL1
Koelliker Fuse nucleusipsiKF2
Lateral parabrachial nucleusipsiLPB1
Parabrachial nucleus medialipsiPBnMe1
Gigantocellular reticular nucleusipsiGi1
Medullary reticular nucleus dorsal partipsiMdDd4
Dorsal part of the medullary reticular nucleus dorsal partipsidMdDd4
Ventral part of the medullary reticular nucleus dorsal partipsivMdDd4
Medullary reticular nucleus ventral partipsiMdV4
Subcoeruleus nucleusipsiSubC3
C2 adrenaline cellsipsiC20
Boetzinger complexipsiBo0
Spinal trigeminal nucleus caudal partipsiSp5C2
Medial vestibular nucleus caudal partipsiMVeP3
Nucleus of the solitary tractipsiSol2
Nucleus of the solitary tract commissural partipsiSolC1
Raphe magnus nucleusipsiRMg3
Raphe pallidus nucleusipsiRPa3
Caudal ventrolateral medulla lateral partipsiCVLMl3
Lateral part of the caudal ventrolateral medullaipsiLCVLM1
Lateral most portion of the ventrolateral medullaipsiLMVL-0.5
A1 noradrenergic cellsipsiA11
A2 noradrenergic cellsipsiA21
Cuneate nucleusipsiCu1
Cuneate nucleus dorsal partipsiCuD-0.5
Rostral part of the ventromedial medulla oblongataipsiRMeObvm4
Lateral hypothalamic areaipsiLH2
Lateral hypothalamic area posterior partipsiLHAp3
Tuberal division of the lateral hypothalamic areaipsiLHTC3
Paraventricular hypothalamic nucleus dorsal partipsiPaD-0.5
Zona incerta rostromedial partipsiZIrm0
Somatomotoric regionsipsiSMR-0.5
Lateral agranular prefrontal cortexipsiAGl3
Medial agranular prefrontal cortexipsiAGm3
Primary somatosensory cortexipsiS13
Secondary somatosensory cortexipsiS23
Dorsal root ganglion C2ipsiDRGC2-0.5
Dorsal root ganglion C4ipsiDRGC4-0.5
Dorsal root ganglion C5ipsiDRGC5-0.5
Dorsal root ganglion C6ipsiDRGC6-0.5
Dorsal root ganglion C7ipsiDRGC7-0.5
Dorsal root ganglion C8ipsiDRGC8-0.5
Area X T1ipsiSCL10T1-0.5
Spinal cord layer 5 T1ipsiSCL5T1-0.5
Spinal cord layer 6 T1ipsiSCL6T1-0.5
Spinal cord layer 3 T1ipsiSCL3T1-0.5
Spinal cord layer 4 T1ipsiSCL4T1-0.5
Spinal cord layer 1 T1ipsiSCL1T1-0.5
Spinal cord layer 2 T1ipsiSCL2T1-0.5
Spinal cord layer 7 T1ipsiSCL7T1-0.5
Spinal cord layer 8 T1ipsiSCL8T1-0.5
Area X T2ipsiSCL10T2-0.5
Spinal cord layer 5 T2ipsiSCL5T2-0.5
Spinal cord layer 6 T2ipsiSCL6T2-0.5
Spinal cord layer 3 T2ipsiSCL3T2-0.5
Spinal cord layer 4 T2ipsiSCL4T2-0.5
Spinal cord layer 1 T2ipsiSCL1T2-0.5
Spinal cord layer 2 T2ipsiSCL2T2-0.5
Spinal cord layer 7 T2ipsiSCL7T2-0.5
Spinal cord layer 8 T2ipsiSCL8T2-0.5
Area X T3ipsiSCL10T3-0.5
Spinal cord layer 5 T3ipsiSCL5T3-0.5
Spinal cord layer 6 T3ipsiSCL6T3-0.5
Spinal cord layer 3 T3ipsiSCL3T3-0.5
Spinal cord layer 4 T3ipsiSCL4T3-0.5
Spinal cord layer 1 T3ipsiSCL1T3-0.5
Spinal cord layer 2 T3ipsiSCL2T3-0.5
Spinal cord layer 7 T3ipsiSCL7T3-0.5
Spinal cord layer 8 T3ipsiSCL8T3-0.5
Area X T4ipsiSCL10T4-0.5
Spinal cord layer 5 T4ipsiSCL5T4-0.5
Spinal cord layer 6 T4ipsiSCL6T4-0.5
Spinal cord layer 3 T4ipsiSCL3T4-0.5
Spinal cord layer 4 T4ipsiSCL4T4-0.5
Spinal cord layer 1 T4ipsiSCL1T4-0.5
Spinal cord layer 2 T4ipsiSCL2T4-0.5
Spinal cord layer 7 T4ipsiSCL7T4-0.5
Spinal cord layer 8 T4ipsiSCL8T4-0.5
Pedunculopontine tegmental nucleuscontraPPTg3
A4 noradrenaline cellscontraA40
A5 noradrenaline cellscontraA51
A7 noradrenaline cellscontraA71
Locus coeruleuscontraLC3
Locus coeruleus ventral partcontraLCv0.5
Caudal part of ventral locus coeruleuscontraLCveca0.5
Magnocellular reticular nucleuscontraNRMC-0.5
Rostroventrolateral reticular nucleuscontraRVL-0.5
Cuneiforme nucleuscontraCnF-2
Medullary reticular nucleus dorsal partcontraMdDd3
Dorsal part of the medullary reticular nucleus dorsal partcontradMdDd1
Ventral part of the medullary reticular nucleus dorsal partcontravMdDd3
Medullary reticular nucleus ventral partcontraMdV3
Subcoeruleus nucleuscontraSubC1
C2 adrenaline cellscontraC20
Spinal trigeminal nucleus caudal partcontraSp5C0
Medial vestibular nucleus caudal partcontraMVeP3
Nucleus of the solitary tractcontraSol2
Nucleus of the solitary tract commissural partcontraSolC-0.5
Caudal ventrolateral medulla lateral partcontraCVLMl2
Lateral most portion of the ventrolateral medullacontraLMVL-0.5
A1 noradrenergic cellscontraA11
A2 noradrenergic cellscontraA21
Cuneate nucleuscontraCu0.5
Nucleus interfascicularis hypoglossicontraNIFH1
Rostral part of the ventromedial medulla oblongatacontraRMeObvm4
Dorsolateral funiculuscontradlft-2
Cerebral cortexcontraCEC3
Frontal cortex area 2contraFr23
Parietal association cortexcontraPtA0.5
Insular cortexcontraICX0.5
Prefrontal cortexcontraPFC0.5
Lateral agranular prefrontal cortexcontraAGl3
Forelimb motor cortexcontraFMCx3
Medial agranular prefrontal cortexcontraAGm-0.5
Primary somatosensory cortexcontraS13
Secondary somatosensory cortexcontraS23
Secondary visual cortexcontraV20.5
Greater occipital nerveipsiPNSgo-0.5
Median nerveipsimen-0.5
Superficial cutaneous part of the radial nerveipsiradsc2
Ulnar nerveipsiuln-0.5
Forepaw digit 4ipsiOrgFLD43
Forepaw digit 5ipsiOrgFLD53
Forelimb extensor digitorum communisipsiMuscFoEDC2

Key for weights

ValueWeight
-3 unknown
-2 fibers of passage
-1 not clear
-0.5 exists
0 not present
0.5 very light
1 light / sparse
1.5 light / moderate
2 moderate / dense
2.5 moderate / strong
3 strong
4 very strong





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